Clone BS08432 Report

Search the DGRC for BS08432

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:84
Well:32
Vector:pDNR-Dual
Associated Gene/Transcriptelav-RA
Protein status:BS08432.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08432.3prime Sequence

900 bp (772 high quality bases) assembled on 2006-01-10

> BS08432.3prime
ATGGTCTAGAAAGCTTCTACTTGGCTTTGTTGGTCTTGAAGCTGACCTGC
AGCACCCGATTGCCCATGGTGTAGCCGTTGAGCGCCCGAATGGCCATGGC
CGCCTCATCGTAGTTGGTCATCGAAACGAAGCCGTAGCCCTTGCACTGAT
TCGTTGTGGGATCCTTGACAATCTTTACCGATTGCACAGCTCCAAATGGA
CCAAACAGCTGCCACAGGGCAGCCTCCTCCGTTTCCGGCGCCAAGTTGTA
GATGAAAATGGGATACGCGCCGCCAGGCCCACTGGCCAGCGTTGTGGCCG
CCGCCGCCGCCGCTCCTAGTCCATTGGGCAGCATTACGTCCAGCATGTCG
CCCGCCATTGGTGAAAACCGGGCCAGACCCTTGTTAACTGGCGTGTGCAT
GGCGCCCCCGATGCGTCGCACCAGTTGGGGATTGAGGAAAGCGGGCAGCT
GCGGCTGGATGATCTTACTGGTGCTGCCGGGCGTATTGGAGAATTTTACC
ACTATGGGGTCTGTGCAGCTGGATGGTGTAGTACCGTTCAAGGCAATGAT
AGCCCTTGTGGCCTCCTCCCGCTTATCGAATCGAATAAAGCCTACTCCTT
TCGTCTGCGTATCGTTGCCAGCGTTCTGCAGAATGCGCGATGTGATTATT
GCTCCGAATGGTGCGAAGATGGCCTCCAGTTCCTGCTGGGTCATCGTCTT
TGGCAGCCCCGACACATAAAGGTTGGCGCCTTTAATGGCATCGGACGACG
GGCGGGCAAACGACACCTTTATGGTTTTGTTCTGCAGTCGCAGGCCGTTT
AGAACATTAACAGCCTGCTCGGCATCTTGCGGCCGGACATAGTTAACAAA
GCCGTAGCCCAAACTTTGGCCCTTGCTGGGCGCCTGCGGATTGAGAGGAT

BS08432.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:06:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG4262-PA 1452 elav-RA 569..1452 900..17 4395 99.8 Minus
CG4262-PB 1440 elav-RB 557..1440 900..17 4395 99.8 Minus
CG4396-PA 1071 fne-RA 1016..1055 66..27 150 95 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:05:02
Subject Length Description Subject Range Query Range Score Percent Strand
elav-RC 2248 CG4262-RC 809..1693 900..16 4410 99.9 Minus
elav-RB 2602 CG4262-RB 777..1661 900..16 4410 99.9 Minus
elav-RA 2505 CG4262-RA 1066..1950 900..16 4410 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:04:58
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 517791..518675 16..900 4410 99.9 Plus
X 23542271 X 12945241..12945474 260..27 375 77.4 Minus
2L 23513712 2L 2963250..2963370 147..27 275 81.8 Minus
Blast to na_te.dros performed on 2015-02-12 18:05:00 has no hits.

BS08432.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:40:28 Download gff for BS08432.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4262-PA 569..1452 17..900 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:39:33 Download gff for BS08432.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4262-PB 557..1440 17..900 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:11:04 Download gff for BS08432.3prime
Subject Subject Range Query Range Percent Splice Strand
elav-RA 1066..1952 13..900 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:56:06 Download gff for BS08432.3prime
Subject Subject Range Query Range Percent Splice Strand
elav-RA 1066..1952 13..900 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:56:06 Download gff for BS08432.3prime
Subject Subject Range Query Range Percent Splice Strand
X 517789..518675 13..900 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:11:04 Download gff for BS08432.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 411822..412708 13..900 99   Plus

