Clone BS08434 Report

Search the DGRC for BS08434

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:84
Well:34
Vector:pDNR-Dual
Associated Gene/TranscriptCG31301-RA
Protein status:BS08434.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08434.3prime Sequence

883 bp (820 high quality bases) assembled on 2006-01-10

> BS08434.3prime
ATGGTCTAGAAAGCTTCTATTCACATACATCGTTCATCTCCAGGTCGGCC
ACATGACCAGGAAACAGGTGCGCCTTCTGCATGGGTACGTGCACAAAGTA
ACGATCACAAAACTTGGGGTTCCGCCGAAGCAGGACCTCAGTCAGTATTG
TGCCATAGTCGATCTTCTTGGTAATCAAAAGGCGCCGGCTCTCTCCACTC
CCATAGCTAGCGGAACGCAAGCCAAATTGTCTGGCGATTTGGTGAAGCGT
GGTTCTTTCTTCCTTCGAAAACGTGGGCTCAAACTGCATGTCACGTATAT
CGTCCGATCTCACATAGTTTTCTATAAGCCGTCGGTAATCAGCGAAATTT
CCCTTTGGATTTATTAATCCAAGACCATTACGATTGTTCTTTAGCAGATA
ACATACGGGCTCTTCACGTCCCTGCTTCAGTCGCCCTAAGCCACCGCCTG
TCCAGCCCATCAGTCGCATCATGCGATATCCCTTGTTGCTGGGGTCCAAT
TTGGGATCGCACGGACTGTCGGCGGACTCATTGGTGACTTTGATGTTGAC
GCCGTCCTTGTTTTTTTCCACCTTGATGGTGTCGCGCGTGGCATTCAGCT
TAATACTATAGCAATAGGACTGGATCGTCAAATGCGCCTGCTTATAGGCA
GCTTTCTTGGCCGCCTTAAGGCTCTCCCCCTGTCCTGTCGCTATTACCTC
ATCATTTACTAATAATTCGGCGTATTTTGTATTATCGCTTAATGGCTGAT
CTCGGCTGACACGCTCTTCGTACTTGACATTCGCAATGTTGCAGGAGTTT
TGCANGCAGGCTCGTCCCCCAGCCAAGTACACAATGAGCCGACCGAAACG
CAGATCTTGATAGAGATCGACTGGATCTCCGCC

BS08434.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:06:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG31301-PA 1320 CG31301-RA 454..1320 883..17 4316 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:44:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG31301-RA 1520 CG31301-RA 554..1420 883..17 4324 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:44:16
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15346868..15347152 883..599 1414 99.6 Minus
3R 32079331 3R 15347690..15347912 239..17 1115 100 Minus
3R 32079331 3R 15347207..15347405 600..402 995 100 Minus
3R 32079331 3R 15347463..15347625 402..240 815 100 Minus
Blast to na_te.dros performed on 2015-02-12 11:44:20 has no hits.

BS08434.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:40:33 Download gff for BS08434.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31301-PA 454..1320 17..883 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:39:39 Download gff for BS08434.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31301-PA 454..1320 17..883 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:33:07 Download gff for BS08434.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31301-RA 554..1422 13..883 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:54:20 Download gff for BS08434.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31301-RA 554..1422 13..883 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:54:20 Download gff for BS08434.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 15346868..15347152 599..883 99 -> Minus
3R 15347209..15347405 402..598 100 -> Minus
3R 15347464..15347625 240..401 100 -> Minus
3R 15347690..15347914 13..239 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:33:07 Download gff for BS08434.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11172590..11172874 599..883 99 -> Minus
arm_3R 11172931..11173127 402..598 100 -> Minus
arm_3R 11173186..11173347 240..401 100 -> Minus
arm_3R 11173412..11173636 13..239 99   Minus

