Clone Sequence Records
BS08432.3prime Sequence
900 bp (772 high quality bases) assembled on 2006-01-10
> BS08432.3prime
ATGGTCTAGAAAGCTTCTACTTGGCTTTGTTGGTCTTGAAGCTGACCTGC
AGCACCCGATTGCCCATGGTGTAGCCGTTGAGCGCCCGAATGGCCATGGC
CGCCTCATCGTAGTTGGTCATCGAAACGAAGCCGTAGCCCTTGCACTGAT
TCGTTGTGGGATCCTTGACAATCTTTACCGATTGCACAGCTCCAAATGGA
CCAAACAGCTGCCACAGGGCAGCCTCCTCCGTTTCCGGCGCCAAGTTGTA
GATGAAAATGGGATACGCGCCGCCAGGCCCACTGGCCAGCGTTGTGGCCG
CCGCCGCCGCCGCTCCTAGTCCATTGGGCAGCATTACGTCCAGCATGTCG
CCCGCCATTGGTGAAAACCGGGCCAGACCCTTGTTAACTGGCGTGTGCAT
GGCGCCCCCGATGCGTCGCACCAGTTGGGGATTGAGGAAAGCGGGCAGCT
GCGGCTGGATGATCTTACTGGTGCTGCCGGGCGTATTGGAGAATTTTACC
ACTATGGGGTCTGTGCAGCTGGATGGTGTAGTACCGTTCAAGGCAATGAT
AGCCCTTGTGGCCTCCTCCCGCTTATCGAATCGAATAAAGCCTACTCCTT
TCGTCTGCGTATCGTTGCCAGCGTTCTGCAGAATGCGCGATGTGATTATT
GCTCCGAATGGTGCGAAGATGGCCTCCAGTTCCTGCTGGGTCATCGTCTT
TGGCAGCCCCGACACATAAAGGTTGGCGCCTTTAATGGCATCGGACGACG
GGCGGGCAAACGACACCTTTATGGTTTTGTTCTGCAGTCGCAGGCCGTTT
AGAACATTAACAGCCTGCTCGGCATCTTGCGGCCGGACATAGTTAACAAA
GCCGTAGCCCAAACTTTGGCCCTTGCTGGGCGCCTGCGGATTGAGAGGAT
BS08432.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:06:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4262-PA | 1452 | elav-RA | 569..1452 | 900..17 | 4395 | 99.8 | Minus |
CG4262-PB | 1440 | elav-RB | 557..1440 | 900..17 | 4395 | 99.8 | Minus |
CG4396-PA | 1071 | fne-RA | 1016..1055 | 66..27 | 150 | 95 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:05:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
elav-RC | 2248 | CG4262-RC | 809..1693 | 900..16 | 4410 | 99.9 | Minus |
elav-RB | 2602 | CG4262-RB | 777..1661 | 900..16 | 4410 | 99.9 | Minus |
elav-RA | 2505 | CG4262-RA | 1066..1950 | 900..16 | 4410 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:04:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 517791..518675 | 16..900 | 4410 | 99.9 | Plus |
X | 23542271 | X | 12945241..12945474 | 260..27 | 375 | 77.4 | Minus |
2L | 23513712 | 2L | 2963250..2963370 | 147..27 | 275 | 81.8 | Minus |
Blast to na_te.dros performed on 2015-02-12 18:05:00 has no hits.
