Clone BS08435 Report

Search the DGRC for BS08435

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:84
Well:35
Vector:pDNR-Dual
Associated Gene/TranscriptCG3704-RA
Protein status:BS08435.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08435.3prime Sequence

924 bp (837 high quality bases) assembled on 2006-01-10

> BS08435.3prime
ATGGTCTAGAAAGCTTTTACGGCTGAGCCTGTTCCTGTTCCTGCTGCAGT
TTGTCCCGCTTGCTCTGCTGGGCAGTCAGGTGGTTCTGCACGAAGCTGTG
GAAGTTTTGTTCTTCGGCGGTGCCCTTCGCGTCCTCCTCCATCTCCTCCT
CGTCTTCGATTTCCGCCGACTCGGGCACCAGACTAGGTGCCATTAGGAAA
ATGCTGTTTCCAGTGTGCGGCGGTGGGTCCTGAAGCGACAATCCCAGGGG
AACGGCATGGCCGTCCTCTTCCACATGATCCACTGGCTTTGGACCCGTCG
CACTCTCCGCCAGTCGCTCTTGGCGCTTCTTTTCGTAAACAGGCTTGTAG
TCCGTCTCGTACTCGTCCACGCTTTCGAGAATCTTCGTCAGTAGCTGGGT
GAAGCCTACGCCTGTCTTGGCCGAGACGCCGCACGTTCTTAGATTCTCGT
AGAAGGTGTCCAGGGTGAGCGACATGGTGCGCGTGAGGTTGCTCACGAAG
CTGTGCTCCTCCTCCTGGGCCTCCTGGAAGGCCTCGAAGTCTGTCATCCA
ATCCATCACAAATCCGCAGTCCTTTAGGTCGATCTTGTTCAGCGCCACAA
GGAAGGGCAAACGGGTCTTGTACAGGATGGAGCAGGCGTACAGCATGTTG
GACATGAAGGTGGTAGGGCAAGCACTGCGCTCCACATCCATTACATAGAC
CACAATGGTGGGAAACATGGTGGCCAGTCCCTCGGTTATGATGCTCCCGG
AAGCCGACCAGTTAAACACCTCGATCTGTCCGGGCGTGTCGATCACACAC
CACTTGTGTCCGCGCTCGCCAGCGCGACGCACTAGCTCCGCAAACTGTGC
CATTTTGGTGGTGACATATTGAGCGCGGTCCAATGCCCACGTTGGGACCC
AGTTGGTACTGCTTCATCACCTCC

BS08435.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:06:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG3704-PA 1149 CG3704-RA 302..1149 864..17 4240 100 Minus
CG3704-PA 1149 CG3704-RA 240..274 924..890 175 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:15:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG3704-RA 1515 CG3704-RA 312..1222 924..16 4475 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:15:30
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 939732..940088 229..585 1785 100 Plus
X 23542271 X 940152..940494 584..924 1585 98.8 Plus
X 23542271 X 939463..939681 16..234 1095 100 Plus
Blast to na_te.dros performed 2015-02-12 04:15:31
Subject Length Description Subject Range Query Range Score Percent Strand
flea 5034 flea DMBLPP 5034bp Derived from Z27119 (g415797) (Rel. 50, Last updated, Version 6). 4451..4489 357..319 123 79.5 Minus

BS08435.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:40:35 Download gff for BS08435.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3704-PA 240..1149 17..924 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:39:42 Download gff for BS08435.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3704-PA 240..1149 17..924 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:42:10 Download gff for BS08435.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3704-RA 312..1222 16..924 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:00:22 Download gff for BS08435.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3704-RA 312..1222 16..924 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:00:22 Download gff for BS08435.3prime
Subject Subject Range Query Range Percent Splice Strand
X 939463..939676 16..229 100 <- Plus
X 939733..940086 230..583 100 <- Plus
X 940152..940494 584..924 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:42:10 Download gff for BS08435.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 833496..833709 16..229 100 <- Plus
arm_X 833766..834119 230..583 100 <- Plus
arm_X 834185..834527 584..924 98   Plus

