Clone BS08427 Report

Search the DGRC for BS08427

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:84
Well:27
Vector:pDNR-Dual
Associated Gene/TranscriptCIAPIN1-RA
Protein status:BS08427.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08427.3prime Sequence

777 bp (776 high quality bases) assembled on 2006-01-10

> BS08427.3prime
ATGGTCTAGAAAGCTTTTAAATGTCGGATTTCAGGAGGTTGTCGGCCAGT
TGCACCTTCTCACCGGGCTTAAAGGCGGGCATGCCCAAATAGGGGCAAGT
GGAGCAGCGGAAGGCGTCGCCGAGATAACAATTTCCACAGCTTGACTTGG
CATTCTCGGTGGCCTTCTGGCTCTGTTTTTCAGTCTCCAATTCCTCGGCC
AGCCCGCAGGAGCAGTTTTTGCACGCCTTGCGCTTGCCCGTGGTGCTACA
GACACGCAGACCAGCCGGATCCGGCTTCTGTTTGTCTTCCTCGTCCAGCA
GCTCCTCCTCATCGATCAGTTCCTCATCGTCACCGCTTATCTTCCACACA
TTGACTGCACTGGCGTTCTTCTTTGCGAATGACAACCTGGCTGAGGATCC
TGTCTCGTAGCCAGGCTTCTCGGCGGTCAAAGCATCTGGAGAGTCCTCGC
GACAGTTTATGAATCCGGATAGCTTGATCTCCTGCAGCAAACTAGCCGCC
GGACCGATGTAGGACACCAAATGCAGTTTGCCACTCGGTTTCAGCATGTG
CAGCAGTTTTACGTAACTGTCGGTCAGCTGGGCGCACTCGATCACAATCA
GGTCGAAACTGGAGTTGGCATAGGAAGAAAACGAAAGGCGGTGCACATTT
TCCAAAGCCACATCGCCGCCAGTGGCCGCCTTTAGTTGCTCCACGCGCTT
GTCCAAGTCGGCGCTGTCCGTCCATATGTATAGGGATTTTTGTAGACCCT
TAAAGTTCTCCATGTCGACTGATAACT

BS08427.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:06:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG4180-PA 747 l(2)35Bg-RA 1..747 763..17 3735 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 15:23:00
Subject Length Description Subject Range Query Range Score Percent Strand
CIAPIN1-RA 2358 CG4180-RA 87..833 763..17 3735 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 15:22:51
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 15038054..15038550 131..627 2485 100 Plus
2L 23513712 2L 15038640..15038775 628..763 680 100 Plus
2L 23513712 2L 15037872..15037985 17..130 570 100 Plus
Blast to na_te.dros performed on 2015-01-31 15:22:55 has no hits.

BS08427.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:40:22 Download gff for BS08427.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4180-PA 1..747 17..763 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:39:25 Download gff for BS08427.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4180-PA 1..747 17..763 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:14:04 Download gff for BS08427.3prime
Subject Subject Range Query Range Percent Splice Strand
CIAPIN1-RA 79..836 11..771 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:35:05 Download gff for BS08427.3prime
Subject Subject Range Query Range Percent Splice Strand
CIAPIN1-RA 79..836 11..771 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:35:05 Download gff for BS08427.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 15037869..15037985 11..130 97 <- Plus
2L 15038054..15038550 131..627 100 <- Plus
2L 15038640..15038783 628..771 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:14:04 Download gff for BS08427.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 15037869..15037985 11..130 97 <- Plus
arm_2L 15038054..15038550 131..627 100 <- Plus
arm_2L 15038640..15038783 628..771 97   Plus

BS08427.5prime Sequence

777 bp (776 high quality bases) assembled on 2006-01-10

> BS08427.5prime
GAAGTTATCAGTCGACATGGAGAACTTTAAGGGTCTACAAAAATCCCTAT
ACATATGGACGGACAGCGCCGACTTGGACAAGCGCGTGGAGCAACTAAAG
GCGGCCACTGGCGGCGATGTGGCTTTGGAAAATGTGCACCGCCTTTCGTT
TTCTTCCTATGCCAACTCCAGTTTCGACCTGATTGTGATCGAGTGCGCCC
AGCTGACCGACAGTTACGTAAAACTGCTGCACATGCTGAAACCGAGTGGC
AAACTGCATTTGGTGTCCTACATCGGTCCGGCGGCTAGTTTGCTGCAGGA
GATCAAGCTATCCGGATTCATAAACTGTCGCGAGGACTCTCCAGATGCTT
TGACCGCCGAGAAGCCTGGCTACGAGACAGGATCCTCAGCCAGGTTGTCA
TTCGCAAAGAAGAACGCCAGTGCAGTCAATGTGTGGAAGATAAGCGGTGA
CGATGAGGAACTGATCGATGAGGAGGAGCTGCTGGACGAGGAAGACAAAC
AGAAGCCGGATCCGGCTGGTCTGCGTGTCTGTAGCACCACGGGCAAGCGC
AAGGCGTGCAAAAACTGCTCCTGCGGGCTGGCCGAGGAATTGGAGACTGA
AAAACAGAGCCAGAAGGCCACCGAGAATGCCAAGTCAAGCTGTGGAAATT
GTTATCTCGGCGACGCCTTCCGCTGCTCCACTTGCCCCTATTTGGGCATG
CCCGCCTTTAAGCCCGGTGAGAAGGTGCAACTGGCCGACAACCTCCTGAA
ATCCGACATTTAAAAGCTTTCTAGACC

BS08427.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:06:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG4180-PA 747 l(2)35Bg-RA 1..747 17..763 3735 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:46:31
Subject Length Description Subject Range Query Range Score Percent Strand
CIAPIN1-RA 2358 CG4180-RA 87..833 17..763 3735 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:46:23
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 15038054..15038550 649..153 2485 100 Minus
2L 23513712 2L 15038640..15038775 152..17 680 100 Minus
2L 23513712 2L 15037872..15037985 763..650 570 100 Minus
Blast to na_te.dros performed on 2015-02-11 10:46:27 has no hits.

