Clone Sequence Records
BS08428.3prime Sequence
792 bp (790 high quality bases) assembled on 2006-01-10
> BS08428.3prime
ATGGTCTAGAAAGCTTTTAAGAATGAGCGTTTCGCAAATGCTTTTCATAG
TATCCCTTGTACTTGAATACTTTAATGCATTTTGTGCACTGAAACCGAAC
TTGGTGAGAAATCAAATGCTTTAAGTACTCTTTCTTTAAGATGAAAATAT
CGTCGCAACATTTGCAAAAGTAAGCAAAACTAACAGGTAAAAACGAGAAT
AGCTTTAAAGTATATCGGGCATTTTCCGAAATGGTATCCAAGTCAATATA
TTGGGTATATATATTGTAATGCCAAACTGAAATCTGATTAATAATGCCTT
TTATATCGCTGTTCGCCAGGTTGCATAACATTGTCTTGTTAACTTCTCTG
GTTAAAGCAAATATCTGTTGAGAAATAAAGTCCGGTTTCGCTGGCGGACA
AATTTTTCTATAATTCCAAATAGAATCGTACTTCCTGTAGATTTTGATGA
ATTGATCTGCCTTTTTTCGGATCGTTTCTAACTCGTCTGGCAATAATGTA
TCCTCGATCGGGTTATCTGTGATTGCCGGCAATCCAACCGCTTTTAATAT
TTCGCAACTGCTTATTGTTGCCAATTTGTTTAAACGCGTATTTGTATTGG
CGCAGGGATCTTCCGATTTTAGGTCGACGCAATTTTCCATCTTTAACTTG
CGGATCTTTGTGCTGTTAAACTCAGAAGCAAAACAATTAGTTTTGTCATT
AGATCGTATTTGGATTTTGTTTGTACTAGCTTTGGCACTGGTGGTCTGCA
CCCGTTTTACAATAATGGGGTTTGCCTTGGACTTTATTATTT
BS08428.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:06:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8961-PA | 1950 | tef-RA | 1175..1950 | 792..17 | 3880 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 07:19:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tef-RA | 2168 | CG8961-RA | 1278..2053 | 792..17 | 3880 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 07:19:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17054661..17055176 | 17..532 | 2580 | 100 | Plus |
| 2R | 25286936 | 2R | 17055235..17055494 | 533..792 | 1300 | 100 | Plus |
Blast to na_te.dros performed 2015-02-01 07:19:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GATE | 8507 | GATE DME010298 8507bp Derived from AJ010298 (e1315889) (Rel. 56, Last updated, Version 1). | 711..752 | 392..351 | 138 | 81 | Minus |
| copia | 5143 | copia DMCOPIA 5143bp Derived from X02599 (g7740) (Rel. 49, Last updated, Version 4). | 540..654 | 502..386 | 120 | 58.1 | Minus |
BS08428.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:40:24 Download gff for
BS08428.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tef-PA | 1175..1950 | 17..792 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:39:28 Download gff for
BS08428.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8961-PA | 1175..1950 | 17..792 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:13:18 Download gff for
BS08428.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tef-RA | 1278..2055 | 13..792 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:42:58 Download gff for
BS08428.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tef-RA | 1278..2055 | 13..792 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:42:58 Download gff for
BS08428.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17054659..17055176 | 13..532 | 99 | <- | Plus |
| 2R | 17055235..17055494 | 533..792 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:13:18 Download gff for
BS08428.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12942164..12942681 | 13..532 | 99 | <- | Plus |
| arm_2R | 12942740..12942999 | 533..792 | 100 | | Plus |
BS08428.5prime Sequence
877 bp (768 high quality bases) assembled on 2006-01-10
> BS08428.5prime
GAAGTTATCAGTCGACATGTCTAAGTTTCTGGACATGCTATCGGGGAGCC
AGTGCGTCAGCCTGGAAAAGTGCGGCGATGTGGTGGTCTCAACCAACGAC
TGTATGATTGCACTTTACTGCCACTTCTGCCGTGACCTCTTCACACAACT
GCCGGAGTTCTTAAGACACCTCCAAAGCAACCATTCGGATGTGCTGCACT
TCACCAAGGAGCACAACGTTTACAGCGTGGAGGAGCTGTTGTCCGGTGAG
CAGGGTAAAGCCCACGAGGACGCCCAGTCGGCGGGGCACAACAGCAGCAG
CGGTGACTCTAGTTCACTGATGAATTCAGAGGATTCTAGGGCCATCGAAG
GCTCAGAAGATAACTCAGACAATAGCCCAATGAAACCTGAACAAATAGGG
AAACAGAGTGAAATAAACCTGCTAGCGGAAGTGACAAACATTTTATTGCA
AACCAACGACAAGGAATTAAAACCCGAAAATGGCGTATTCAACAGACCAC
GCAAAAAGGCTAATAACGAGAGCAGTTCTTTGAAGATATGCGATCTGAAG
AGTCACACTATTGCAAGGACTTCGCGAAAGCGAATGAGCATGGTAAAGAA
CCGCATCCTGCGAGTCCTTGACAGCGATTTGTCTGCAAAGCTTGAAATTA
AACCTCCAGAGCCCAACTCCAAACTTTCTATAACTGAGCCCATCCAAGAA
GACAACATACCTGGAACATGTTTTGACACTCCTACAAAGCCCATACCGAG
CTCATCTCAATTAAGTGTAAGAAAGTCTTCTTTAACAGAGGCAAACCAAA
TATGTACCAAATATGCCGAGAAGAAAACGGCGCCTACCATGCCTAAGCTA
CTGAACTGTGTACCAAAGCCCATATTA
BS08428.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:06:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8961-PA | 1950 | tef-RA | 1..861 | 17..877 | 4305 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 01:19:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tef-RA | 2168 | CG8961-RA | 104..964 | 17..877 | 4305 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 01:19:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17055808..17056298 | 877..387 | 2455 | 100 | Minus |
| 2R | 25286936 | 2R | 17056363..17056732 | 386..17 | 1850 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 01:19:37 has no hits.
