Clone Sequence Records
BS08423.3prime Sequence
937 bp (881 high quality bases) assembled on 2006-01-10
> BS08423.3prime
ATGGTCTAGAAAGCTTTCACAGATCCCATGAGAAGAGATGGTGCTTCACC
AGCATGTCCCTTACTCCGTCCTTGAGCGGTTGCGACTCCTTGCCGCGCTT
CGGCGGCAGTTCCCAGTCGGGGTTCAGATTGAAGGCGAACTGCGAGAGAA
TGCGCAGCTCGCACTTGATCTGCACCCAACCGGGTGAGTCAATAAAGCTC
CAGGAATGATACCACTTCTGTACGACCTCCTGGCAGGCGCACAGCACCTC
CAACCAGAGGTGAAGAACCTGTTCGTTGAGGCCCAAACAGATCAGCGAGC
GTAACTTAACATCCATTTGTGCGTGCGCATCATCGTGCGTCTGATTGATG
GCCTGAACGCAGCGATAGAGTAGCTCCTCGGGCGTTAGTACCTTGCCATC
CTCATCCAGTCGATACGTTTTGCAGAGCACAAGACGGCTGTACACCGACT
CAAAATCCTTCTCCACCTCCCGGGTGGCAGCCTCCTCAATATACAGCCAG
GGGTGTATTGGTCCACCCAGAAACGTGGGCCGTTTCATGCCGTGCTCCAG
AAAGGCCTTGATGGCCGGCGCCAAGGTGCCACGCACCAGGTCCGTTACAG
TTTCCGAAATGGCATCATCTCCGGCTGATGTGTACAACTTGCTCCGCTCG
TCGAGCAGCTCCACGAACTTGGCTGGAAACCAGCCGCGCAGGCCGTTCAG
TTCTCCCACCCAGCAGTGTTCGTCTTTTTGACTGATGATTGTTATGATGT
CGTTCCGCCGAAATCCCAACTCATCGTCGTCGTGCCGCTCAAAGTCGTGC
AGGGCTTTAGCCCTTCGCTTTCGCGTCCTTGCCACATTGATAAAGTTTTC
GTGGTCCTTGGCATGCGACTCGGTGCTGTAGTTGGCCGTCAGCTGGATGT
GACCGGCAAGCTTGGGGTCAATGGTGATGAAATGACG
BS08423.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:06:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12241-PA | 2415 | CG12241-RA | 1495..2415 | 937..17 | 4580 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 07:16:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12241-RA | 2986 | CG12241-RA | 1650..2570 | 937..17 | 4590 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 07:16:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15221035..15221955 | 937..17 | 4590 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-01 07:16:18 has no hits.
BS08423.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:40:13 Download gff for
BS08423.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12241-PA | 1495..2415 | 17..937 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:39:13 Download gff for
BS08423.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12241-PA | 1495..2415 | 17..937 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:12:42 Download gff for
BS08423.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12241-RA | 1650..2581 | 3..937 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:42:27 Download gff for
BS08423.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12241-RA | 1650..2581 | 3..937 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:42:27 Download gff for
BS08423.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15221035..15221966 | 3..937 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:12:42 Download gff for
BS08423.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11046757..11047688 | 3..937 | 99 | | Minus |
BS08423.5prime Sequence
962 bp (812 high quality bases) assembled on 2006-01-10
> BS08423.5prime
GAAGTTATCAGTCGACATGGACATGGCCAGGAGCATTTTTGGCCGCGACC
ATGAGGGTTACGTGGGCCGTGAAGAGCATACGCGCAAACTGCAGAACCTG
GGCTCGGAAGACGATCTGGGAGAGCTGCCGCCTATGATGGAGGAACTAAG
TGTGGCCGATGGCCTGCGACCAAATCCCGGTGGGCCATTCTCCGCTCTTA
CCGCCTCCATGTGGCCACAGGAAATCCTAGCCAAGCTGGGCGGTGGCGCG