BS08432.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:40:28 Download gff for
BS08432.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4262-PA | 569..1452 | 17..900 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:39:33 Download gff for
BS08432.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4262-PB | 557..1440 | 17..900 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:11:04 Download gff for
BS08432.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
elav-RA | 1066..1952 | 13..900 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:56:06 Download gff for
BS08432.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
elav-RA | 1066..1952 | 13..900 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:56:06 Download gff for
BS08432.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 517789..518675 | 13..900 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:11:04 Download gff for
BS08432.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 411822..412708 | 13..900 | 99 | | Plus |
BS08432.5prime Sequence
866 bp (786 high quality bases) assembled on 2006-01-10
> BS08432.5prime
GAAGTTATCAGTCGACATGGACTTTATTATGGCAAATACCGGAGCTGGCG
GCGGAGTAGACACACAGGCACAGCTAATGCAGAGTGCCGCTGCAGCCGCA
GCAGTGGCGGCAACAAACGCGGCCGCCGCTCCCGTACAGAATGCAGCCGC
CGTGGCGGCCGCCGCCCAGCTGCAGCAGCAACAGGTGCAACAGGCAATCC
TGCAGGTGCAGCAGCAGCAGACACAGCAAGCGGTGGCCGCGGCCGCTGCC
GCAGTGACCCAGCAGCTCCAACAGCAACAGCAGGCTGTCGTGGCCCAACA
GGCTGTAGTGCAGCAGCAACAACAGCAGGCGGCGGCAGTGGTGCAACAGG
CGGCGGTCCAACAGGCTGTGGTGCCCCAGCCGCAGCAGGCGCAGCCCAAT
ACGAATGGCAATGCAGGATCGGGATCGCAAAATGGCAGCAACGGCAGCAC
GGAGACGCGCACAAACCTTATTGTCAACTACTTGCCGCAAACAATGACCG
AAGACGAGATCCGTTCGCTCTTCTCCAGCGTCGGCGAGATTGAGTCGGTG
AAGCTGATACGCGACAAGTCGCAGGTCTACATCGATCCTCTCAATCCGCA
GGCGCCCAGCAAGGGCCAAAGTCTGGGCTACGGCTTTGTTAACTATGTCC
GGCCGCAAGATGCCGAGCAGGCTGTTAATGTTCTAAACGGCCTGCGACTG
CAGAACAAAACCATAAAGGTGTCGTTTGCCCGCCCGTCGTCCGATGCCAT
TAAAGGCGCCAACCTTTATGTGTCGGGGCTGCCAAAGACGATGACCCAGC
AGGAACTGGAGGCCATCTTCGCACCATTCGGAGCAATAATCACATCGCGC
ATTCTGCAGAACGCTG
BS08432.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:06:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4262-PA | 1452 | elav-RA | 1..850 | 17..866 | 4250 | 100 | Plus |
CG4262-PB | 1440 | elav-RB | 1..838 | 29..866 | 4190 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:59:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
elav-RA | 2505 | CG4262-RA | 498..1347 | 17..866 | 4250 | 100 | Plus |
elav-RD | 10506 | CG4262-RD | 498..1347 | 17..866 | 4250 | 100 | Plus |
elav-RC | 2248 | CG4262-RC | 242..1090 | 18..866 | 4245 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:59:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 518394..519242 | 866..18 | 4245 | 100 | Minus |
X | 23542271 | X | 12942724..12942810 | 452..538 | 195 | 81.6 | Plus |
Blast to na_te.dros performed 2015-02-12 18:59:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6733..6929 | 136..332 | 264 | 62.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6737..6900 | 167..327 | 264 | 64.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2539 | 167..393 | 252 | 59.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6889 | 199..364 | 216 | 63.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6912 | 249..449 | 188 | 64.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2381..2654 | 64..328 | 169 | 58.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2724..2884 | 177..348 | 158 | 60.9 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1060..1141 | 259..338 | 151 | 72.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6939 | 227..449 | 150 | 56.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2275..2374 | 224..327 | 139 | 65.7 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1046..1154 | 222..326 | 138 | 62.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2473 | 211..387 | 134 | 57.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1516..1586 | 267..338 | 123 | 65.3 | Plus |
