Clone Sequence Records
BS08426.3prime Sequence
923 bp (803 high quality bases) assembled on 2006-01-10
> BS08426.3prime
ATGGTCTAGAAAGCTTTCACCTGCCTGCGCCCGCACCCAACAGCAGGGCA
TAATCATCGTTGGACTCGGGAATTGGCGCCGCTGCCGACGCGGCACCAGG
GGGCAGGCGCAGGAAACTGCCACCGCCGCCAGCACCCGCACCCGGATCCC
TTTCGCGCTCGCGAAGATGCAGTGTGTCGCGTTGACGGGTCGACGGCTGA
GAGCCTGCCGCTCCCGGCAAGTGTAGTTGTTGTTGTTGGTAGTTGCTATT
GCTACTGTTCCCATCGTCGGCCACGCCTGCTGATTGTGACGAGTTGCCCG
GCAGCTGCTGATCTTGCCGCTTGCTGATCAGATACTCGGACTCACTGCTG
GAGCGGCGAGGACTGCGCGCCAGCGGCTGGTATGTGCTGCGTCCCTGGAA
GCGACGACTCAGTGAACTGCCCACGACGCCCAGATGCTCGGTGACATCCT
CCTGCATGTCGGATATGTCCATCATGGAGAGGAAGGCGCGACACCAGCTA
TGGTTCGGGTTGTTCCAGTACTGCGGCGAGTTGATGTGAAACGGATGGTG
CGGGAAGCTGTAGATGTGAGCCACGGCCGCGATAAACATTTCGATGCAGA
TGAGGAAATTCTGAAGCAGGGAAGCCAGATTGGTGTCTCCCACATCCGAC
CCAAAGATGTCCTTAATAATATTATAGTATACCAGTACGTTGAGTAGCAC
TCCTTGGAAAAACGAGAAAAACACCACAGCCTTGATGCACAGGAATTTGG
GAATAGGCTTCATTGGTTTGAGATCCTCCTTGTTTGCACGGTAAAATAGC
ACCAGGCAATACATGGCCACGAACTGGGATATATTGTTGAACACCCACAT
ATAGGGGAAGGCCACGTTGCCCCGCAACTCGCCCTCGCCGTAAACGCCGC
ATAGCTCGCAGATGACAGAGATA
BS08426.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:06:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5850-PA | 1476 | CG5850-RA | 653..1476 | 840..17 | 4120 | 100 | Minus |
CG5850-PB | 1710 | CG5850-RB | 653..1472 | 840..21 | 4100 | 100 | Minus |
CG5850-PA | 1476 | CG5850-RA | 570..617 | 923..876 | 240 | 100 | Minus |
CG5850-PB | 1710 | CG5850-RB | 570..617 | 923..876 | 240 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:05:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5850-RG | 2744 | CG5850-RG | 933..1839 | 923..17 | 4430 | 99.4 | Minus |
CG5850-RD | 3946 | CG5850-RD | 933..1839 | 923..17 | 4430 | 99.4 | Minus |
CG5850-RA | 2744 | CG5850-RA | 933..1839 | 923..17 | 4430 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:05:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9961729..9962062 | 280..613 | 1670 | 100 | Plus |
2L | 23513712 | 2L | 9961355..9961619 | 17..281 | 1325 | 100 | Plus |
2L | 23513712 | 2L | 9962471..9962677 | 708..914 | 930 | 96.6 | Plus |
2L | 23513712 | 2L | 9962318..9962414 | 611..707 | 485 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 18:05:33 has no hits.
