Clone Sequence Records
BS08434.3prime Sequence
883 bp (820 high quality bases) assembled on 2006-01-10
> BS08434.3prime
ATGGTCTAGAAAGCTTCTATTCACATACATCGTTCATCTCCAGGTCGGCC
ACATGACCAGGAAACAGGTGCGCCTTCTGCATGGGTACGTGCACAAAGTA
ACGATCACAAAACTTGGGGTTCCGCCGAAGCAGGACCTCAGTCAGTATTG
TGCCATAGTCGATCTTCTTGGTAATCAAAAGGCGCCGGCTCTCTCCACTC
CCATAGCTAGCGGAACGCAAGCCAAATTGTCTGGCGATTTGGTGAAGCGT
GGTTCTTTCTTCCTTCGAAAACGTGGGCTCAAACTGCATGTCACGTATAT
CGTCCGATCTCACATAGTTTTCTATAAGCCGTCGGTAATCAGCGAAATTT
CCCTTTGGATTTATTAATCCAAGACCATTACGATTGTTCTTTAGCAGATA
ACATACGGGCTCTTCACGTCCCTGCTTCAGTCGCCCTAAGCCACCGCCTG
TCCAGCCCATCAGTCGCATCATGCGATATCCCTTGTTGCTGGGGTCCAAT
TTGGGATCGCACGGACTGTCGGCGGACTCATTGGTGACTTTGATGTTGAC
GCCGTCCTTGTTTTTTTCCACCTTGATGGTGTCGCGCGTGGCATTCAGCT
TAATACTATAGCAATAGGACTGGATCGTCAAATGCGCCTGCTTATAGGCA
GCTTTCTTGGCCGCCTTAAGGCTCTCCCCCTGTCCTGTCGCTATTACCTC
ATCATTTACTAATAATTCGGCGTATTTTGTATTATCGCTTAATGGCTGAT
CTCGGCTGACACGCTCTTCGTACTTGACATTCGCAATGTTGCAGGAGTTT
TGCANGCAGGCTCGTCCCCCAGCCAAGTACACAATGAGCCGACCGAAACG
CAGATCTTGATAGAGATCGACTGGATCTCCGCC
BS08434.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:06:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31301-PA | 1320 | CG31301-RA | 454..1320 | 883..17 | 4316 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:44:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31301-RA | 1520 | CG31301-RA | 554..1420 | 883..17 | 4324 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:44:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15346868..15347152 | 883..599 | 1414 | 99.6 | Minus |
3R | 32079331 | 3R | 15347690..15347912 | 239..17 | 1115 | 100 | Minus |
3R | 32079331 | 3R | 15347207..15347405 | 600..402 | 995 | 100 | Minus |
3R | 32079331 | 3R | 15347463..15347625 | 402..240 | 815 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:44:20 has no hits.
BS08434.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:40:33 Download gff for
BS08434.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31301-PA | 454..1320 | 17..883 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:39:39 Download gff for
BS08434.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31301-PA | 454..1320 | 17..883 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:33:07 Download gff for
BS08434.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31301-RA | 554..1422 | 13..883 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:54:20 Download gff for
BS08434.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31301-RA | 554..1422 | 13..883 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:54:20 Download gff for
BS08434.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15346868..15347152 | 599..883 | 99 | -> | Minus |
3R | 15347209..15347405 | 402..598 | 100 | -> | Minus |
3R | 15347464..15347625 | 240..401 | 100 | -> | Minus |
3R | 15347690..15347914 | 13..239 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:33:07 Download gff for
BS08434.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11172590..11172874 | 599..883 | 99 | -> | Minus |
arm_3R | 11172931..11173127 | 402..598 | 100 | -> | Minus |
arm_3R | 11173186..11173347 | 240..401 | 100 | -> | Minus |
arm_3R | 11173412..11173636 | 13..239 | 99 | | Minus |
BS08434.5prime Sequence
934 bp (792 high quality bases) assembled on 2006-01-10
> BS08434.5prime
GAAGTTATCAGTCGACATGTCCGTTCAACAATCCAAGCCAAAGCAGAAGA
AAGTCAAAGTTAAAAAACAGGATGATGCCGGCTATGGATCCGGGGAATTT
TCCTTGGACTGGGATGTAGACAGCTACAAGACGGAATACGAAAGTGATGA
GCACTGGGATCTGCGACGCAGCTTCATGCTGGCCCACAAGGATCGTTTTG
AGGAGGACCGGCTGGTGTGCCTGGCCCAAACGTTCGTCAACATGGAGTTC
ATGGGCTGCAAGTATCCAAGCGCGACGATGCTTTTGGTGGCCGAGTTGTC
CAAGGAAATCGCAGCGGATTTCCGTCAGAAACGGGAACAGCGCCTGAAGA