BS08432.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:40:29 Download gff for
BS08432.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4262-PA | 1..850 | 17..866 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:39:34 Download gff for
BS08432.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4262-PA | 1..850 | 17..866 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:27:31 Download gff for
BS08432.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
elav-RD | 498..1347 | 17..866 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:28:19 Download gff for
BS08432.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
elav-RD | 498..1347 | 17..866 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:28:19 Download gff for
BS08432.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 518394..519252 | 6..866 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:27:31 Download gff for
BS08432.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 412427..413285 | 6..866 | 99 | | Minus |
BS08432.complete Sequence
1484 bp (1484 high quality bases) assembled on 2006-01-18
GenBank Submission: FJ636154
> BS08432.complete
GAAGTTATCAGTCGACATGGACTTTATTATGGCAAATACCGGAGCTGGCG
GCGGAGTAGACACACAGGCACAGCTAATGCAGAGTGCCGCTGCAGCCGCA
GCAGTGGCGGCAACAAACGCGGCCGCCGCTCCCGTACAGAATGCAGCCGC
CGTGGCGGCCGCCGCCCAGCTGCAGCAGCAACAGGTGCAACAGGCAATCC
TGCAGGTGCAGCAGCAGCAGACACAGCAAGCGGTGGCCGCGGCCGCTGCC
GCAGTGACCCAGCAGCTCCAACAGCAACAGCAGGCTGTCGTGGCCCAACA
GGCTGTAGTGCAGCAGCAACAACAGCAGGCGGCGGCAGTGGTGCAACAGG
CGGCGGTCCAACAGGCTGTGGTGCCCCAGCCGCAGCAGGCGCAGCCCAAT
ACGAATGGCAATGCAGGATCGGGATCGCAAAATGGCAGCAACGGCAGCAC
GGAGACGCGCACAAACCTTATTGTCAACTACTTGCCGCAAACAATGACCG
AAGACGAGATCCGTTCGCTCTTCTCCAGCGTCGGCGAGATTGAGTCGGTG
AAGCTGATACGCGACAAGTCGCAGGTCTACATCGATCCTCTCAATCCGCA
GGCGCCCAGCAAGGGCCAAAGTCTGGGCTACGGCTTTGTTAACTATGTCC
GGCCGCAAGATGCCGAGCAGGCTGTTAATGTTCTAAACGGCCTGCGACTG
CAGAACAAAACCATAAAGGTGTCGTTTGCCCGCCCGTCGTCCGATGCCAT
TAAAGGCGCCAACCTTTATGTGTCGGGGCTGCCAAAGACGATGACCCAGC
AGGAACTGGAGGCCATCTTCGCACCATTCGGAGCAATAATCACATCGCGC
ATTCTGCAGAACGCTGGCAACGATACGCAGACGAAAGGAGTAGGCTTTAT
TCGATTCGATAAGCGGGAGGAGGCCACAAGGGCTATCATTGCCTTGAACG
GTACTACACCATCCAGCTGCACAGACCCCATAGTGGTAAAATTCTCCAAT
ACGCCCGGCAGCACCAGTAAGATCATCCAGCCGCAGCTGCCCGCTTTCCT
CAATCCCCAACTGGTGCGACGCATCGGGGGCGCCATGCACACGCCAGTTA
ACAAGGGTCTGGCCCGGTTTTCACCAATGGCGGGCGACATGCTGGACGTA
ATGCTGCCCAATGGACTAGGAGCGGCGGCGGCGGCGGCCACAACGCTGGC
CAGTGGGCCTGGCGGCGCGTATCCCATTTTCATCTACAACTTGGCGCCGG
AAACGGAGGAGGCTGCCCTGTGGCAGCTGTTTGGTCCATTTGGAGCTGTG
CAATCGGTAAAGATTGTCAAGGATCCCACAACGAATCAGTGCAAGGGCTA
CGGCTTCGTTTCGATGACCAACTACGATGAGGCGGCCATGGCCATTCGGG
CGCTCAACGGCTACACCATGGGCAATCGGGTGCTGCAGGTCAGCTTCAAG
ACCAACAAAGCCAAGTAGAAGCTTTCTAGACCAT
BS08432.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:49:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
elav-RA | 1452 | CG4262-PA | 1..1452 | 17..1468 | 7260 | 100 | Plus |
elav-RD | 1452 | CG4262-PD | 1..1452 | 17..1468 | 7260 | 100 | Plus |
elav-RC | 1440 | CG4262-PC | 1..1440 | 29..1468 | 7200 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:49:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
elav-RA | 2505 | CG4262-RA | 498..1950 | 17..1469 | 7265 | 100 | Plus |
elav-RD | 10506 | CG4262-RD | 498..1950 | 17..1469 | 7265 | 100 | Plus |
elav-RC | 2248 | CG4262-RC | 242..1693 | 18..1469 | 7260 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:49:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 517791..519242 | 1469..18 | 7260 | 100 | Minus |