BS08426.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:40:20 Download gff for
BS08426.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5850-PA | 571..1476 | 17..922 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:39:22 Download gff for
BS08426.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5850-PA | 571..1476 | 17..922 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:11:06 Download gff for
BS08426.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5850-RA | 934..1839 | 17..922 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:58:28 Download gff for
BS08426.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5850-RA | 934..1839 | 17..922 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:58:28 Download gff for
BS08426.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9961355..9961617 | 17..279 | 100 | <- | Plus |
2L | 9961729..9962059 | 280..610 | 100 | <- | Plus |
2L | 9962318..9962414 | 611..707 | 100 | <- | Plus |
2L | 9962471..9962686 | 708..922 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:11:06 Download gff for
BS08426.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9961355..9961617 | 17..279 | 100 | <- | Plus |
arm_2L | 9961729..9962059 | 280..610 | 100 | <- | Plus |
arm_2L | 9962318..9962414 | 611..707 | 100 | <- | Plus |
arm_2L | 9962471..9962686 | 708..922 | 95 | | Plus |
BS08426.5prime Sequence
842 bp (841 high quality bases) assembled on 2006-01-10
> BS08426.5prime
GAAGTTATCAGTCGACATGTGCAGCTTGGACGTAAGACGCTTCTTCGAGG
AGTGGCGCATCTGGATACGCCCGCTGCTCATTATCACCTATGTCATCTTC
GCCATCATCGTGGTCCCGCTGCTCATTGTGAACTCCGTGAAGGATGGCTT
CCAGCGCAATGACCAGCTCATTCTCATCGGCGGTCTGTTTGTGTTGTCCG
CAGTGCCCGTGTCCATTTGGCATATCATCCAACACGTCATTCATTTTACC
AAGCCCATACTGCAGAAGCACATAATCCGCATATTGTGGATGGTGCCTAT
CTACGCCTTGAACGCGTGGATCGGCCTTTTCTTTCCGAAGCACTCCATCT
ACGTGGACTCACTGCGCGAGTGCTACGAGGCGTACGTTATCTACAACTTC
ATGGTGTACCTGCTCAACTACTTGAATCTCGGTATGGACCTAGAGGCCAC
AATGGAGTACAAGCCGCAGGTGCCTCACTTCTTTCCGCTCTGCTGCATGC
GGCCGTGGGTGATGGGTCGTGAATTCATCCACAACTGCAAGCACGGCATC
CTCCAGTACACGGTCGTGCGCCCCATTACCACCTTTATCTCTGTCATCTG
CGAGCTATGCGGCGTTTACGGCGAGGGCGAGTTTGCGGGCAACGTGGCCT
TCCCCTATATTGTGGTGGTCAACAATATATCCCAGTTCGTGGCCATGTAT
TGCCTGGTGCTATTTTACCGTGCAAACAAGGAGGATCTCAAACCAATGAA
GCCTATTCCCAAATTCCTGTGCATCAAGGCTGTGGTGTTTTTCTCGTTTT
TCCAAGGAGTGCTACTCAACGTACTGGTATACTATAATATTA
BS08426.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:06:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5850-PB | 1710 | CG5850-RB | 1..826 | 17..842 | 4130 | 100 | Plus |
CG5850-PA | 1476 | CG5850-RA | 1..826 | 17..842 | 4130 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:46:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5850-RC | 2935 | CG5850-RC | 558..1383 | 17..842 | 4130 | 100 | Plus |
CG5850-RG | 2744 | CG5850-RG | 364..1189 | 17..842 | 4130 | 100 | Plus |
CG5850-RF | 2678 | CG5850-RF | 364..1189 | 17..842 | 4130 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:46:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9963093..9963392 | 316..17 | 1500 | 100 | Minus |
2L | 23513712 | 2L | 9962735..9963013 | 594..316 | 1395 | 100 | Minus |
2L | 23513712 | 2L | 9962471..9962677 | 801..595 | 1035 | 100 | Minus |
2L | 23513712 | 2L | 9962374..9962414 | 842..802 | 205 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 07:46:09 has no hits.