BS08435.5prime Sequence

884 bp (796 high quality bases) assembled on 2006-01-10

> BS08435.5prime
GAAGTTATCAGTCGACATGGCAGAGGGAGTGGAGAGCATCAAGCTGGAGG
CGCTGTCGCTGAGCGAGGGAATCCGGGAGTCGCCCGTGTGCATACTGGTG
CTGGGAATGGCCGGCAGCGGGAAGACCACGTTCACACAGAAGCTCATCCA
GCACGCCCAGGAGAAGTTCAATCCGTACGTGGTCAACCTGGATCCGGCGT
GCAGGGAAGTACCGTACGCGGCGCACGTGGACATACGGGACACGGTCAAC
TACCGGGAGGTGATGAAGCAGTACCAACTGGGTCCCAACGGTGGCATTGT
GACCGCGCTCAATATGTTCACCACCAAAATGGCACAGTTTGCGGAGCTAG
TGCGTCGCGCTGGCGAGCGCGGACACAAGTGGTGTGTGATCGACACGCCC
GGACAGATCGAGGTGTTTAACTGGTCGGCTTCCGGGAGCATCATAACCGA
GGGACTGGCCACCATGTTTCCCACCATTGTGGTCTATGTAATGGATGTGG
AGCGCAGTGCTTGCCCTACCACCTTCATGTCCAACATGCTGTACGCCTGC
TCCATCCTGTACAAGACCCGTTTGCCCTTCCTTGTGGCGCTGAACAAGAT
CGACCTAAAGGACTGCGGATTTGTGATGGATTGGATGACAGACTTCGAGG
CCTTCCAGGAGGCCCAGGAGGAGGAGCACAGCTTCGTGAGCAACCTCACG
CGCACCATGTCGCTCACCCTGGACACCTTCTACGAGAATCTAAGAACGTG
CGGCGTCTCGGCCAAGACAGGCGTAGGCTTCACCCAGCTACTGACGAAGA
TTCTCGAAAGCGTGGACGAGTACGAGACGGACTACAAGCCTGTTTACGAA
AAGAAGCGCCAAGAGCGACTGGCGGAGAGTGCGA

BS08435.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:06:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG3704-PA 1149 CG3704-RA 1..868 17..884 4340 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 02:54:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG3704-RA 1515 CG3704-RA 73..940 17..884 4340 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 02:54:06
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 940152..940733 598..17 2910 100 Minus
X 23542271 X 939801..940088 884..597 1440 100 Minus
Blast to na_te.dros performed 2015-02-10 02:54:09
Subject Length Description Subject Range Query Range Score Percent Strand
flea 5034 flea DMBLPP 5034bp Derived from Z27119 (g415797) (Rel. 50, Last updated, Version 6). 4451..4489 825..863 123 79.5 Plus

BS08435.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:40:36 Download gff for BS08435.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3704-PA 1..867 17..883 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:39:43 Download gff for BS08435.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3704-PA 1..867 17..883 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:41:09 Download gff for BS08435.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3704-RA 67..939 10..883 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:11:54 Download gff for BS08435.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3704-RA 67..939 10..883 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:11:54 Download gff for BS08435.5prime
Subject Subject Range Query Range Percent Splice Strand
X 939802..940086 599..883 100 <- Minus
X 940152..940739 10..598 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:41:09 Download gff for BS08435.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 833835..834119 599..883 100 <- Minus
arm_X 834185..834772 10..598 99   Minus

BS08435.complete Sequence

1181 bp (1181 high quality bases) assembled on 2006-01-18

GenBank Submission: FJ636156

> BS08435.complete
GAAGTTATCAGTCGACATGGCAGAGGGAGTGGAGAGCATCAAGCTGGAGG
CGCTGTCGCTGAGCGAGGGAATCCGGGAGTCGCCCGTGTGCATACTGGTG
CTGGGAATGGCCGGCAGCGGGAAGACCACGTTCACACAGAAGCTCATCCA
GCACGCCCAGGAGAAGTTCAATCCGTACGTGGTCAACCTGGATCCGGCGT
GCAGGGAAGTACCGTACGCGGCGCACGTGGACATACGGGACACGGTCAAC
TACCGGGAGGTGATGAAGCAGTACCAACTGGGTCCCAACGGTGGCATTGT
GACCGCGCTCAATATGTTCACCACCAAAATGGCACAGTTTGCGGAGCTAG
TGCGTCGCGCTGGCGAGCGCGGACACAAGTGGTGTGTGATCGACACGCCC
GGACAGATCGAGGTGTTTAACTGGTCGGCTTCCGGGAGCATCATAACCGA
GGGACTGGCCACCATGTTTCCCACCATTGTGGTCTATGTAATGGATGTGG
AGCGCAGTGCTTGCCCTACCACCTTCATGTCCAACATGCTGTACGCCTGC
TCCATCCTGTACAAGACCCGTTTGCCCTTCCTTGTGGCGCTGAACAAGAT
CGACCTAAAGGACTGCGGATTTGTGATGGATTGGATGACAGACTTCGAGG
CCTTCCAGGAGGCCCAGGAGGAGGAGCACAGCTTCGTGAGCAACCTCACG
CGCACCATGTCGCTCACCCTGGACACCTTCTACGAGAATCTAAGAACGTG
CGGCGTCTCGGCCAAGACAGGCGTAGGCTTCACCCAGCTACTGACGAAGA
TTCTCGAAAGCGTGGACGAGTACGAGACGGACTACAAGCCTGTTTACGAA
AAGAAGCGCCAAGAGCGACTGGCGGAGAGTGCGACGGGTCCAAAGCCAGT
GGATCATGTGGAAGAGGACGGCCATGCCGTTCCCCTGGGATTGTCGCTTC
AGGACCCACCGCCGCACACTGGAAACAGCATTTTCCTAATGGCACCTAGT
CTGGTGCCCGAGTCGGCGGAAATCGAAGACGAGGAGGAGATGGAGGAGGA
CGCGAAGGGCACCGCCGAAGAACAAAACTTCCACAGCTTCGTGCAGAACC
ACCTGACTGCCCAGCAGAGCAAGCGGGACAAACTGCAGCAGGAACAGGAA
CAGGCTCAGCCGTAAAAGCTTTCTAGACCAT