GAACATTTGTCTCGGCGTCGGATGCGGCGGAGCAGCGCGCCAAAGGGCGC
CGGGCTCCACCCCTTCCCTCGACGAGCTCCCCAGAGGATAGCTCACACAT
AAAACGCCAGTGTTTTGGCGGCGGAGATCCAGTCGATCTCTATCAAGATC
TGCGTTTCGGTCGGCTCATTGTGTACTTGGCTGGGGGACGAGCCTGCCTG
CAAAACTCCTGCAACATTGCGAATGTCAAGTACGAAGAGCGTGTCAGCCG
AGATCAGCCATTAAGCGATAATACAAAATACGCCGAATTATTAGTAAATG
ATGAGGTAATAGCGACAGGACAGGGGGAGAGCCTTAAGGCGGCCAAGAAA
GCTGCCTATAAGCAGGCGCATTTGACGATCCAGTCCTATTGCTATAGTAT
TAAGCTGAATGCCACGCGCGACACCATCAAGGTGGAAAAAAACAAGGACG
GCGTCAACATCAAAGTCACCAATGAGTCCGCCGACAGTCCGTGCGATCCC
AAATTGGACCCCAGCAACAAGGGATATCGCATGATGCGACTGATGGGCTG
GACAGGCGGGGGCTTAGGGCGACTGAAGCAGGGA
BS08434.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:06:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31301-PA | 1320 | CG31301-RA | 1..918 | 17..934 | 4565 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:25:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31301-RA | 1520 | CG31301-RA | 101..1018 | 17..934 | 4575 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:24:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15346305..15346684 | 17..396 | 1900 | 100 | Plus |
3R | 32079331 | 3R | 15346792..15347152 | 394..754 | 1805 | 100 | Plus |
3R | 32079331 | 3R | 15347207..15347388 | 753..934 | 895 | 99.5 | Plus |
Blast to na_te.dros performed on 2015-02-11 12:24:58 has no hits.
BS08434.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:40:34 Download gff for
BS08434.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31301-PA | 1..917 | 17..933 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:39:40 Download gff for
BS08434.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31301-PA | 1..917 | 17..933 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:24:30 Download gff for
BS08434.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31301-RA | 95..1017 | 11..933 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:29:00 Download gff for
BS08434.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31301-RA | 95..1017 | 11..933 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:29:00 Download gff for
BS08434.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15346794..15347152 | 396..754 | 100 | -> | Plus |
3R | 15346299..15346683 | 11..395 | 99 | -> | Plus |
3R | 15347209..15347387 | 755..933 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:24:30 Download gff for
BS08434.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11172021..11172405 | 11..395 | 99 | -> | Plus |
arm_3R | 11172516..11172874 | 396..754 | 100 | -> | Plus |
arm_3R | 11172931..11173109 | 755..933 | 99 | | Plus |
BS08434.complete Sequence
1352 bp (1352 high quality bases) assembled on 2006-01-18
GenBank Submission: FJ636155
> BS08434.complete
GAAGTTATCAGTCGACATGTCCGTTCAACAATCCAAGCCAAAGCAGAAGA
AAGTCAAAGTTAAAAAACAGGATGATGCCGGCTATGGATCCGGGGAATTT
TCCTTGGACTGGGATGTAGACAGCTACAAGACGGAATACGAAAGTGATGA
GCACTGGGATCTGCGACGCAGCTTCATGCTGGCCCACAAGGATCGTTTTG
AGGAGGACCGGCTGGTGTGCCTGGCCCAAACGTTCGTCAACATGGAGTTC
ATGGGCTGCAAGTATCCAAGCGCGACGATGCTTTTGGTGGCCGAGTTGTC
CAAGGAAATCGCAGCGGATTTCCGTCAGAAACGGGAACAGCGCCTGAAGA
GAACATTTGTCTCGGCGTCGGATGCGGCGGAGCAGCGCGCCAAAGGGCGC
CGGGCTCCACCCCTTCCCTCGACGAGCTCCCCAGAGGATAGCTCACACAT
AAAACGCCAGTGTTTTGGCGGCGGAGATCCAGTCGATCTCTATCAAGATC
TGCGTTTCGGTCGGCTCATTGTGTACTTGGCTGGGGGACGAGCCTGCCTG
CAAAACTCCTGCAACATTGCGAATGTCAAGTACGAAGAGCGTGTCAGCCG
AGATCAGCCATTAAGCGATAATACAAAATACGCCGAATTATTAGTAAATG
ATGAGGTAATAGCGACAGGACAGGGGGAGAGCCTTAAGGCGGCCAAGAAA
GCTGCCTATAAGCAGGCGCATTTGACGATCCAGTCCTATTGCTATAGTAT
TAAGCTGAATGCCACGCGCGACACCATCAAGGTGGAAAAAAACAAGGACG
GCGTCAACATCAAAGTCACCAATGAGTCCGCCGACAGTCCGTGCGATCCC
AAATTGGACCCCAGCAACAAGGGATATCGCATGATGCGACTGATGGGCTG
GACAGGCGGTGGCTTAGGGCGACTGAAGCAGGGACGTGAAGAGCCCGTAT