GAATTGGCTTCCGGCCCAAACGACCAGCCGGAGTACCGTTTTGACGAATT
TGGCTTCCGGGTGGAGGAGGAGGACGGTCCGGAGCAGAGCTCCAACAAAT
TGCTGAGCATACCCTTTGTAGAGGACGCGCAGCAGCGATTGCAGTGGATC
GCCCACCTGGAGTTCTCACACAACAAGGAGGCTGCCGAGCTGAGCTGGGA
GCATGTGGATGTAATGCTCCCACGCACAGAAAAGCTGCGCAATATGGTCC
GTCAGGGTATCCCGCACACGTTGCGTGCCCAGATGTGGATGCGTCTATCA
GGAGCGTTGGCCAAGAAGCAAAAGAGCGAGACCAGCTACCACGATATAGT
TAAAGCTTCTAGCAATGACCAGCTGATGACTTCGAAGCAGATCGAGAAGG
ACCTTTTGCGCATCCTGCCAACAAATGCCTGCTTTAGCAATCCGAATGGG
ACAGGCATTCCCCGATTGCGCCGCATTCTGAGGGGCATCGCGTGGCTTTT
TCCTGACATTGGCTACTGTCAGGGCACCGGAGTGATCGTTGCCTGTCTGC
TTCTCTTCATGGAGGAGGAGAACGCCTTTTGGATGATGGCCACCATTGTA
GAGGATCTGCTGCCAGCTTCCTACTACAGCTCAACTCTTCTGGGAATTCA
AGCCGAACAACGCGTGATGCACACGCTTATTGCAACTACCTGAGCAGCGT
GGACGAGTCCTT
BS08423.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:06:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12241-PA | 2415 | CG12241-RA | 1..917 | 17..933 | 4560 | 99.8 | Plus |
| CG12241-PA | 2415 | CG12241-RA | 918..947 | 933..962 | 150 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 01:19:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12241-RA | 2986 | CG12241-RA | 155..1102 | 16..962 | 4700 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 01:19:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15219545..15220068 | 82..605 | 2620 | 100 | Plus |
| 3R | 32079331 | 3R | 15220128..15220487 | 604..962 | 1735 | 99.4 | Plus |
| 3R | 32079331 | 3R | 15219410..15219476 | 16..82 | 335 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 01:19:48 has no hits.
BS08423.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:40:14 Download gff for
BS08423.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12241-PA | 1..947 | 17..962 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:39:14 Download gff for
BS08423.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12241-PA | 1..947 | 17..962 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:39:52 Download gff for
BS08423.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12241-RA | 146..1102 | 9..962 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:28:40 Download gff for
BS08423.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12241-RA | 146..1102 | 9..962 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:28:40 Download gff for
BS08423.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15219401..15219476 | 9..82 | 94 | -> | Plus |
| 3R | 15219546..15220068 | 83..605 | 100 | -> | Plus |
| 3R | 15220130..15220487 | 606..962 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:39:52 Download gff for
BS08423.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11045123..11045198 | 9..82 | 94 | -> | Plus |
| arm_3R | 11045268..11045790 | 83..605 | 100 | -> | Plus |
| arm_3R | 11045852..11046209 | 606..962 | 99 | | Plus |
BS08423.complete Sequence
2447 bp assembled on 2009-08-24
GenBank Submission: KX803274
> BS08423.complete
GAAGTTATCAGTCGACATGGACATGGCCAGGAGCATTTTTGGCCGCGACC
ATGAGGGTTACGTGGGCCGTGAAGAGCATACGCGCAAACTGCAGAACCTG
GGCTCGGAAGACGATCTGGGAGAGCTGCCGCCTATGATGGAGGAACTAAG