BS08426.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:40:21 Download gff for
BS08426.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5850-PA | 1..825 | 17..841 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:39:23 Download gff for
BS08426.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5850-PA | 1..825 | 17..841 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:49:57 Download gff for
BS08426.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5850-RF | 356..1188 | 10..841 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:04:19 Download gff for
BS08426.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5850-RF | 356..1188 | 10..841 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:04:19 Download gff for
BS08426.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9963093..9963398 | 11..316 | 98 | <- | Minus |
2L | 9962375..9962414 | 802..841 | 100 | <- | Minus |
2L | 9962471..9962677 | 595..801 | 100 | <- | Minus |
2L | 9962735..9963012 | 317..594 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:49:57 Download gff for
BS08426.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9962375..9962414 | 802..841 | 100 | <- | Minus |
arm_2L | 9962471..9962677 | 595..801 | 100 | <- | Minus |
arm_2L | 9962735..9963012 | 317..594 | 100 | <- | Minus |
arm_2L | 9963093..9963398 | 11..316 | 98 | <- | Minus |
BS08426.complete Sequence
1508 bp (1508 high quality bases) assembled on 2006-01-18
GenBank Submission: FJ636150
> BS08426.complete
GAAGTTATCAGTCGACATGTGCAGCTTGGACGTAAGACGCTTCTTCGAGG
AGTGGCGCATCTGGATACGCCCGCTGCTCATTATCACCTATGTCATCTTC
GCCATCATCGTGGTCCCGCTGCTCATTGTGAACTCCGTGAAGGATGGCTT
CCAGCGCAATGACCAGCTCATTCTCATCGGCGGTCTGTTTGTGTTGTCCG
CAGTGCCCGTGTCCATTTGGCATATCATCCAACACGTCATTCATTTTACC
AAGCCCATACTGCAGAAGCACATAATCCGCATATTGTGGATGGTGCCTAT
CTACGCCTTGAACGCGTGGATCGGCCTTTTCTTTCCGAAGCACTCCATCT
ACGTGGACTCACTGCGCGAGTGCTACGAGGCGTACGTTATCTACAACTTC
ATGGTGTACCTGCTCAACTACTTGAATCTCGGTATGGACCTAGAGGCCAC
AATGGAGTACAAGCCGCAGGTGCCTCACTTCTTTCCGCTCTGCTGCATGC
GGCCGTGGGTGATGGGTCGTGAATTCATCCACAACTGCAAGCACGGCATC
CTCCAGTACACGGTCGTGCGCCCCATTACCACCTTTATCTCTGTCATCTG
CGAGCTATGCGGCGTTTACGGCGAGGGCGAGTTTGCGGGCAACGTGGCCT
TCCCCTATATTGTGGTGGTCAACAATATATCCCAGTTCGTGGCCATGTAT
TGCCTGGTGCTATTTTACCGTGCAAACAAGGAGGATCTCAAACCAATGAA
GCCTATTCCCAAATTCCTGTGCATCAAGGCTGTGGTGTTTTTCTCGTTTT
TCCAAGGAGTGCTACTCAACGTACTGGTATACTATAATATTATTAAGGAC
ATCTTTGGGTCGGATGTGGGAGACACCAATCTGGCTTCCCTGCTTCAGAA
TTTCCTCATCTGCATCGAAATGTTTATCGCGGCCGTGGCTCACATCTACA
GCTTCCCGCACCATCCGTTTCACATCAACTCGCCGCAGTACTGGAACAAC
CCGAACCATAGCTGGTGTCGCGCCTTCCTCTCCATGATGGACATATCCGA
CATGCAGGAGGATGTCACCGAGCATCTGGGCGTCGTGGGCAGTTCACTGA
GTCGTCGCTTCCAGGGACGCAGCACATACCAGCCGCTGGCGCGCAGTCCT
CGCCGCTCCAGCAGTGAGTCCGAGTATCTGATCAGCAAGCGGCAAGATCA
GCAGCTGCCGGGCAACTCGTCACAATCAGCAGGCGTGGCCGACGATGGGA
ACAGTAGCAATAGCAACTACCAACAACAACAACTACACTTGCCGGGAGCG
GCAGGCTCTCAGCCGTCGACCCGTCAACGCGACACACTGCATCTTCGCGA
GCGCGAAAGGGATCCGGGTGCGGGTGCTGGCGGCGGTGGCAGTTTCCTGC
GCCTGCCCCCTGGTGCCGCGTCGGCAGCGGCGCCAATTCCCGAGTCCAAC
GATGATTATGCCCTGCTGTTGGGTGCGGGCGCAGGCAGGTGAAAGCTTTC
TAGACCAT
BS08426.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:52:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5850-RG | 1827 | CG5850-PG | 1..1476 | 17..1492 | 7380 | 100 | Plus |
CG5850-RD | 1476 | CG5850-PD | 1..1476 | 17..1492 | 7380 | 100 | Plus |
CG5850-RA | 1476 | CG5850-PA | 1..1476 | 17..1492 | 7380 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:52:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5850-RG | 2744 | CG5850-RG | 364..1839 | 17..1492 | 7380 | 100 | Plus |
CG5850-RD | 3946 | CG5850-RD | 364..1839 | 17..1492 | 7380 | 100 | Plus |
CG5850-RA | 2744 | CG5850-RA | 364..1839 | 17..1492 | 7380 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:52:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9961729..9962062 | 1229..896 | 1670 | 100 | Minus |
2L | 23513712 | 2L | 9963093..9963392 | 316..17 | 1500 | 100 | Minus |
2L | 23513712 | 2L | 9962735..9963013 | 594..316 | 1395 | 100 | Minus |
2L | 23513712 | 2L | 9961355..9961619 | 1492..1228 | 1325 | 100 | Minus |
2L | 23513712 | 2L | 9962471..9962677 | 801..595 | 1035 | 100 | Minus |
2L | 23513712 | 2L | 9962318..9962414 | 898..802 | 485 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 06:52:32 has no hits.
