Clone Sequence Records
BS08427.3prime Sequence
777 bp (776 high quality bases) assembled on 2006-01-10
> BS08427.3prime
ATGGTCTAGAAAGCTTTTAAATGTCGGATTTCAGGAGGTTGTCGGCCAGT
TGCACCTTCTCACCGGGCTTAAAGGCGGGCATGCCCAAATAGGGGCAAGT
GGAGCAGCGGAAGGCGTCGCCGAGATAACAATTTCCACAGCTTGACTTGG
CATTCTCGGTGGCCTTCTGGCTCTGTTTTTCAGTCTCCAATTCCTCGGCC
AGCCCGCAGGAGCAGTTTTTGCACGCCTTGCGCTTGCCCGTGGTGCTACA
GACACGCAGACCAGCCGGATCCGGCTTCTGTTTGTCTTCCTCGTCCAGCA
GCTCCTCCTCATCGATCAGTTCCTCATCGTCACCGCTTATCTTCCACACA
TTGACTGCACTGGCGTTCTTCTTTGCGAATGACAACCTGGCTGAGGATCC
TGTCTCGTAGCCAGGCTTCTCGGCGGTCAAAGCATCTGGAGAGTCCTCGC
GACAGTTTATGAATCCGGATAGCTTGATCTCCTGCAGCAAACTAGCCGCC
GGACCGATGTAGGACACCAAATGCAGTTTGCCACTCGGTTTCAGCATGTG
CAGCAGTTTTACGTAACTGTCGGTCAGCTGGGCGCACTCGATCACAATCA
GGTCGAAACTGGAGTTGGCATAGGAAGAAAACGAAAGGCGGTGCACATTT
TCCAAAGCCACATCGCCGCCAGTGGCCGCCTTTAGTTGCTCCACGCGCTT
GTCCAAGTCGGCGCTGTCCGTCCATATGTATAGGGATTTTTGTAGACCCT
TAAAGTTCTCCATGTCGACTGATAACT
BS08427.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:06:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4180-PA | 747 | l(2)35Bg-RA | 1..747 | 763..17 | 3735 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 15:23:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CIAPIN1-RA | 2358 | CG4180-RA | 87..833 | 763..17 | 3735 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 15:22:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 15038054..15038550 | 131..627 | 2485 | 100 | Plus |
2L | 23513712 | 2L | 15038640..15038775 | 628..763 | 680 | 100 | Plus |
2L | 23513712 | 2L | 15037872..15037985 | 17..130 | 570 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-31 15:22:55 has no hits.
BS08427.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:40:22 Download gff for
BS08427.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4180-PA | 1..747 | 17..763 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:39:25 Download gff for
BS08427.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4180-PA | 1..747 | 17..763 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:14:04 Download gff for
BS08427.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CIAPIN1-RA | 79..836 | 11..771 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:35:05 Download gff for
BS08427.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CIAPIN1-RA | 79..836 | 11..771 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:35:05 Download gff for
BS08427.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 15037869..15037985 | 11..130 | 97 | <- | Plus |
2L | 15038054..15038550 | 131..627 | 100 | <- | Plus |
2L | 15038640..15038783 | 628..771 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:14:04 Download gff for
BS08427.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 15037869..15037985 | 11..130 | 97 | <- | Plus |
arm_2L | 15038054..15038550 | 131..627 | 100 | <- | Plus |
arm_2L | 15038640..15038783 | 628..771 | 97 | | Plus |
BS08427.5prime Sequence
777 bp (776 high quality bases) assembled on 2006-01-10
> BS08427.5prime
GAAGTTATCAGTCGACATGGAGAACTTTAAGGGTCTACAAAAATCCCTAT
ACATATGGACGGACAGCGCCGACTTGGACAAGCGCGTGGAGCAACTAAAG
GCGGCCACTGGCGGCGATGTGGCTTTGGAAAATGTGCACCGCCTTTCGTT
TTCTTCCTATGCCAACTCCAGTTTCGACCTGATTGTGATCGAGTGCGCCC
AGCTGACCGACAGTTACGTAAAACTGCTGCACATGCTGAAACCGAGTGGC
AAACTGCATTTGGTGTCCTACATCGGTCCGGCGGCTAGTTTGCTGCAGGA
GATCAAGCTATCCGGATTCATAAACTGTCGCGAGGACTCTCCAGATGCTT
TGACCGCCGAGAAGCCTGGCTACGAGACAGGATCCTCAGCCAGGTTGTCA
TTCGCAAAGAAGAACGCCAGTGCAGTCAATGTGTGGAAGATAAGCGGTGA
CGATGAGGAACTGATCGATGAGGAGGAGCTGCTGGACGAGGAAGACAAAC
AGAAGCCGGATCCGGCTGGTCTGCGTGTCTGTAGCACCACGGGCAAGCGC
AAGGCGTGCAAAAACTGCTCCTGCGGGCTGGCCGAGGAATTGGAGACTGA
AAAACAGAGCCAGAAGGCCACCGAGAATGCCAAGTCAAGCTGTGGAAATT
GTTATCTCGGCGACGCCTTCCGCTGCTCCACTTGCCCCTATTTGGGCATG
CCCGCCTTTAAGCCCGGTGAGAAGGTGCAACTGGCCGACAACCTCCTGAA
ATCCGACATTTAAAAGCTTTCTAGACC
BS08427.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:06:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4180-PA | 747 | l(2)35Bg-RA | 1..747 | 17..763 | 3735 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:46:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CIAPIN1-RA | 2358 | CG4180-RA | 87..833 | 17..763 | 3735 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:46:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 15038054..15038550 | 649..153 | 2485 | 100 | Minus |
2L | 23513712 | 2L | 15038640..15038775 | 152..17 | 680 | 100 | Minus |
2L | 23513712 | 2L | 15037872..15037985 | 763..650 | 570 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:46:27 has no hits.