TGTGGCCGATGGCCTGCGACCAAATCCCGGTGGGCCATTCTCCGCTCTTA
CCGCCTCCATGTGGCCACAGGAAATCCTAGCCAAGCTGGGCGGTGGCGCG
GAATTGGCTTCCGGCCCAAACGACCAGCCGGAGTACCGTTTTGACGAATT
TGGCTTCCGGGTGGAGGAGGAGGACGGTCCGGAGCAGAGCTCCAACAAAT
TGCTGAGCATACCCTTTGTAGAGGACGCGCAGCAGCGATTGCAGTGGATC
GCCCACCTGGAGTTCTCACACAACAAGGAGGCTGCCGAGCTGAGCTGGGA
GCATGTGGATGTAATGCTCCCACGCACAGAAAAGCTGCGCAATATGGTCC
GTCAGGGTATCCCGCACACGTTGCGTGCCCAGATGTGGATGCGTCTATCA
GGAGCGTTGGCCAAGAAGCAAAAGAGCGAGACCAGCTACCACGATATAGT
TAAAGCTTCTAGCAATGACCAGCTGATGACTTCGAAGCAGATCGAGAAGG
ACCTTTTGCGCATCCTGCCAACAAATGCCTGCTTTAGCAATCCGAATGGG
ACAGGCATTCCCCGATTGCGCCGCATTCTGAGGGGCATCGCGTGGCTTTT
TCCTGACATTGGCTACTGTCAGGGCACCGGAGTGATCGTTGCCTGTCTGC
TTCTCTTCATGGAGGAGGAGAACGCCTTTTGGATGATGGCCACCATTGTA
GAGGATCTGCTGCCAGCTTCCTACTACAGCTCAACTCTTCTGGGAATTCA
AGCCGACCAACGCGTGATGCACACGCTTATTGCCAACTACCTGAGCAGCG
TGGACGAGTCCTTGCGTAAGCACGACATCGAGCTGTCTTTAATCACGCTG
CATTGGTTCCTCACGCTTTTTGCCAACGTGGTGCATATGAAGATTCTTGT
GCGTATCTGGGACTGGTTCTTTTACGAGGGCTCCATCGTGCTGTTCCAGT
TGACTCTGGGCATGCTCAAGGTGAAGGAGCAAGATCTAAAGCATCTCGAG
AACTCAGCACAGATTTTCAATTCACTGTCCGACATTCCCGGCGAGGTCAC
TGATGTCGAAGTGCTCTTTCGCCAAGCCCTGGAGGTGGGCGGATCACTTA
GCCAGACGGTAATCGATACCCATCGTCGTCGTCACCTGGCCTATCTCATG
GCGGATCAAGGACATCAGATAGGAAATCCCGAGGCTGCGCCTAATCTTCC
CAAACAACAGCTAGCCCGACGGCAGGTGCGCAAAAGCAAATCCATCCTGG
AAGCCTTTCTCTTCCGCGGCGACGGCAACGAAGGGGATCAGCTGAAGAAC
AAGAATATACGCCAGACGGAGATCCTGGTAGACTTAAGAGAGGCTATCCT
TAAAGTGGGTCGTCATTTCATCACCATTGAACCCAAGCTTGCCGGTCACA
TCCAGCTGACGGCCAACTACAGCACCGAGTCGCATGCCAAGGACCACGAA
AACTTTATCAATGTGGCAAGGACGCGAAAGCGAAGGGCTAAAGCCCTGCA
CGACTTTGAGCGGCACGACGACGATGAGTTGGGATTTCGGCGGAACGACA
TCATAACAATCATCAGTCAAAAAGACGAACACTGCTGGGTGGGAGAACTG
AACGGCCTGCGCGGCTGGTTTCCAGCCAAGTTCGTGGAGCTGCTCGACGA
GCGGAGCAAGTTGTACACATCAGCCGGAGATGATGCCATTTCGGAAACTG
TAACGGACCTGGTGCGTGGCACCTTGGCGCCGGCCATCAAGGCCTTTCTG
GAGCACGGCATGAAACGGCCCACGTTTCTGGGTGGACCAATACACCCCTG
GCTGTATATTGAGGAGGCTGCCACCCGGGAGGTGGAGAAGGATTTTGAGT
CGGTGTACAGCCGTCTTGTGCTCTGCAAAACGTATCGACTGGATGAGGAT
GGCAAGGTACTAACGCCCGAGGAGCTACTCTATCGCTGCGTTCAGGCCAT
CAATCAGACGCACGATGATGCGCACGCACAAATGGATGTTAAGTTACGCT
CGCTGATCTGTTTGGGCCTCAACGAACAGGTTCTTCACCTCTGGTTGGAG
GTGCTGTGCGCCTGCCAGGAGGTCGTACAGAAGTGGTATCATTCCTGGAG
CTTTATTGACTCACCCGGTTGGGTGCAGATCAAGTGCGAGCTGCGCATTC
TCTCGCAGTTCGCCTTCAATCTGAACCCCGACTGGGAACTGCCGCCGAAG
CGCGGCAAGGAGTCGCAACCGCTCAAGGACGGAGTAAGGGACATGCTGGT
GAAGCACCATCTCTTCTCATGGGATCTGTGAAAGCTTTCTAGACCAT
BS08423.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:27:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12241-RA | 2415 | CG12241-PA | 1..2415 | 17..2431 | 12075 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:27:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12241-RA | 2986 | CG12241-RA | 155..2570 | 16..2431 | 12080 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:27:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15220128..15221955 | 604..2431 | 9140 | 100 | Plus |
| 3R | 32079331 | 3R | 15219545..15220068 | 82..605 | 2620 | 100 | Plus |
| 3R | 32079331 | 3R | 15219410..15219476 | 16..82 | 335 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:27:33 has no hits.
