Clone Sequence Records
BS08435.3prime Sequence
924 bp (837 high quality bases) assembled on 2006-01-10
> BS08435.3prime
ATGGTCTAGAAAGCTTTTACGGCTGAGCCTGTTCCTGTTCCTGCTGCAGT
TTGTCCCGCTTGCTCTGCTGGGCAGTCAGGTGGTTCTGCACGAAGCTGTG
GAAGTTTTGTTCTTCGGCGGTGCCCTTCGCGTCCTCCTCCATCTCCTCCT
CGTCTTCGATTTCCGCCGACTCGGGCACCAGACTAGGTGCCATTAGGAAA
ATGCTGTTTCCAGTGTGCGGCGGTGGGTCCTGAAGCGACAATCCCAGGGG
AACGGCATGGCCGTCCTCTTCCACATGATCCACTGGCTTTGGACCCGTCG
CACTCTCCGCCAGTCGCTCTTGGCGCTTCTTTTCGTAAACAGGCTTGTAG
TCCGTCTCGTACTCGTCCACGCTTTCGAGAATCTTCGTCAGTAGCTGGGT
GAAGCCTACGCCTGTCTTGGCCGAGACGCCGCACGTTCTTAGATTCTCGT
AGAAGGTGTCCAGGGTGAGCGACATGGTGCGCGTGAGGTTGCTCACGAAG
CTGTGCTCCTCCTCCTGGGCCTCCTGGAAGGCCTCGAAGTCTGTCATCCA
ATCCATCACAAATCCGCAGTCCTTTAGGTCGATCTTGTTCAGCGCCACAA
GGAAGGGCAAACGGGTCTTGTACAGGATGGAGCAGGCGTACAGCATGTTG
GACATGAAGGTGGTAGGGCAAGCACTGCGCTCCACATCCATTACATAGAC
CACAATGGTGGGAAACATGGTGGCCAGTCCCTCGGTTATGATGCTCCCGG
AAGCCGACCAGTTAAACACCTCGATCTGTCCGGGCGTGTCGATCACACAC
CACTTGTGTCCGCGCTCGCCAGCGCGACGCACTAGCTCCGCAAACTGTGC
CATTTTGGTGGTGACATATTGAGCGCGGTCCAATGCCCACGTTGGGACCC
AGTTGGTACTGCTTCATCACCTCC
BS08435.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:06:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3704-PA | 1149 | CG3704-RA | 302..1149 | 864..17 | 4240 | 100 | Minus |
CG3704-PA | 1149 | CG3704-RA | 240..274 | 924..890 | 175 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:15:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3704-RA | 1515 | CG3704-RA | 312..1222 | 924..16 | 4475 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:15:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 939732..940088 | 229..585 | 1785 | 100 | Plus |
X | 23542271 | X | 940152..940494 | 584..924 | 1585 | 98.8 | Plus |
X | 23542271 | X | 939463..939681 | 16..234 | 1095 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 04:15:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
flea | 5034 | flea DMBLPP 5034bp Derived from Z27119 (g415797) (Rel. 50, Last updated, Version 6). | 4451..4489 | 357..319 | 123 | 79.5 | Minus |
BS08435.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:40:35 Download gff for
BS08435.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3704-PA | 240..1149 | 17..924 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:39:42 Download gff for
BS08435.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3704-PA | 240..1149 | 17..924 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:42:10 Download gff for
BS08435.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3704-RA | 312..1222 | 16..924 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:00:22 Download gff for
BS08435.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3704-RA | 312..1222 | 16..924 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:00:22 Download gff for
BS08435.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 939463..939676 | 16..229 | 100 | <- | Plus |
X | 939733..940086 | 230..583 | 100 | <- | Plus |
X | 940152..940494 | 584..924 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:42:10 Download gff for
BS08435.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 833496..833709 | 16..229 | 100 | <- | Plus |
arm_X | 833766..834119 | 230..583 | 100 | <- | Plus |
arm_X | 834185..834527 | 584..924 | 98 | | Plus |
BS08435.5prime Sequence
884 bp (796 high quality bases) assembled on 2006-01-10
> BS08435.5prime
GAAGTTATCAGTCGACATGGCAGAGGGAGTGGAGAGCATCAAGCTGGAGG
CGCTGTCGCTGAGCGAGGGAATCCGGGAGTCGCCCGTGTGCATACTGGTG
CTGGGAATGGCCGGCAGCGGGAAGACCACGTTCACACAGAAGCTCATCCA
GCACGCCCAGGAGAAGTTCAATCCGTACGTGGTCAACCTGGATCCGGCGT