BS08432.5prime Sequence

866 bp (786 high quality bases) assembled on 2006-01-10

> BS08432.5prime
GAAGTTATCAGTCGACATGGACTTTATTATGGCAAATACCGGAGCTGGCG
GCGGAGTAGACACACAGGCACAGCTAATGCAGAGTGCCGCTGCAGCCGCA
GCAGTGGCGGCAACAAACGCGGCCGCCGCTCCCGTACAGAATGCAGCCGC
CGTGGCGGCCGCCGCCCAGCTGCAGCAGCAACAGGTGCAACAGGCAATCC
TGCAGGTGCAGCAGCAGCAGACACAGCAAGCGGTGGCCGCGGCCGCTGCC
GCAGTGACCCAGCAGCTCCAACAGCAACAGCAGGCTGTCGTGGCCCAACA
GGCTGTAGTGCAGCAGCAACAACAGCAGGCGGCGGCAGTGGTGCAACAGG
CGGCGGTCCAACAGGCTGTGGTGCCCCAGCCGCAGCAGGCGCAGCCCAAT
ACGAATGGCAATGCAGGATCGGGATCGCAAAATGGCAGCAACGGCAGCAC
GGAGACGCGCACAAACCTTATTGTCAACTACTTGCCGCAAACAATGACCG
AAGACGAGATCCGTTCGCTCTTCTCCAGCGTCGGCGAGATTGAGTCGGTG
AAGCTGATACGCGACAAGTCGCAGGTCTACATCGATCCTCTCAATCCGCA
GGCGCCCAGCAAGGGCCAAAGTCTGGGCTACGGCTTTGTTAACTATGTCC
GGCCGCAAGATGCCGAGCAGGCTGTTAATGTTCTAAACGGCCTGCGACTG
CAGAACAAAACCATAAAGGTGTCGTTTGCCCGCCCGTCGTCCGATGCCAT
TAAAGGCGCCAACCTTTATGTGTCGGGGCTGCCAAAGACGATGACCCAGC
AGGAACTGGAGGCCATCTTCGCACCATTCGGAGCAATAATCACATCGCGC
ATTCTGCAGAACGCTG

BS08432.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:06:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG4262-PA 1452 elav-RA 1..850 17..866 4250 100 Plus
CG4262-PB 1440 elav-RB 1..838 29..866 4190 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:59:48
Subject Length Description Subject Range Query Range Score Percent Strand
elav-RA 2505 CG4262-RA 498..1347 17..866 4250 100 Plus
elav-RD 10506 CG4262-RD 498..1347 17..866 4250 100 Plus
elav-RC 2248 CG4262-RC 242..1090 18..866 4245 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:59:41
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 518394..519242 866..18 4245 100 Minus
X 23542271 X 12942724..12942810 452..538 195 81.6 Plus
Blast to na_te.dros performed 2015-02-12 18:59:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6733..6929 136..332 264 62.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6737..6900 167..327 264 64.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2310..2539 167..393 252 59.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6721..6889 199..364 216 63.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6722..6912 249..449 188 64.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2381..2654 64..328 169 58.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2724..2884 177..348 158 60.9 Plus
roo 9092 roo DM_ROO 9092bp 1060..1141 259..338 151 72.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6721..6939 227..449 150 56.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2275..2374 224..327 139 65.7 Plus
roo 9092 roo DM_ROO 9092bp 1046..1154 222..326 138 62.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2306..2473 211..387 134 57.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1516..1586 267..338 123 65.3 Plus

BS08432.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:40:29 Download gff for BS08432.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4262-PA 1..850 17..866 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:39:34 Download gff for BS08432.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4262-PA 1..850 17..866 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:27:31 Download gff for BS08432.5prime
Subject Subject Range Query Range Percent Splice Strand
elav-RD 498..1347 17..866 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:28:19 Download gff for BS08432.5prime
Subject Subject Range Query Range Percent Splice Strand
elav-RD 498..1347 17..866 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:28:19 Download gff for BS08432.5prime
Subject Subject Range Query Range Percent Splice Strand
X 518394..519252 6..866 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:27:31 Download gff for BS08432.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 412427..413285 6..866 99   Minus

