Clone BS08426 Report

Search the DGRC for BS08426

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:84
Well:26
Vector:pDNR-Dual
Associated Gene/TranscriptCG5850-RA
Protein status:BS08426.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08426.3prime Sequence

923 bp (803 high quality bases) assembled on 2006-01-10

> BS08426.3prime
ATGGTCTAGAAAGCTTTCACCTGCCTGCGCCCGCACCCAACAGCAGGGCA
TAATCATCGTTGGACTCGGGAATTGGCGCCGCTGCCGACGCGGCACCAGG
GGGCAGGCGCAGGAAACTGCCACCGCCGCCAGCACCCGCACCCGGATCCC
TTTCGCGCTCGCGAAGATGCAGTGTGTCGCGTTGACGGGTCGACGGCTGA
GAGCCTGCCGCTCCCGGCAAGTGTAGTTGTTGTTGTTGGTAGTTGCTATT
GCTACTGTTCCCATCGTCGGCCACGCCTGCTGATTGTGACGAGTTGCCCG
GCAGCTGCTGATCTTGCCGCTTGCTGATCAGATACTCGGACTCACTGCTG
GAGCGGCGAGGACTGCGCGCCAGCGGCTGGTATGTGCTGCGTCCCTGGAA
GCGACGACTCAGTGAACTGCCCACGACGCCCAGATGCTCGGTGACATCCT
CCTGCATGTCGGATATGTCCATCATGGAGAGGAAGGCGCGACACCAGCTA
TGGTTCGGGTTGTTCCAGTACTGCGGCGAGTTGATGTGAAACGGATGGTG
CGGGAAGCTGTAGATGTGAGCCACGGCCGCGATAAACATTTCGATGCAGA
TGAGGAAATTCTGAAGCAGGGAAGCCAGATTGGTGTCTCCCACATCCGAC
CCAAAGATGTCCTTAATAATATTATAGTATACCAGTACGTTGAGTAGCAC
TCCTTGGAAAAACGAGAAAAACACCACAGCCTTGATGCACAGGAATTTGG
GAATAGGCTTCATTGGTTTGAGATCCTCCTTGTTTGCACGGTAAAATAGC
ACCAGGCAATACATGGCCACGAACTGGGATATATTGTTGAACACCCACAT
ATAGGGGAAGGCCACGTTGCCCCGCAACTCGCCCTCGCCGTAAACGCCGC
ATAGCTCGCAGATGACAGAGATA

BS08426.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:06:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG5850-PA 1476 CG5850-RA 653..1476 840..17 4120 100 Minus
CG5850-PB 1710 CG5850-RB 653..1472 840..21 4100 100 Minus
CG5850-PA 1476 CG5850-RA 570..617 923..876 240 100 Minus
CG5850-PB 1710 CG5850-RB 570..617 923..876 240 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:05:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG5850-RG 2744 CG5850-RG 933..1839 923..17 4430 99.4 Minus
CG5850-RD 3946 CG5850-RD 933..1839 923..17 4430 99.4 Minus
CG5850-RA 2744 CG5850-RA 933..1839 923..17 4430 99.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:05:31
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9961729..9962062 280..613 1670 100 Plus
2L 23513712 2L 9961355..9961619 17..281 1325 100 Plus
2L 23513712 2L 9962471..9962677 708..914 930 96.6 Plus
2L 23513712 2L 9962318..9962414 611..707 485 100 Plus
Blast to na_te.dros performed on 2015-02-12 18:05:33 has no hits.