BS08427.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:40:23 Download gff for BS08427.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4180-PA 1..747 17..763 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:39:26 Download gff for BS08427.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4180-PA 1..747 17..763 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:00:18 Download gff for BS08427.5prime
Subject Subject Range Query Range Percent Splice Strand
CIAPIN1-RA 79..836 9..769 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:33:11 Download gff for BS08427.5prime
Subject Subject Range Query Range Percent Splice Strand
CIAPIN1-RA 79..836 9..769 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:33:11 Download gff for BS08427.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 15037869..15037985 650..769 97 <- Minus
2L 15038054..15038550 153..649 100 <- Minus
2L 15038640..15038783 9..152 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:00:18 Download gff for BS08427.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 15037869..15037985 650..769 97 <- Minus
arm_2L 15038054..15038550 153..649 100 <- Minus
arm_2L 15038640..15038783 9..152 97   Minus

BS08427.complete Sequence

779 bp (779 high quality bases) assembled on 2006-01-18

GenBank Submission: FJ636151

> BS08427.complete
GAAGTTATCAGTCGACATGGAGAACTTTAAGGGTCTACAAAAATCCCTAT
ACATATGGACGGACAGCGCCGACTTGGACAAGCGCGTGGAGCAACTAAAG
GCGGCCACTGGCGGCGATGTGGCTTTGGAAAATGTGCACCGCCTTTCGTT
TTCTTCCTATGCCAACTCCAGTTTCGACCTGATTGTGATCGAGTGCGCCC
AGCTGACCGACAGTTACGTAAAACTGCTGCACATGCTGAAACCGAGTGGC
AAACTGCATTTGGTGTCCTACATCGGTCCGGCGGCTAGTTTGCTGCAGGA
GATCAAGCTATCCGGATTCATAAACTGTCGCGAGGACTCTCCAGATGCTT
TGACCGCCGAGAAGCCTGGCTACGAGACAGGATCCTCAGCCAGGTTGTCA
TTCGCAAAGAAGAACGCCAGTGCAGTCAATGTGTGGAAGATAAGCGGTGA
CGATGAGGAACTGATCGATGAGGAGGAGCTGCTGGACGAGGAAGACAAAC
AGAAGCCGGATCCGGCTGGTCTGCGTGTCTGTAGCACCACGGGCAAGCGC
AAGGCGTGCAAAAACTGCTCCTGCGGGCTGGCCGAGGAATTGGAGACTGA
AAAACAGAGCCAGAAGGCCACCGAGAATGCCAAGTCAAGCTGTGGAAATT
GTTATCTCGGCGACGCCTTCCGCTGCTCCACTTGCCCCTATTTGGGCATG
CCCGCCTTTAAGCCCGGTGAGAAGGTGCAACTGGCCGACAACCTCCTGAA
ATCCGACATTTAAAAGCTTTCTAGACCAT

BS08427.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:56:09
Subject Length Description Subject Range Query Range Score Percent Strand
CIAPIN1-RA 747 CG4180-PA 1..747 17..763 3735 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:56:11
Subject Length Description Subject Range Query Range Score Percent Strand
CIAPIN1-RA 2358 CG4180-RA 87..833 17..763 3735 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:56:07
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 15038054..15038550 649..153 2485 100 Minus
2L 23513712 2L 15038640..15038775 152..17 680 100 Minus
2L 23513712 2L 15037872..15037985 763..650 570 100 Minus
Blast to na_te.dros performed on 2014-11-27 12:56:09 has no hits.

BS08427.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:48:37 Download gff for BS08427.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)35Bg-RA 1..747 17..763 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:36:47 Download gff for BS08427.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)35Bg-RA 75..832 9..769 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:25:40 Download gff for BS08427.complete
Subject Subject Range Query Range Percent Splice Strand
CIAPIN1-RA 87..831 17..761 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:48:37 Download gff for BS08427.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)35Bg-RA 75..832 9..769 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:07:36 Download gff for BS08427.complete
Subject Subject Range Query Range Percent Splice Strand
CIAPIN1-RA 87..831 17..761 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:07:36 Download gff for BS08427.complete
Subject Subject Range Query Range Percent Splice Strand
2L 15037874..15037985 650..761 100 <- Minus
2L 15038054..15038550 153..649 100 <- Minus
2L 15038640..15038775 17..152 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:25:40 Download gff for BS08427.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 15038640..15038775 17..152 100   Minus
arm_2L 15037874..15037985 650..761 100 <- Minus
arm_2L 15038054..15038550 153..649 100 <- Minus

BS08427.pep Sequence

Translation from 16 to 762

> BS08427.pep
MENFKGLQKSLYIWTDSADLDKRVEQLKAATGGDVALENVHRLSFSSYAN
SSFDLIVIECAQLTDSYVKLLHMLKPSGKLHLVSYIGPAASLLQEIKLSG
FINCREDSPDALTAEKPGYETGSSARLSFAKKNASAVNVWKISGDDEELI
DEEELLDEEDKQKPDPAGLRVCSTTGKRKACKNCSCGLAEELETEKQSQK
ATENAKSSCGNCYLGDAFRCSTCPYLGMPAFKPGEKVQLADNLLKSDI*

BS08427.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:32:15
Subject Length Description Subject Range Query Range Score Percent Strand
CIAPIN1-PA 248 CG4180-PA 1..248 1..248 1288 100 Plus