BS08432.complete Sequence

1484 bp (1484 high quality bases) assembled on 2006-01-18

GenBank Submission: FJ636154

> BS08432.complete
GAAGTTATCAGTCGACATGGACTTTATTATGGCAAATACCGGAGCTGGCG
GCGGAGTAGACACACAGGCACAGCTAATGCAGAGTGCCGCTGCAGCCGCA
GCAGTGGCGGCAACAAACGCGGCCGCCGCTCCCGTACAGAATGCAGCCGC
CGTGGCGGCCGCCGCCCAGCTGCAGCAGCAACAGGTGCAACAGGCAATCC
TGCAGGTGCAGCAGCAGCAGACACAGCAAGCGGTGGCCGCGGCCGCTGCC
GCAGTGACCCAGCAGCTCCAACAGCAACAGCAGGCTGTCGTGGCCCAACA
GGCTGTAGTGCAGCAGCAACAACAGCAGGCGGCGGCAGTGGTGCAACAGG
CGGCGGTCCAACAGGCTGTGGTGCCCCAGCCGCAGCAGGCGCAGCCCAAT
ACGAATGGCAATGCAGGATCGGGATCGCAAAATGGCAGCAACGGCAGCAC
GGAGACGCGCACAAACCTTATTGTCAACTACTTGCCGCAAACAATGACCG
AAGACGAGATCCGTTCGCTCTTCTCCAGCGTCGGCGAGATTGAGTCGGTG
AAGCTGATACGCGACAAGTCGCAGGTCTACATCGATCCTCTCAATCCGCA
GGCGCCCAGCAAGGGCCAAAGTCTGGGCTACGGCTTTGTTAACTATGTCC
GGCCGCAAGATGCCGAGCAGGCTGTTAATGTTCTAAACGGCCTGCGACTG
CAGAACAAAACCATAAAGGTGTCGTTTGCCCGCCCGTCGTCCGATGCCAT
TAAAGGCGCCAACCTTTATGTGTCGGGGCTGCCAAAGACGATGACCCAGC
AGGAACTGGAGGCCATCTTCGCACCATTCGGAGCAATAATCACATCGCGC
ATTCTGCAGAACGCTGGCAACGATACGCAGACGAAAGGAGTAGGCTTTAT
TCGATTCGATAAGCGGGAGGAGGCCACAAGGGCTATCATTGCCTTGAACG
GTACTACACCATCCAGCTGCACAGACCCCATAGTGGTAAAATTCTCCAAT
ACGCCCGGCAGCACCAGTAAGATCATCCAGCCGCAGCTGCCCGCTTTCCT
CAATCCCCAACTGGTGCGACGCATCGGGGGCGCCATGCACACGCCAGTTA
ACAAGGGTCTGGCCCGGTTTTCACCAATGGCGGGCGACATGCTGGACGTA
ATGCTGCCCAATGGACTAGGAGCGGCGGCGGCGGCGGCCACAACGCTGGC
CAGTGGGCCTGGCGGCGCGTATCCCATTTTCATCTACAACTTGGCGCCGG
AAACGGAGGAGGCTGCCCTGTGGCAGCTGTTTGGTCCATTTGGAGCTGTG
CAATCGGTAAAGATTGTCAAGGATCCCACAACGAATCAGTGCAAGGGCTA
CGGCTTCGTTTCGATGACCAACTACGATGAGGCGGCCATGGCCATTCGGG
CGCTCAACGGCTACACCATGGGCAATCGGGTGCTGCAGGTCAGCTTCAAG
ACCAACAAAGCCAAGTAGAAGCTTTCTAGACCAT