BS08426.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:40:20 Download gff for BS08426.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5850-PA 571..1476 17..922 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:39:22 Download gff for BS08426.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5850-PA 571..1476 17..922 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:11:06 Download gff for BS08426.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5850-RA 934..1839 17..922 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:58:28 Download gff for BS08426.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5850-RA 934..1839 17..922 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:58:28 Download gff for BS08426.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 9961355..9961617 17..279 100 <- Plus
2L 9961729..9962059 280..610 100 <- Plus
2L 9962318..9962414 611..707 100 <- Plus
2L 9962471..9962686 708..922 95   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:11:06 Download gff for BS08426.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9961355..9961617 17..279 100 <- Plus
arm_2L 9961729..9962059 280..610 100 <- Plus
arm_2L 9962318..9962414 611..707 100 <- Plus
arm_2L 9962471..9962686 708..922 95   Plus

BS08426.5prime Sequence

842 bp (841 high quality bases) assembled on 2006-01-10

> BS08426.5prime
GAAGTTATCAGTCGACATGTGCAGCTTGGACGTAAGACGCTTCTTCGAGG
AGTGGCGCATCTGGATACGCCCGCTGCTCATTATCACCTATGTCATCTTC
GCCATCATCGTGGTCCCGCTGCTCATTGTGAACTCCGTGAAGGATGGCTT
CCAGCGCAATGACCAGCTCATTCTCATCGGCGGTCTGTTTGTGTTGTCCG
CAGTGCCCGTGTCCATTTGGCATATCATCCAACACGTCATTCATTTTACC
AAGCCCATACTGCAGAAGCACATAATCCGCATATTGTGGATGGTGCCTAT
CTACGCCTTGAACGCGTGGATCGGCCTTTTCTTTCCGAAGCACTCCATCT
ACGTGGACTCACTGCGCGAGTGCTACGAGGCGTACGTTATCTACAACTTC
ATGGTGTACCTGCTCAACTACTTGAATCTCGGTATGGACCTAGAGGCCAC
AATGGAGTACAAGCCGCAGGTGCCTCACTTCTTTCCGCTCTGCTGCATGC
GGCCGTGGGTGATGGGTCGTGAATTCATCCACAACTGCAAGCACGGCATC
CTCCAGTACACGGTCGTGCGCCCCATTACCACCTTTATCTCTGTCATCTG
CGAGCTATGCGGCGTTTACGGCGAGGGCGAGTTTGCGGGCAACGTGGCCT
TCCCCTATATTGTGGTGGTCAACAATATATCCCAGTTCGTGGCCATGTAT
TGCCTGGTGCTATTTTACCGTGCAAACAAGGAGGATCTCAAACCAATGAA
GCCTATTCCCAAATTCCTGTGCATCAAGGCTGTGGTGTTTTTCTCGTTTT
TCCAAGGAGTGCTACTCAACGTACTGGTATACTATAATATTA

BS08426.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:06:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG5850-PB 1710 CG5850-RB 1..826 17..842 4130 100 Plus
CG5850-PA 1476 CG5850-RA 1..826 17..842 4130 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:46:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG5850-RC 2935 CG5850-RC 558..1383 17..842 4130 100 Plus
CG5850-RG 2744 CG5850-RG 364..1189 17..842 4130 100 Plus
CG5850-RF 2678 CG5850-RF 364..1189 17..842 4130 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:46:07
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9963093..9963392 316..17 1500 100 Minus
2L 23513712 2L 9962735..9963013 594..316 1395 100 Minus
2L 23513712 2L 9962471..9962677 801..595 1035 100 Minus
2L 23513712 2L 9962374..9962414 842..802 205 100 Minus
Blast to na_te.dros performed on 2015-02-13 07:46:09 has no hits.

BS08426.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:40:21 Download gff for BS08426.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5850-PA 1..825 17..841 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:39:23 Download gff for BS08426.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5850-PA 1..825 17..841 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:49:57 Download gff for BS08426.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5850-RF 356..1188 10..841 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:04:19 Download gff for BS08426.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5850-RF 356..1188 10..841 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:04:19 Download gff for BS08426.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 9963093..9963398 11..316 98 <- Minus
2L 9962375..9962414 802..841 100 <- Minus
2L 9962471..9962677 595..801 100 <- Minus
2L 9962735..9963012 317..594 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:49:57 Download gff for BS08426.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9962375..9962414 802..841 100 <- Minus
arm_2L 9962471..9962677 595..801 100 <- Minus
arm_2L 9962735..9963012 317..594 100 <- Minus
arm_2L 9963093..9963398 11..316 98 <- Minus