BS08428.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:40:25 Download gff for
BS08428.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tef-PA | 1..860 | 17..876 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:39:29 Download gff for
BS08428.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8961-PA | 1..860 | 17..876 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:39:50 Download gff for
BS08428.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tef-RA | 104..963 | 17..876 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:28:38 Download gff for
BS08428.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tef-RA | 104..963 | 17..876 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:28:38 Download gff for
BS08428.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17055809..17056298 | 387..876 | 100 | <- | Minus |
| 2R | 17056363..17056732 | 17..386 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:39:50 Download gff for
BS08428.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12943314..12943803 | 387..876 | 100 | <- | Minus |
| arm_2R | 12943868..12944237 | 17..386 | 100 | | Minus |
BS08428.complete Sequence
1982 bp assembled on 2008-08-14
GenBank Submission: FJ636152
> BS08428.complete
GAAGTTATCAGTCGACATGTCTAAGTTTCTGGACATGCTATCGGGGAGCC
AGTGCGTCAGCCTGGAAAAGTGCGGCGATGTGGTGGTCTCAACCAACGAC
TGTATGATTGCACTTTACTGCCACTTCTGCCGTGACCTCTTCACACAACT
GCCGGAGTTCTTAAGACACCTCCAAAGCAACCATTCGGATGTGCTGCACT
TCACCAAGGAGCACAACGTTTACAGCGTGGAGGAGCTGTTGTCCGGTGAG
CAGGGTAAAGCCCACGAGGACGCCCAGTCGGCGGGGCACAACAGCAGCAG
CGGTGACTCTAGTTCACTGATGAATTCAGAGGATTCTAGGGCCATCGAAG
GCTCAGAAGATAACTCAGACAATAGCCCAATGAAACCTGAACAAATAGGG
AAACAGAGTGAAATAAACCTGCTAGCGGAAGTGACAAACATTTTATTGCA
AACCAACGACAAGGAATTAAAACCCGAAAATGGCGTATTCAACAGACCAC
GCAAAAAGGCTAATAACGAGAGCAGTTCTTTGAAGATATGCGATCTGAAG
AGTCACACTATTGCAAGGACTTCGCGAAAGCGAATGAGCATGGTAAAGAA
CCGCATCCTGCGAGTCCTTGACAGCGATTTGTCTGCAAAGCTTGAAATTA
AACCTCCAGAGCCCAACTCCAAACTTTCTATAACTGAGCCCATCCAAGAA
GACAACATACCTGGAACATGTTTTGACACTCCTACAAAGCCCATACCGAG
CTCATCTCAATTAAGTGTAAGAAAGTCTTCTTTAACAGAGGCAAACCAAA
TATGTACCAAATATGCCGAGAAGAAAACGGCGCCTACCATGCCTAAGCTA
CTGAACTGTGTACCAAAGCCCATATTAACTAGTCAACAAGCTCATACTAA
TGCCGAGATAAGTGAGATAAATGAAACCTATCACCTAGCAGCTAGTCAAG
TGACAAAAACCACGAAAACATTTCCCGTAAAAATAACACAAATAGATATT
TTACAACCAGTTAAGTTACCTAAAACTTTAATAACACCAATCAATGAAGA
GGGTGTCAGTGACCAAGTGGAGAATAGCACGAATAATATAAACAATGCCC
AAAGTCTGCCGAAAGAAAACACAAAAAAGTTTTTTAAAAAGCGTAGCGAA
TTAGGGATAAAAGCTCAAGGCAGTCCCAACAAATTTTTTAAAATAATAAA
GTCCAAGGCAAACCCCATTATTGTAAAACGGGTGCAGACCACCAGTGCCA
AAGCTAGTACAAACAAAATCCAAATACGATCTAATGACAAAACTAATTGT
TTTGCTTCTGAGTTTAACAGCACAAAGATCCGCAAGTTAAAGATGGAAAA
TTGCGTCGACCTAAAATCGGAAGATCCCTGCGCCAATACAAATACGCGTT
TAAACAAATTGGCAACAATAAGCAGTTGCGAAATATTAAAAGCGGTTGGA
TTGCCGGCAATCACAGATAACCCGATCGAGGATACATTATTGCCAGACGA
GTTAGAAACGATCCGAAAAAAGGCAGATCAATTCATCAAAATCTACAGGA
AGTACGATTCTATTTGGAATTATAGAAAAATTTGTCCGCCAGCGAAACCG
GACTTTATTTCTCAACAGATATTTGCTTTAACCAGAGAAGTTAACAAGAC
AATGTTATGCAACCTGGCGAACAGCGATATAAAAGGCATTATTAATCAGA
TTTCAGTTTGGCATTACAATATATATACCCAATATATTGACTTGGATACC
ATTTCGGAAAATGCCCGATATACTTTAAAGCTATTCTCGTTTTTACCTGT
TAGTTTTGCTTACTTTTGCAAATGTTGCGACGATATTTTCATCTTAAAGA
AAGAGTACTTAAAGCATTTGATTTCTCACCAAGTTCGGTTTCAGTGCACA