GCAGGGAAGTACCGTACGCGGCGCACGTGGACATACGGGACACGGTCAAC
TACCGGGAGGTGATGAAGCAGTACCAACTGGGTCCCAACGGTGGCATTGT
GACCGCGCTCAATATGTTCACCACCAAAATGGCACAGTTTGCGGAGCTAG
TGCGTCGCGCTGGCGAGCGCGGACACAAGTGGTGTGTGATCGACACGCCC
GGACAGATCGAGGTGTTTAACTGGTCGGCTTCCGGGAGCATCATAACCGA
GGGACTGGCCACCATGTTTCCCACCATTGTGGTCTATGTAATGGATGTGG
AGCGCAGTGCTTGCCCTACCACCTTCATGTCCAACATGCTGTACGCCTGC
TCCATCCTGTACAAGACCCGTTTGCCCTTCCTTGTGGCGCTGAACAAGAT
CGACCTAAAGGACTGCGGATTTGTGATGGATTGGATGACAGACTTCGAGG
CCTTCCAGGAGGCCCAGGAGGAGGAGCACAGCTTCGTGAGCAACCTCACG
CGCACCATGTCGCTCACCCTGGACACCTTCTACGAGAATCTAAGAACGTG
CGGCGTCTCGGCCAAGACAGGCGTAGGCTTCACCCAGCTACTGACGAAGA
TTCTCGAAAGCGTGGACGAGTACGAGACGGACTACAAGCCTGTTTACGAA
AAGAAGCGCCAAGAGCGACTGGCGGAGAGTGCGA
BS08435.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:06:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3704-PA | 1149 | CG3704-RA | 1..868 | 17..884 | 4340 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 02:54:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3704-RA | 1515 | CG3704-RA | 73..940 | 17..884 | 4340 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 02:54:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 940152..940733 | 598..17 | 2910 | 100 | Minus |
X | 23542271 | X | 939801..940088 | 884..597 | 1440 | 100 | Minus |
Blast to na_te.dros performed 2015-02-10 02:54:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
flea | 5034 | flea DMBLPP 5034bp Derived from Z27119 (g415797) (Rel. 50, Last updated, Version 6). | 4451..4489 | 825..863 | 123 | 79.5 | Plus |
BS08435.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:40:36 Download gff for
BS08435.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3704-PA | 1..867 | 17..883 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:39:43 Download gff for
BS08435.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3704-PA | 1..867 | 17..883 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:41:09 Download gff for
BS08435.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3704-RA | 67..939 | 10..883 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:11:54 Download gff for
BS08435.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3704-RA | 67..939 | 10..883 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:11:54 Download gff for
BS08435.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 939802..940086 | 599..883 | 100 | <- | Minus |
X | 940152..940739 | 10..598 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:41:09 Download gff for
BS08435.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 833835..834119 | 599..883 | 100 | <- | Minus |
arm_X | 834185..834772 | 10..598 | 99 | | Minus |
BS08435.complete Sequence
1181 bp (1181 high quality bases) assembled on 2006-01-18
GenBank Submission: FJ636156
> BS08435.complete
GAAGTTATCAGTCGACATGGCAGAGGGAGTGGAGAGCATCAAGCTGGAGG
CGCTGTCGCTGAGCGAGGGAATCCGGGAGTCGCCCGTGTGCATACTGGTG
CTGGGAATGGCCGGCAGCGGGAAGACCACGTTCACACAGAAGCTCATCCA
GCACGCCCAGGAGAAGTTCAATCCGTACGTGGTCAACCTGGATCCGGCGT
GCAGGGAAGTACCGTACGCGGCGCACGTGGACATACGGGACACGGTCAAC
TACCGGGAGGTGATGAAGCAGTACCAACTGGGTCCCAACGGTGGCATTGT
GACCGCGCTCAATATGTTCACCACCAAAATGGCACAGTTTGCGGAGCTAG
TGCGTCGCGCTGGCGAGCGCGGACACAAGTGGTGTGTGATCGACACGCCC
GGACAGATCGAGGTGTTTAACTGGTCGGCTTCCGGGAGCATCATAACCGA
GGGACTGGCCACCATGTTTCCCACCATTGTGGTCTATGTAATGGATGTGG
AGCGCAGTGCTTGCCCTACCACCTTCATGTCCAACATGCTGTACGCCTGC
TCCATCCTGTACAAGACCCGTTTGCCCTTCCTTGTGGCGCTGAACAAGAT
CGACCTAAAGGACTGCGGATTTGTGATGGATTGGATGACAGACTTCGAGG
CCTTCCAGGAGGCCCAGGAGGAGGAGCACAGCTTCGTGAGCAACCTCACG
CGCACCATGTCGCTCACCCTGGACACCTTCTACGAGAATCTAAGAACGTG