BS08432.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:49:17
Subject Length Description Subject Range Query Range Score Percent Strand
elav-RA 1452 CG4262-PA 1..1452 17..1468 7260 100 Plus
elav-RD 1452 CG4262-PD 1..1452 17..1468 7260 100 Plus
elav-RC 1440 CG4262-PC 1..1440 29..1468 7200 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:49:19
Subject Length Description Subject Range Query Range Score Percent Strand
elav-RA 2505 CG4262-RA 498..1950 17..1469 7265 100 Plus
elav-RD 10506 CG4262-RD 498..1950 17..1469 7265 100 Plus
elav-RC 2248 CG4262-RC 242..1693 18..1469 7260 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:49:13
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 517791..519242 1469..18 7260 100 Minus
X 23542271 X 12945241..12945474 1225..1458 375 77.4 Plus
2L 23513712 2L 2963250..2963370 1338..1458 275 81.8 Plus
X 23542271 X 12942724..12942810 452..538 195 81.6 Plus
Blast to na_te.dros performed 2014-11-26 15:49:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6733..6929 136..332 264 62.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6737..6900 167..327 264 64.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2310..2539 167..393 252 59.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6721..6889 199..364 216 63.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6722..6912 249..449 188 64.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2381..2654 64..328 169 58.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2724..2884 177..348 158 60.9 Plus
roo 9092 roo DM_ROO 9092bp 1060..1141 259..338 151 72.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6721..6939 227..449 150 56.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2275..2374 224..327 139 65.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2306..2473 211..387 134 57.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1516..1586 267..338 123 65.3 Plus

BS08432.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:03:17 Download gff for BS08432.complete
Subject Subject Range Query Range Percent Splice Strand
elav-RA 1..1452 17..1468 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:41:15 Download gff for BS08432.complete
Subject Subject Range Query Range Percent Splice Strand
elav-RA 498..1952 17..1472 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:58:10 Download gff for BS08432.complete
Subject Subject Range Query Range Percent Splice Strand
elav-RD 498..1949 17..1468 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:03:17 Download gff for BS08432.complete
Subject Subject Range Query Range Percent Splice Strand
elav-RA 498..1952 17..1472 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:20:58 Download gff for BS08432.complete
Subject Subject Range Query Range Percent Splice Strand
elav-RD 498..1949 17..1468 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:20:58 Download gff for BS08432.complete
Subject Subject Range Query Range Percent Splice Strand
X 517792..519242 17..1468 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:58:10 Download gff for BS08432.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 411825..413275 17..1468 99   Minus

BS08432.pep Sequence

Translation from 16 to 1467

> BS08432.pep
MDFIMANTGAGGGVDTQAQLMQSAAAAAAVAATNAAAAPVQNAAAVAAAA
QLQQQQVQQAILQVQQQQTQQAVAAAAAAVTQQLQQQQQAVVAQQAVVQQ
QQQQAAAVVQQAAVQQAVVPQPQQAQPNTNGNAGSGSQNGSNGSTETRTN
LIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKG
QSLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFARPSSDAIKGANL
YVSGLPKTMTQQELEAIFAPFGAIITSRILQNAGNDTQTKGVGFIRFDKR
EEATRAIIALNGTTPSSCTDPIVVKFSNTPGSTSKIIQPQLPAFLNPQLV
RRIGGAMHTPVNKGLARFSPMAGDMLDVMLPNGLGAAAAAATTLASGPGG
AYPIFIYNLAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYGFVSM
TNYDEAAMAIRALNGYTMGNRVLQVSFKTNKAK*

BS08432.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:21:03
Subject Length Description Subject Range Query Range Score Percent Strand
elav-PA 483 CG4262-PA 1..483 1..483 2404 100 Plus
elav-PD 483 CG4262-PD 1..483 1..483 2404 100 Plus
elav-PC 479 CG4262-PC 1..479 5..483 2383 100 Plus
elav-PB 479 CG4262-PB 1..479 5..483 2383 100 Plus
fne-PJ 353 CG4396-PJ 10..351 130..483 1017 60.8 Plus