BS08434.5prime Sequence

934 bp (792 high quality bases) assembled on 2006-01-10

> BS08434.5prime
GAAGTTATCAGTCGACATGTCCGTTCAACAATCCAAGCCAAAGCAGAAGA
AAGTCAAAGTTAAAAAACAGGATGATGCCGGCTATGGATCCGGGGAATTT
TCCTTGGACTGGGATGTAGACAGCTACAAGACGGAATACGAAAGTGATGA
GCACTGGGATCTGCGACGCAGCTTCATGCTGGCCCACAAGGATCGTTTTG
AGGAGGACCGGCTGGTGTGCCTGGCCCAAACGTTCGTCAACATGGAGTTC
ATGGGCTGCAAGTATCCAAGCGCGACGATGCTTTTGGTGGCCGAGTTGTC
CAAGGAAATCGCAGCGGATTTCCGTCAGAAACGGGAACAGCGCCTGAAGA
GAACATTTGTCTCGGCGTCGGATGCGGCGGAGCAGCGCGCCAAAGGGCGC
CGGGCTCCACCCCTTCCCTCGACGAGCTCCCCAGAGGATAGCTCACACAT
AAAACGCCAGTGTTTTGGCGGCGGAGATCCAGTCGATCTCTATCAAGATC
TGCGTTTCGGTCGGCTCATTGTGTACTTGGCTGGGGGACGAGCCTGCCTG
CAAAACTCCTGCAACATTGCGAATGTCAAGTACGAAGAGCGTGTCAGCCG
AGATCAGCCATTAAGCGATAATACAAAATACGCCGAATTATTAGTAAATG
ATGAGGTAATAGCGACAGGACAGGGGGAGAGCCTTAAGGCGGCCAAGAAA
GCTGCCTATAAGCAGGCGCATTTGACGATCCAGTCCTATTGCTATAGTAT
TAAGCTGAATGCCACGCGCGACACCATCAAGGTGGAAAAAAACAAGGACG
GCGTCAACATCAAAGTCACCAATGAGTCCGCCGACAGTCCGTGCGATCCC
AAATTGGACCCCAGCAACAAGGGATATCGCATGATGCGACTGATGGGCTG
GACAGGCGGGGGCTTAGGGCGACTGAAGCAGGGA

BS08434.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:06:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG31301-PA 1320 CG31301-RA 1..918 17..934 4565 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:25:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG31301-RA 1520 CG31301-RA 101..1018 17..934 4575 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:24:57
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15346305..15346684 17..396 1900 100 Plus
3R 32079331 3R 15346792..15347152 394..754 1805 100 Plus
3R 32079331 3R 15347207..15347388 753..934 895 99.5 Plus
Blast to na_te.dros performed on 2015-02-11 12:24:58 has no hits.

BS08434.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:40:34 Download gff for BS08434.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31301-PA 1..917 17..933 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:39:40 Download gff for BS08434.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31301-PA 1..917 17..933 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:24:30 Download gff for BS08434.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31301-RA 95..1017 11..933 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:29:00 Download gff for BS08434.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31301-RA 95..1017 11..933 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:29:00 Download gff for BS08434.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 15346794..15347152 396..754 100 -> Plus
3R 15346299..15346683 11..395 99 -> Plus
3R 15347209..15347387 755..933 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:24:30 Download gff for BS08434.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11172021..11172405 11..395 99 -> Plus
arm_3R 11172516..11172874 396..754 100 -> Plus
arm_3R 11172931..11173109 755..933 99   Plus

BS08434.complete Sequence

1352 bp (1352 high quality bases) assembled on 2006-01-18

GenBank Submission: FJ636155

> BS08434.complete
GAAGTTATCAGTCGACATGTCCGTTCAACAATCCAAGCCAAAGCAGAAGA
AAGTCAAAGTTAAAAAACAGGATGATGCCGGCTATGGATCCGGGGAATTT
TCCTTGGACTGGGATGTAGACAGCTACAAGACGGAATACGAAAGTGATGA
GCACTGGGATCTGCGACGCAGCTTCATGCTGGCCCACAAGGATCGTTTTG
AGGAGGACCGGCTGGTGTGCCTGGCCCAAACGTTCGTCAACATGGAGTTC
ATGGGCTGCAAGTATCCAAGCGCGACGATGCTTTTGGTGGCCGAGTTGTC
CAAGGAAATCGCAGCGGATTTCCGTCAGAAACGGGAACAGCGCCTGAAGA
GAACATTTGTCTCGGCGTCGGATGCGGCGGAGCAGCGCGCCAAAGGGCGC
CGGGCTCCACCCCTTCCCTCGACGAGCTCCCCAGAGGATAGCTCACACAT
AAAACGCCAGTGTTTTGGCGGCGGAGATCCAGTCGATCTCTATCAAGATC
TGCGTTTCGGTCGGCTCATTGTGTACTTGGCTGGGGGACGAGCCTGCCTG
CAAAACTCCTGCAACATTGCGAATGTCAAGTACGAAGAGCGTGTCAGCCG
AGATCAGCCATTAAGCGATAATACAAAATACGCCGAATTATTAGTAAATG
ATGAGGTAATAGCGACAGGACAGGGGGAGAGCCTTAAGGCGGCCAAGAAA
GCTGCCTATAAGCAGGCGCATTTGACGATCCAGTCCTATTGCTATAGTAT
TAAGCTGAATGCCACGCGCGACACCATCAAGGTGGAAAAAAACAAGGACG
GCGTCAACATCAAAGTCACCAATGAGTCCGCCGACAGTCCGTGCGATCCC
AAATTGGACCCCAGCAACAAGGGATATCGCATGATGCGACTGATGGGCTG
GACAGGCGGTGGCTTAGGGCGACTGAAGCAGGGACGTGAAGAGCCCGTAT
GTTATCTGCTAAAGAACAATCGTAATGGTCTTGGATTAATAAATCCAAAG
GGAAATTTCGCTGATTACCGACGGCTTATAGAAAACTATGTGAGATCGGA
CGATATACGTGACATGCAGTTTGAGCCCACGTTTTCGAAGGAAGAAAGAA
CCACGCTTCACCAAATCGCCAGACAATTTGGCTTGCGTTCCGCTAGCTAT
GGGAGTGGAGAGAGCCGGCGCCTTTTGATTACCAAGAAGATCGACTATGG
CACAATACTGACTGAGGTCCTGCTTCGGCGGAACCCCAAGTTTTGTGATC
GTTACTTTGTGCACGTACCCATGCAGAAGGCGCACCTGTTTCCTGGTCAT
GTGGCCGACCTGGAGATGAACGATGTATGTGAATAGAAGCTTTCTAGACC
AT