CGGCGTCTCGGCCAAGACAGGCGTAGGCTTCACCCAGCTACTGACGAAGA
TTCTCGAAAGCGTGGACGAGTACGAGACGGACTACAAGCCTGTTTACGAA
AAGAAGCGCCAAGAGCGACTGGCGGAGAGTGCGACGGGTCCAAAGCCAGT
GGATCATGTGGAAGAGGACGGCCATGCCGTTCCCCTGGGATTGTCGCTTC
AGGACCCACCGCCGCACACTGGAAACAGCATTTTCCTAATGGCACCTAGT
CTGGTGCCCGAGTCGGCGGAAATCGAAGACGAGGAGGAGATGGAGGAGGA
CGCGAAGGGCACCGCCGAAGAACAAAACTTCCACAGCTTCGTGCAGAACC
ACCTGACTGCCCAGCAGAGCAAGCGGGACAAACTGCAGCAGGAACAGGAA
CAGGCTCAGCCGTAAAAGCTTTCTAGACCAT
BS08435.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:55:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3704-RA | 1149 | CG3704-PA | 1..1149 | 17..1165 | 5745 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:55:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3704-RA | 1515 | CG3704-RA | 73..1222 | 17..1166 | 5750 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:55:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 940152..940733 | 598..17 | 2910 | 100 | Minus |
X | 23542271 | X | 939732..940088 | 953..597 | 1785 | 100 | Minus |
X | 23542271 | X | 939463..939681 | 1166..948 | 1095 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 13:55:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
flea | 5034 | flea DMBLPP 5034bp Derived from Z27119 (g415797) (Rel. 50, Last updated, Version 6). | 4451..4489 | 825..863 | 123 | 79.5 | Plus |
BS08435.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:03:21 Download gff for
BS08435.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3704-RA | 1..1149 | 17..1165 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:41:21 Download gff for
BS08435.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3704-RA | 63..1218 | 10..1166 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:28:35 Download gff for
BS08435.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3704-RA | 73..1219 | 17..1163 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:03:21 Download gff for
BS08435.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3704-RA | 63..1218 | 10..1166 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:59:04 Download gff for
BS08435.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3704-RA | 73..1219 | 17..1163 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:59:04 Download gff for
BS08435.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 939466..939676 | 953..1163 | 100 | <- | Minus |
X | 939733..940086 | 599..952 | 100 | <- | Minus |
X | 940152..940733 | 17..598 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:28:35 Download gff for
BS08435.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 833499..833709 | 953..1163 | 100 | <- | Minus |
arm_X | 833766..834119 | 599..952 | 100 | <- | Minus |
arm_X | 834185..834766 | 17..598 | 100 | | Minus |
BS08435.pep Sequence
Translation from 16 to 1164
> BS08435.pep
MAEGVESIKLEALSLSEGIRESPVCILVLGMAGSGKTTFTQKLIQHAQEK
FNPYVVNLDPACREVPYAAHVDIRDTVNYREVMKQYQLGPNGGIVTALNM
FTTKMAQFAELVRRAGERGHKWCVIDTPGQIEVFNWSASGSIITEGLATM
FPTIVVYVMDVERSACPTTFMSNMLYACSILYKTRLPFLVALNKIDLKDC
GFVMDWMTDFEAFQEAQEEEHSFVSNLTRTMSLTLDTFYENLRTCGVSAK
TGVGFTQLLTKILESVDEYETDYKPVYEKKRQERLAESATGPKPVDHVEE
DGHAVPLGLSLQDPPPHTGNSIFLMAPSLVPESAEIEDEEEMEEDAKGTA
EEQNFHSFVQNHLTAQQSKRDKLQQEQEQAQP*
BS08435.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:20:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3704-PA | 382 | CG3704-PA | 1..382 | 1..382 | 1985 | 100 | Plus |
CG2656-PA | 283 | CG2656-PA | 6..211 | 27..228 | 215 | 30.7 | Plus |
CG10222-PB | 307 | CG10222-PB | 19..208 | 27..209 | 173 | 25.3 | Plus |
CG10222-PA | 307 | CG10222-PA | 19..208 | 27..209 | 173 | 25.3 | Plus |