BS08423.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:01:33 Download gff for
BS08423.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12241-RA | 150..2563 | 17..2430 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:48:13 Download gff for
BS08423.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12241-RA | 156..2569 | 17..2430 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:49:01 Download gff for
BS08423.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12241-RA | 156..2569 | 17..2430 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:49:01 Download gff for
BS08423.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15219411..15219476 | 17..82 | 100 | -> | Plus |
| 3R | 15219546..15220068 | 83..605 | 100 | -> | Plus |
| 3R | 15220130..15221954 | 606..2430 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:48:13 Download gff for
BS08423.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11045133..11045198 | 17..82 | 100 | -> | Plus |
| arm_3R | 11045268..11045790 | 83..605 | 100 | -> | Plus |
| arm_3R | 11045852..11047676 | 606..2430 | 100 | | Plus |
BS08423.pep Sequence
Translation from 16 to 2430
> BS08423.pep
MDMARSIFGRDHEGYVGREEHTRKLQNLGSEDDLGELPPMMEELSVADGL
RPNPGGPFSALTASMWPQEILAKLGGGAELASGPNDQPEYRFDEFGFRVE
EEDGPEQSSNKLLSIPFVEDAQQRLQWIAHLEFSHNKEAAELSWEHVDVM
LPRTEKLRNMVRQGIPHTLRAQMWMRLSGALAKKQKSETSYHDIVKASSN
DQLMTSKQIEKDLLRILPTNACFSNPNGTGIPRLRRILRGIAWLFPDIGY
CQGTGVIVACLLLFMEEENAFWMMATIVEDLLPASYYSSTLLGIQADQRV
MHTLIANYLSSVDESLRKHDIELSLITLHWFLTLFANVVHMKILVRIWDW
FFYEGSIVLFQLTLGMLKVKEQDLKHLENSAQIFNSLSDIPGEVTDVEVL
FRQALEVGGSLSQTVIDTHRRRHLAYLMADQGHQIGNPEAAPNLPKQQLA
RRQVRKSKSILEAFLFRGDGNEGDQLKNKNIRQTEILVDLREAILKVGRH
FITIEPKLAGHIQLTANYSTESHAKDHENFINVARTRKRRAKALHDFERH
DDDELGFRRNDIITIISQKDEHCWVGELNGLRGWFPAKFVELLDERSKLY
TSAGDDAISETVTDLVRGTLAPAIKAFLEHGMKRPTFLGGPIHPWLYIEE
AATREVEKDFESVYSRLVLCKTYRLDEDGKVLTPEELLYRCVQAINQTHD
DAHAQMDVKLRSLICLGLNEQVLHLWLEVLCACQEVVQKWYHSWSFIDSP
GWVQIKCELRILSQFAFNLNPDWELPPKRGKESQPLKDGVRDMLVKHHLF
SWDL*
BS08423.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:55:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12241-PA | 804 | CG12241-PA | 1..804 | 1..804 | 4227 | 100 | Plus |
| CG7324-PB | 1256 | CG7324-PB | 451..663 | 153..368 | 382 | 35.9 | Plus |
| CG7324-PA | 1291 | CG7324-PA | 451..663 | 153..368 | 382 | 35.9 | Plus |
| CG5916-PB | 330 | CG5916-PB | 62..290 | 156..389 | 288 | 29.8 | Plus |
| CG5916-PA | 330 | CG5916-PA | 62..290 | 156..389 | 288 | 29.8 | Plus |