X | 23542271 | X | 12945241..12945474 | 1225..1458 | 375 | 77.4 | Plus |
2L | 23513712 | 2L | 2963250..2963370 | 1338..1458 | 275 | 81.8 | Plus |
X | 23542271 | X | 12942724..12942810 | 452..538 | 195 | 81.6 | Plus |
Blast to na_te.dros performed 2014-11-26 15:49:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6733..6929 | 136..332 | 264 | 62.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6737..6900 | 167..327 | 264 | 64.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2539 | 167..393 | 252 | 59.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6889 | 199..364 | 216 | 63.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6912 | 249..449 | 188 | 64.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2381..2654 | 64..328 | 169 | 58.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2724..2884 | 177..348 | 158 | 60.9 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1060..1141 | 259..338 | 151 | 72.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6939 | 227..449 | 150 | 56.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2275..2374 | 224..327 | 139 | 65.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2473 | 211..387 | 134 | 57.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1516..1586 | 267..338 | 123 | 65.3 | Plus |
BS08432.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:03:17 Download gff for
BS08432.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
elav-RA | 1..1452 | 17..1468 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:41:15 Download gff for
BS08432.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
elav-RA | 498..1952 | 17..1472 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:58:10 Download gff for
BS08432.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
elav-RD | 498..1949 | 17..1468 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:03:17 Download gff for
BS08432.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
elav-RA | 498..1952 | 17..1472 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:20:58 Download gff for
BS08432.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
elav-RD | 498..1949 | 17..1468 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:20:58 Download gff for
BS08432.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 517792..519242 | 17..1468 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:58:10 Download gff for
BS08432.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 411825..413275 | 17..1468 | 99 | | Minus |
BS08432.pep Sequence
Translation from 16 to 1467
> BS08432.pep
MDFIMANTGAGGGVDTQAQLMQSAAAAAAVAATNAAAAPVQNAAAVAAAA
QLQQQQVQQAILQVQQQQTQQAVAAAAAAVTQQLQQQQQAVVAQQAVVQQ
QQQQAAAVVQQAAVQQAVVPQPQQAQPNTNGNAGSGSQNGSNGSTETRTN
LIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKG
QSLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFARPSSDAIKGANL
YVSGLPKTMTQQELEAIFAPFGAIITSRILQNAGNDTQTKGVGFIRFDKR
EEATRAIIALNGTTPSSCTDPIVVKFSNTPGSTSKIIQPQLPAFLNPQLV
RRIGGAMHTPVNKGLARFSPMAGDMLDVMLPNGLGAAAAAATTLASGPGG
AYPIFIYNLAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYGFVSM
TNYDEAAMAIRALNGYTMGNRVLQVSFKTNKAK*
BS08432.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:21:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
elav-PA | 483 | CG4262-PA | 1..483 | 1..483 | 2404 | 100 | Plus |
elav-PD | 483 | CG4262-PD | 1..483 | 1..483 | 2404 | 100 | Plus |
elav-PC | 479 | CG4262-PC | 1..479 | 5..483 | 2383 | 100 | Plus |
elav-PB | 479 | CG4262-PB | 1..479 | 5..483 | 2383 | 100 | Plus |
fne-PJ | 353 | CG4396-PJ | 10..351 | 130..483 | 1017 | 60.8 | Plus |