BS08426.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:03:30 Download gff for
BS08426.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5850-RA | 1..1476 | 17..1492 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:41:31 Download gff for
BS08426.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5850-RA | 370..1853 | 10..1492 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:57:22 Download gff for
BS08426.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5850-RA | 364..1838 | 17..1491 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:03:31 Download gff for
BS08426.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5850-RA | 370..1853 | 10..1492 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:56:50 Download gff for
BS08426.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5850-RA | 364..1838 | 17..1491 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:56:50 Download gff for
BS08426.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9962735..9963012 | 317..594 | 100 | <- | Minus |
2L | 9963093..9963392 | 17..316 | 100 | | Minus |
2L | 9961729..9962059 | 899..1229 | 100 | <- | Minus |
2L | 9962318..9962414 | 802..898 | 100 | <- | Minus |
2L | 9962471..9962677 | 595..801 | 100 | <- | Minus |
2L | 9961356..9961617 | 1230..1491 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:57:22 Download gff for
BS08426.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9961356..9961617 | 1230..1491 | 100 | <- | Minus |
arm_2L | 9961729..9962059 | 899..1229 | 100 | <- | Minus |
arm_2L | 9962318..9962414 | 802..898 | 100 | <- | Minus |
arm_2L | 9962471..9962677 | 595..801 | 100 | <- | Minus |
arm_2L | 9962735..9963012 | 317..594 | 100 | <- | Minus |
arm_2L | 9963093..9963392 | 17..316 | 100 | | Minus |
BS08426.pep Sequence
Translation from 16 to 1491
> BS08426.pep
MCSLDVRRFFEEWRIWIRPLLIITYVIFAIIVVPLLIVNSVKDGFQRNDQ
LILIGGLFVLSAVPVSIWHIIQHVIHFTKPILQKHIIRILWMVPIYALNA
WIGLFFPKHSIYVDSLRECYEAYVIYNFMVYLLNYLNLGMDLEATMEYKP
QVPHFFPLCCMRPWVMGREFIHNCKHGILQYTVVRPITTFISVICELCGV
YGEGEFAGNVAFPYIVVVNNISQFVAMYCLVLFYRANKEDLKPMKPIPKF
LCIKAVVFFSFFQGVLLNVLVYYNIIKDIFGSDVGDTNLASLLQNFLICI
EMFIAAVAHIYSFPHHPFHINSPQYWNNPNHSWCRAFLSMMDISDMQEDV
TEHLGVVGSSLSRRFQGRSTYQPLARSPRRSSSESEYLISKRQDQQLPGN
SSQSAGVADDGNSSNSNYQQQQLHLPGAAGSQPSTRQRDTLHLRERERDP
GAGAGGGGSFLRLPPGAASAAAPIPESNDDYALLLGAGAGR*
BS08426.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:20:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5850-PG | 608 | CG5850-PG | 1..491 | 1..491 | 2607 | 100 | Plus |
CG5850-PD | 491 | CG5850-PD | 1..491 | 1..491 | 2607 | 100 | Plus |
CG5850-PA | 491 | CG5850-PA | 1..491 | 1..491 | 2607 | 100 | Plus |
CG5850-PC | 490 | CG5850-PC | 1..490 | 1..491 | 2591 | 99.8 | Plus |
CG5850-PF | 469 | CG5850-PF | 1..469 | 1..491 | 2463 | 95.3 | Plus |