BS08426.complete Sequence

1508 bp (1508 high quality bases) assembled on 2006-01-18

GenBank Submission: FJ636150

> BS08426.complete
GAAGTTATCAGTCGACATGTGCAGCTTGGACGTAAGACGCTTCTTCGAGG
AGTGGCGCATCTGGATACGCCCGCTGCTCATTATCACCTATGTCATCTTC
GCCATCATCGTGGTCCCGCTGCTCATTGTGAACTCCGTGAAGGATGGCTT
CCAGCGCAATGACCAGCTCATTCTCATCGGCGGTCTGTTTGTGTTGTCCG
CAGTGCCCGTGTCCATTTGGCATATCATCCAACACGTCATTCATTTTACC
AAGCCCATACTGCAGAAGCACATAATCCGCATATTGTGGATGGTGCCTAT
CTACGCCTTGAACGCGTGGATCGGCCTTTTCTTTCCGAAGCACTCCATCT
ACGTGGACTCACTGCGCGAGTGCTACGAGGCGTACGTTATCTACAACTTC
ATGGTGTACCTGCTCAACTACTTGAATCTCGGTATGGACCTAGAGGCCAC
AATGGAGTACAAGCCGCAGGTGCCTCACTTCTTTCCGCTCTGCTGCATGC
GGCCGTGGGTGATGGGTCGTGAATTCATCCACAACTGCAAGCACGGCATC
CTCCAGTACACGGTCGTGCGCCCCATTACCACCTTTATCTCTGTCATCTG
CGAGCTATGCGGCGTTTACGGCGAGGGCGAGTTTGCGGGCAACGTGGCCT
TCCCCTATATTGTGGTGGTCAACAATATATCCCAGTTCGTGGCCATGTAT
TGCCTGGTGCTATTTTACCGTGCAAACAAGGAGGATCTCAAACCAATGAA
GCCTATTCCCAAATTCCTGTGCATCAAGGCTGTGGTGTTTTTCTCGTTTT
TCCAAGGAGTGCTACTCAACGTACTGGTATACTATAATATTATTAAGGAC
ATCTTTGGGTCGGATGTGGGAGACACCAATCTGGCTTCCCTGCTTCAGAA
TTTCCTCATCTGCATCGAAATGTTTATCGCGGCCGTGGCTCACATCTACA
GCTTCCCGCACCATCCGTTTCACATCAACTCGCCGCAGTACTGGAACAAC
CCGAACCATAGCTGGTGTCGCGCCTTCCTCTCCATGATGGACATATCCGA
CATGCAGGAGGATGTCACCGAGCATCTGGGCGTCGTGGGCAGTTCACTGA
GTCGTCGCTTCCAGGGACGCAGCACATACCAGCCGCTGGCGCGCAGTCCT
CGCCGCTCCAGCAGTGAGTCCGAGTATCTGATCAGCAAGCGGCAAGATCA
GCAGCTGCCGGGCAACTCGTCACAATCAGCAGGCGTGGCCGACGATGGGA
ACAGTAGCAATAGCAACTACCAACAACAACAACTACACTTGCCGGGAGCG
GCAGGCTCTCAGCCGTCGACCCGTCAACGCGACACACTGCATCTTCGCGA
GCGCGAAAGGGATCCGGGTGCGGGTGCTGGCGGCGGTGGCAGTTTCCTGC
GCCTGCCCCCTGGTGCCGCGTCGGCAGCGGCGCCAATTCCCGAGTCCAAC
GATGATTATGCCCTGCTGTTGGGTGCGGGCGCAGGCAGGTGAAAGCTTTC
TAGACCAT