BS08427.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:40:23 Download gff for
BS08427.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4180-PA | 1..747 | 17..763 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:39:26 Download gff for
BS08427.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4180-PA | 1..747 | 17..763 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:00:18 Download gff for
BS08427.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CIAPIN1-RA | 79..836 | 9..769 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:33:11 Download gff for
BS08427.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CIAPIN1-RA | 79..836 | 9..769 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:33:11 Download gff for
BS08427.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 15037869..15037985 | 650..769 | 97 | <- | Minus |
2L | 15038054..15038550 | 153..649 | 100 | <- | Minus |
2L | 15038640..15038783 | 9..152 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:00:18 Download gff for
BS08427.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 15037869..15037985 | 650..769 | 97 | <- | Minus |
arm_2L | 15038054..15038550 | 153..649 | 100 | <- | Minus |
arm_2L | 15038640..15038783 | 9..152 | 97 | | Minus |
BS08427.complete Sequence
779 bp (779 high quality bases) assembled on 2006-01-18
GenBank Submission: FJ636151
> BS08427.complete
GAAGTTATCAGTCGACATGGAGAACTTTAAGGGTCTACAAAAATCCCTAT
ACATATGGACGGACAGCGCCGACTTGGACAAGCGCGTGGAGCAACTAAAG
GCGGCCACTGGCGGCGATGTGGCTTTGGAAAATGTGCACCGCCTTTCGTT
TTCTTCCTATGCCAACTCCAGTTTCGACCTGATTGTGATCGAGTGCGCCC
AGCTGACCGACAGTTACGTAAAACTGCTGCACATGCTGAAACCGAGTGGC
AAACTGCATTTGGTGTCCTACATCGGTCCGGCGGCTAGTTTGCTGCAGGA
GATCAAGCTATCCGGATTCATAAACTGTCGCGAGGACTCTCCAGATGCTT
TGACCGCCGAGAAGCCTGGCTACGAGACAGGATCCTCAGCCAGGTTGTCA
TTCGCAAAGAAGAACGCCAGTGCAGTCAATGTGTGGAAGATAAGCGGTGA
CGATGAGGAACTGATCGATGAGGAGGAGCTGCTGGACGAGGAAGACAAAC
AGAAGCCGGATCCGGCTGGTCTGCGTGTCTGTAGCACCACGGGCAAGCGC
AAGGCGTGCAAAAACTGCTCCTGCGGGCTGGCCGAGGAATTGGAGACTGA
AAAACAGAGCCAGAAGGCCACCGAGAATGCCAAGTCAAGCTGTGGAAATT
GTTATCTCGGCGACGCCTTCCGCTGCTCCACTTGCCCCTATTTGGGCATG
CCCGCCTTTAAGCCCGGTGAGAAGGTGCAACTGGCCGACAACCTCCTGAA
ATCCGACATTTAAAAGCTTTCTAGACCAT
BS08427.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:56:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CIAPIN1-RA | 747 | CG4180-PA | 1..747 | 17..763 | 3735 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:56:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CIAPIN1-RA | 2358 | CG4180-RA | 87..833 | 17..763 | 3735 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:56:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 15038054..15038550 | 649..153 | 2485 | 100 | Minus |
2L | 23513712 | 2L | 15038640..15038775 | 152..17 | 680 | 100 | Minus |
2L | 23513712 | 2L | 15037872..15037985 | 763..650 | 570 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 12:56:09 has no hits.
BS08427.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:48:37 Download gff for
BS08427.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)35Bg-RA | 1..747 | 17..763 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:36:47 Download gff for
BS08427.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)35Bg-RA | 75..832 | 9..769 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:25:40 Download gff for
BS08427.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CIAPIN1-RA | 87..831 | 17..761 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:48:37 Download gff for
BS08427.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)35Bg-RA | 75..832 | 9..769 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:07:36 Download gff for
BS08427.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CIAPIN1-RA | 87..831 | 17..761 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:07:36 Download gff for
BS08427.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 15037874..15037985 | 650..761 | 100 | <- | Minus |
2L | 15038054..15038550 | 153..649 | 100 | <- | Minus |
2L | 15038640..15038775 | 17..152 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:25:40 Download gff for
BS08427.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 15038640..15038775 | 17..152 | 100 | | Minus |
arm_2L | 15037874..15037985 | 650..761 | 100 | <- | Minus |
arm_2L | 15038054..15038550 | 153..649 | 100 | <- | Minus |
BS08427.pep Sequence
Translation from 16 to 762
> BS08427.pep
MENFKGLQKSLYIWTDSADLDKRVEQLKAATGGDVALENVHRLSFSSYAN
SSFDLIVIECAQLTDSYVKLLHMLKPSGKLHLVSYIGPAASLLQEIKLSG
FINCREDSPDALTAEKPGYETGSSARLSFAKKNASAVNVWKISGDDEELI
DEEELLDEEDKQKPDPAGLRVCSTTGKRKACKNCSCGLAEELETEKQSQK
ATENAKSSCGNCYLGDAFRCSTCPYLGMPAFKPGEKVQLADNLLKSDI*
BS08427.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:32:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CIAPIN1-PA | 248 | CG4180-PA | 1..248 | 1..248 | 1288 | 100 | Plus |