BS08435.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:55:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG3704-RA 1149 CG3704-PA 1..1149 17..1165 5745 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:55:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG3704-RA 1515 CG3704-RA 73..1222 17..1166 5750 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:55:12
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 940152..940733 598..17 2910 100 Minus
X 23542271 X 939732..940088 953..597 1785 100 Minus
X 23542271 X 939463..939681 1166..948 1095 100 Minus
Blast to na_te.dros performed 2014-11-27 13:55:13
Subject Length Description Subject Range Query Range Score Percent Strand
flea 5034 flea DMBLPP 5034bp Derived from Z27119 (g415797) (Rel. 50, Last updated, Version 6). 4451..4489 825..863 123 79.5 Plus

BS08435.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:03:21 Download gff for BS08435.complete
Subject Subject Range Query Range Percent Splice Strand
CG3704-RA 1..1149 17..1165 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:41:21 Download gff for BS08435.complete
Subject Subject Range Query Range Percent Splice Strand
CG3704-RA 63..1218 10..1166 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:28:35 Download gff for BS08435.complete
Subject Subject Range Query Range Percent Splice Strand
CG3704-RA 73..1219 17..1163 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:03:21 Download gff for BS08435.complete
Subject Subject Range Query Range Percent Splice Strand
CG3704-RA 63..1218 10..1166 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:59:04 Download gff for BS08435.complete
Subject Subject Range Query Range Percent Splice Strand
CG3704-RA 73..1219 17..1163 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:59:04 Download gff for BS08435.complete
Subject Subject Range Query Range Percent Splice Strand
X 939466..939676 953..1163 100 <- Minus
X 939733..940086 599..952 100 <- Minus
X 940152..940733 17..598 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:28:35 Download gff for BS08435.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 833499..833709 953..1163 100 <- Minus
arm_X 833766..834119 599..952 100 <- Minus
arm_X 834185..834766 17..598 100   Minus

BS08435.pep Sequence

Translation from 16 to 1164

> BS08435.pep
MAEGVESIKLEALSLSEGIRESPVCILVLGMAGSGKTTFTQKLIQHAQEK
FNPYVVNLDPACREVPYAAHVDIRDTVNYREVMKQYQLGPNGGIVTALNM
FTTKMAQFAELVRRAGERGHKWCVIDTPGQIEVFNWSASGSIITEGLATM
FPTIVVYVMDVERSACPTTFMSNMLYACSILYKTRLPFLVALNKIDLKDC
GFVMDWMTDFEAFQEAQEEEHSFVSNLTRTMSLTLDTFYENLRTCGVSAK
TGVGFTQLLTKILESVDEYETDYKPVYEKKRQERLAESATGPKPVDHVEE
DGHAVPLGLSLQDPPPHTGNSIFLMAPSLVPESAEIEDEEEMEEDAKGTA
EEQNFHSFVQNHLTAQQSKRDKLQQEQEQAQP*

BS08435.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:20:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG3704-PA 382 CG3704-PA 1..382 1..382 1985 100 Plus
CG2656-PA 283 CG2656-PA 6..211 27..228 215 30.7 Plus
CG10222-PB 307 CG10222-PB 19..208 27..209 173 25.3 Plus
CG10222-PA 307 CG10222-PA 19..208 27..209 173 25.3 Plus