BS08426.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:52:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG5850-RG 1827 CG5850-PG 1..1476 17..1492 7380 100 Plus
CG5850-RD 1476 CG5850-PD 1..1476 17..1492 7380 100 Plus
CG5850-RA 1476 CG5850-PA 1..1476 17..1492 7380 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:52:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG5850-RG 2744 CG5850-RG 364..1839 17..1492 7380 100 Plus
CG5850-RD 3946 CG5850-RD 364..1839 17..1492 7380 100 Plus
CG5850-RA 2744 CG5850-RA 364..1839 17..1492 7380 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:52:31
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9961729..9962062 1229..896 1670 100 Minus
2L 23513712 2L 9963093..9963392 316..17 1500 100 Minus
2L 23513712 2L 9962735..9963013 594..316 1395 100 Minus
2L 23513712 2L 9961355..9961619 1492..1228 1325 100 Minus
2L 23513712 2L 9962471..9962677 801..595 1035 100 Minus
2L 23513712 2L 9962318..9962414 898..802 485 100 Minus
Blast to na_te.dros performed on 2014-11-27 06:52:32 has no hits.

BS08426.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:03:30 Download gff for BS08426.complete
Subject Subject Range Query Range Percent Splice Strand
CG5850-RA 1..1476 17..1492 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:41:31 Download gff for BS08426.complete
Subject Subject Range Query Range Percent Splice Strand
CG5850-RA 370..1853 10..1492 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:57:22 Download gff for BS08426.complete
Subject Subject Range Query Range Percent Splice Strand
CG5850-RA 364..1838 17..1491 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:03:31 Download gff for BS08426.complete
Subject Subject Range Query Range Percent Splice Strand
CG5850-RA 370..1853 10..1492 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:56:50 Download gff for BS08426.complete
Subject Subject Range Query Range Percent Splice Strand
CG5850-RA 364..1838 17..1491 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:56:50 Download gff for BS08426.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9962735..9963012 317..594 100 <- Minus
2L 9963093..9963392 17..316 100   Minus
2L 9961729..9962059 899..1229 100 <- Minus
2L 9962318..9962414 802..898 100 <- Minus
2L 9962471..9962677 595..801 100 <- Minus
2L 9961356..9961617 1230..1491 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:57:22 Download gff for BS08426.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9961356..9961617 1230..1491 100 <- Minus
arm_2L 9961729..9962059 899..1229 100 <- Minus
arm_2L 9962318..9962414 802..898 100 <- Minus
arm_2L 9962471..9962677 595..801 100 <- Minus
arm_2L 9962735..9963012 317..594 100 <- Minus
arm_2L 9963093..9963392 17..316 100   Minus

BS08426.pep Sequence

Translation from 16 to 1491

> BS08426.pep
MCSLDVRRFFEEWRIWIRPLLIITYVIFAIIVVPLLIVNSVKDGFQRNDQ
LILIGGLFVLSAVPVSIWHIIQHVIHFTKPILQKHIIRILWMVPIYALNA
WIGLFFPKHSIYVDSLRECYEAYVIYNFMVYLLNYLNLGMDLEATMEYKP
QVPHFFPLCCMRPWVMGREFIHNCKHGILQYTVVRPITTFISVICELCGV
YGEGEFAGNVAFPYIVVVNNISQFVAMYCLVLFYRANKEDLKPMKPIPKF
LCIKAVVFFSFFQGVLLNVLVYYNIIKDIFGSDVGDTNLASLLQNFLICI
EMFIAAVAHIYSFPHHPFHINSPQYWNNPNHSWCRAFLSMMDISDMQEDV
TEHLGVVGSSLSRRFQGRSTYQPLARSPRRSSSESEYLISKRQDQQLPGN
SSQSAGVADDGNSSNSNYQQQQLHLPGAAGSQPSTRQRDTLHLRERERDP
GAGAGGGGSFLRLPPGAASAAAPIPESNDDYALLLGAGAGR*

BS08426.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:20:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG5850-PG 608 CG5850-PG 1..491 1..491 2607 100 Plus
CG5850-PD 491 CG5850-PD 1..491 1..491 2607 100 Plus
CG5850-PA 491 CG5850-PA 1..491 1..491 2607 100 Plus
CG5850-PC 490 CG5850-PC 1..490 1..491 2591 99.8 Plus
CG5850-PF 469 CG5850-PF 1..469 1..491 2463 95.3 Plus