GTTATCTGCTAAAGAACAATCGTAATGGTCTTGGATTAATAAATCCAAAG
GGAAATTTCGCTGATTACCGACGGCTTATAGAAAACTATGTGAGATCGGA
CGATATACGTGACATGCAGTTTGAGCCCACGTTTTCGAAGGAAGAAAGAA
CCACGCTTCACCAAATCGCCAGACAATTTGGCTTGCGTTCCGCTAGCTAT
GGGAGTGGAGAGAGCCGGCGCCTTTTGATTACCAAGAAGATCGACTATGG
CACAATACTGACTGAGGTCCTGCTTCGGCGGAACCCCAAGTTTTGTGATC
GTTACTTTGTGCACGTACCCATGCAGAAGGCGCACCTGTTTCCTGGTCAT
GTGGCCGACCTGGAGATGAACGATGTATGTGAATAGAAGCTTTCTAGACC
AT
BS08434.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:00:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31301-RA | 1320 | CG31301-PA | 1..1320 | 17..1336 | 6600 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:00:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31301-RA | 1520 | CG31301-RA | 101..1420 | 17..1336 | 6600 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:00:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15346305..15346684 | 17..396 | 1900 | 100 | Plus |
3R | 32079331 | 3R | 15346792..15347152 | 394..754 | 1805 | 100 | Plus |
3R | 32079331 | 3R | 15347690..15347912 | 1114..1336 | 1115 | 100 | Plus |
3R | 32079331 | 3R | 15347207..15347405 | 753..951 | 995 | 100 | Plus |
3R | 32079331 | 3R | 15347463..15347625 | 951..1113 | 815 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:00:26 has no hits.
BS08434.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:03:20 Download gff for
BS08434.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31301-RA | 1..1320 | 17..1336 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:41:18 Download gff for
BS08434.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31301-RA | 69..1396 | 11..1340 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:41:05 Download gff for
BS08434.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31301-RA | 101..1420 | 17..1336 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:03:20 Download gff for
BS08434.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31301-RA | 69..1396 | 11..1340 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:09:06 Download gff for
BS08434.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31301-RA | 101..1420 | 17..1336 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:09:06 Download gff for
BS08434.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15347690..15347912 | 1114..1336 | 100 | | Plus |
3R | 15346794..15347152 | 396..754 | 100 | -> | Plus |
3R | 15347209..15347405 | 755..951 | 100 | -> | Plus |
3R | 15346305..15346683 | 17..395 | 100 | -> | Plus |
3R | 15347464..15347625 | 952..1113 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:41:05 Download gff for
BS08434.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11172027..11172405 | 17..395 | 100 | -> | Plus |
arm_3R | 11172516..11172874 | 396..754 | 100 | -> | Plus |
arm_3R | 11172931..11173127 | 755..951 | 100 | -> | Plus |
arm_3R | 11173186..11173347 | 952..1113 | 100 | -> | Plus |
arm_3R | 11173412..11173634 | 1114..1336 | 100 | | Plus |
BS08434.pep Sequence
Translation from 16 to 1335
> BS08434.pep
MSVQQSKPKQKKVKVKKQDDAGYGSGEFSLDWDVDSYKTEYESDEHWDLR
RSFMLAHKDRFEEDRLVCLAQTFVNMEFMGCKYPSATMLLVAELSKEIAA
DFRQKREQRLKRTFVSASDAAEQRAKGRRAPPLPSTSSPEDSSHIKRQCF
GGGDPVDLYQDLRFGRLIVYLAGGRACLQNSCNIANVKYEERVSRDQPLS
DNTKYAELLVNDEVIATGQGESLKAAKKAAYKQAHLTIQSYCYSIKLNAT
RDTIKVEKNKDGVNIKVTNESADSPCDPKLDPSNKGYRMMRLMGWTGGGL
GRLKQGREEPVCYLLKNNRNGLGLINPKGNFADYRRLIENYVRSDDIRDM
QFEPTFSKEERTTLHQIARQFGLRSASYGSGESRRLLITKKIDYGTILTE
VLLRRNPKFCDRYFVHVPMQKAHLFPGHVADLEMNDVCE*
BS08434.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:20:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31301-PA | 439 | CG31301-PA | 1..439 | 1..439 | 2303 | 100 | Plus |