BS08434.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:00:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG31301-RA 1320 CG31301-PA 1..1320 17..1336 6600 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:00:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG31301-RA 1520 CG31301-RA 101..1420 17..1336 6600 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:00:25
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15346305..15346684 17..396 1900 100 Plus
3R 32079331 3R 15346792..15347152 394..754 1805 100 Plus
3R 32079331 3R 15347690..15347912 1114..1336 1115 100 Plus
3R 32079331 3R 15347207..15347405 753..951 995 100 Plus
3R 32079331 3R 15347463..15347625 951..1113 815 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:00:26 has no hits.

BS08434.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:03:20 Download gff for BS08434.complete
Subject Subject Range Query Range Percent Splice Strand
CG31301-RA 1..1320 17..1336 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:41:18 Download gff for BS08434.complete
Subject Subject Range Query Range Percent Splice Strand
CG31301-RA 69..1396 11..1340 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:41:05 Download gff for BS08434.complete
Subject Subject Range Query Range Percent Splice Strand
CG31301-RA 101..1420 17..1336 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:03:20 Download gff for BS08434.complete
Subject Subject Range Query Range Percent Splice Strand
CG31301-RA 69..1396 11..1340 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:09:06 Download gff for BS08434.complete
Subject Subject Range Query Range Percent Splice Strand
CG31301-RA 101..1420 17..1336 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:09:06 Download gff for BS08434.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15347690..15347912 1114..1336 100   Plus
3R 15346794..15347152 396..754 100 -> Plus
3R 15347209..15347405 755..951 100 -> Plus
3R 15346305..15346683 17..395 100 -> Plus
3R 15347464..15347625 952..1113 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:41:05 Download gff for BS08434.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11172027..11172405 17..395 100 -> Plus
arm_3R 11172516..11172874 396..754 100 -> Plus
arm_3R 11172931..11173127 755..951 100 -> Plus
arm_3R 11173186..11173347 952..1113 100 -> Plus
arm_3R 11173412..11173634 1114..1336 100   Plus

BS08434.pep Sequence

Translation from 16 to 1335

> BS08434.pep
MSVQQSKPKQKKVKVKKQDDAGYGSGEFSLDWDVDSYKTEYESDEHWDLR
RSFMLAHKDRFEEDRLVCLAQTFVNMEFMGCKYPSATMLLVAELSKEIAA
DFRQKREQRLKRTFVSASDAAEQRAKGRRAPPLPSTSSPEDSSHIKRQCF
GGGDPVDLYQDLRFGRLIVYLAGGRACLQNSCNIANVKYEERVSRDQPLS
DNTKYAELLVNDEVIATGQGESLKAAKKAAYKQAHLTIQSYCYSIKLNAT
RDTIKVEKNKDGVNIKVTNESADSPCDPKLDPSNKGYRMMRLMGWTGGGL
GRLKQGREEPVCYLLKNNRNGLGLINPKGNFADYRRLIENYVRSDDIRDM
QFEPTFSKEERTTLHQIARQFGLRSASYGSGESRRLLITKKIDYGTILTE
VLLRRNPKFCDRYFVHVPMQKAHLFPGHVADLEMNDVCE*

BS08434.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:20:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG31301-PA 439 CG31301-PA 1..439 1..439 2303 100 Plus