AAATGCATTAAAGTATTCAAGTACAAGGGATACTATGAAAAGCATTTGCG
AAACGCTCATTCTTAAAAGCTTTCTAGACCAT
BS08428.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:47:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tef-RA | 1950 | CG8961-PA | 1..1950 | 17..1966 | 9750 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:47:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tef-RA | 2168 | CG8961-RA | 104..2053 | 17..1966 | 9750 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:47:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17055235..17056298 | 1450..387 | 5320 | 100 | Minus |
| 2R | 25286936 | 2R | 17054661..17055176 | 1966..1451 | 2580 | 100 | Minus |
| 2R | 25286936 | 2R | 17056363..17056732 | 386..17 | 1850 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 00:47:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GATE | 8507 | GATE DME010298 8507bp Derived from AJ010298 (e1315889) (Rel. 56, Last updated, Version 1). | 711..752 | 1591..1632 | 138 | 81 | Plus |
BS08428.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:43:22 Download gff for
BS08428.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tef-RA | 93..2044 | 17..1970 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:31:31 Download gff for
BS08428.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tef-RA | 104..2051 | 17..1964 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:10:16 Download gff for
BS08428.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tef-RA | 93..2040 | 17..1964 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:37:55 Download gff for
BS08428.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tef-RA | 104..2051 | 17..1964 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:37:55 Download gff for
BS08428.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17054663..17055176 | 1451..1964 | 100 | <- | Minus |
| 2R | 17055235..17056298 | 387..1450 | 100 | <- | Minus |
| 2R | 17056363..17056732 | 17..386 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:31:31 Download gff for
BS08428.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12942168..12942681 | 1451..1964 | 100 | <- | Minus |
| arm_2R | 12942740..12943803 | 387..1450 | 100 | <- | Minus |
| arm_2R | 12943868..12944237 | 17..386 | 100 | | Minus |
BS08428.pep Sequence
Translation from 16 to 1965
> BS08428.pep
MSKFLDMLSGSQCVSLEKCGDVVVSTNDCMIALYCHFCRDLFTQLPEFLR
HLQSNHSDVLHFTKEHNVYSVEELLSGEQGKAHEDAQSAGHNSSSGDSSS
LMNSEDSRAIEGSEDNSDNSPMKPEQIGKQSEINLLAEVTNILLQTNDKE
LKPENGVFNRPRKKANNESSSLKICDLKSHTIARTSRKRMSMVKNRILRV
LDSDLSAKLEIKPPEPNSKLSITEPIQEDNIPGTCFDTPTKPIPSSSQLS
VRKSSLTEANQICTKYAEKKTAPTMPKLLNCVPKPILTSQQAHTNAEISE
INETYHLAASQVTKTTKTFPVKITQIDILQPVKLPKTLITPINEEGVSDQ
VENSTNNINNAQSLPKENTKKFFKKRSELGIKAQGSPNKFFKIIKSKANP
IIVKRVQTTSAKASTNKIQIRSNDKTNCFASEFNSTKIRKLKMENCVDLK
SEDPCANTNTRLNKLATISSCEILKAVGLPAITDNPIEDTLLPDELETIR
KKADQFIKIYRKYDSIWNYRKICPPAKPDFISQQIFALTREVNKTMLCNL
ANSDIKGIINQISVWHYNIYTQYIDLDTISENARYTLKLFSFLPVSFAYF
CKCCDDIFILKKEYLKHLISHQVRFQCTKCIKVFKYKGYYEKHLRNAHS*
BS08428.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:18:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tef-PA | 649 | CG8961-PA | 1..649 | 1..649 | 3365 | 100 | Plus |
