Clone Sequence Records
BS08437.3prime Sequence
889 bp (818 high quality bases) assembled on 2006-01-10
> BS08437.3prime
ATGGTCTAGAAAGCTTTTAGATGCCAACGATTTTATTAATGCGCTTGACG
TCGGTGATCTGGCGATCGATCTCCCCGGTTAGCTGGGTAAGTATCTCGGT
GATAGTGCGGTGCTGTTTCTCCGGCAGCTCGTACGCGTTCTTCTTGAGGT
CCTCTTGACTCTGGGCAATGTGGTAGCGCTGCTTGTTAAACGTCTTCTTA
GCAGTCTCCAGTCCAGCGGCCAGGCTCTGGGTGACCTTATTAAGTCGAAT
CACCTCCTGCGAAAACTCCCGTTCCGCAATCACACTATTGGGTAGTGAGG
CATTGGCCCTCTGCATCAGAGCGTTGCACTTGCGGACGAGCAGCTCCTGG
TTGTAGCTAATCTCCTCGAAGCGCTCGGCAAGCTTGTGGGCCCGCTCGCT
GATCAGTTCGCGTTCCTGCTCCAGGTCTTGGATCTCCTGCAGCTGTTGTT
CCTTCTTCAGCTGGATCTGGTTGATGTGGCGTGTAAATGCGGCGCGCACA
AGGTCATGTCGTTTAAGGTACTGCTCACGAAGCACCTCGATTGCCTGGTT
AAGCAGTTCGAAGCTCTCCTGGGCGGATGGCGAGGAAAGTTTATCCGCCA
AGATGGGCTGGTTAACACTACGTTGCAAAAGCGATTTAATCGTATCGACA
AACGGTGGCCCACTTTCCTGCTGAGACACTTCCGAGTCAACTGGCTTATT
CTCATTAGGTGTAACCAACAGCTGGGCATCAATTACCAGCTTAAGGCTAA
TCACCTGACCGCTGCCCAGCAGTAGAACTATACCGGCAGGAATTTGTAAT
AGGGCAAGTCCAAAGACTGCGTTCACCGTCTCACTGGAATCGAATTTTGT
GCACAGAATGTACTCTGCACTTGCAGAGACCGCCAGCTC
BS08437.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:06:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6819-PA | 2109 | mbo-RA | 1237..2109 | 889..17 | 4365 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:04:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mbo-RA | 2566 | CG6819-RA | 1288..2161 | 889..16 | 4370 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:04:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12676892..12677765 | 16..889 | 4370 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 18:04:54 has no hits.
BS08437.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:40:37 Download gff for
BS08437.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mbo-PA | 1237..2109 | 17..889 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:39:44 Download gff for
BS08437.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6819-PA | 1237..2109 | 17..889 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:11:03 Download gff for
BS08437.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mbo-RA | 1288..2161 | 16..889 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:55:37 Download gff for
BS08437.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mbo-RA | 1288..2161 | 16..889 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:55:37 Download gff for
BS08437.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12676892..12677765 | 16..889 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:11:03 Download gff for
BS08437.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8502614..8503487 | 16..889 | 100 | | Plus |
BS08437.5prime Sequence
910 bp (752 high quality bases) assembled on 2006-01-10
> BS08437.5prime
GAAGTTATCAGTCGACATGTCGCTCACCGATGTCTTGGAATTGAACAAAA
CGGAGTTGTTCGCGAAGATTCGCAATGGGTTGCCCGTGGTGCAAAGGACT
CAGAACCTGCTGGACTGCAAGGACGATCTGCTCTTTGCCTGGCACGCGAA
GGACAGCTGTCTGTTGGTTCGCAACTGGCGCTCATCGCTGGCGGCAAAGG
TGAATATCCAGTTCCAGACACTGATTCCATCGAGCTTGGTGAGCCTGGAG
GTGGACCGCGTGCTGGCCTCCAACGAGGGCTCCCTCGTGGCACTAAGTGG
ACCGCGCGGCGTTGTCATAATGGAGCTGCCCCGCCGCTGGGGCCCCGATG
GATACTACAAGGATGGCAAGCCAGTGATCACCTGCCGCACGTTCGGCCTG
GACACTCAGCTTTTCCTAAAAAACCCGCACTTGGAAGTGCGCCAGGTCCG
CTGGCATCCGCACTCCGTGTCAGACTCCACGCTGCTCGTGCTGCTCAACA
ACAACACGATTCGAGTGTACAATCACTCCAAGTTGCGCCACGTGTGGCAG
GTGGGTCCCCCGGTGCTTCGAAGTGGGGCCAATAACTCGCTATGCGACTT
TGGCGAGCTAGCCGTTGACTTTGACATCGCTCCTGCTGCAAAACCACGTG
TCACTGAACCAGAAACAGCCGGCAATAACGAAACCACTTTGGATAAGAGC
AACAAAACCCTTGTGGCGGCCAAATCGCTGCCGAAACAGGAGAGGATAGA
GTGGCCCATGGTTGTGCTCCGCGAGAATGGAAACATCTACATTTTGATGA
CCGGCGTGGATTCGGAGAATACGCGCCTGCAGGGCCCCGTTACCATAACG
CCACAGGCACATGACAATTATGGACTGGAGTCCTGTGCCCTAATGATTAT
CCCATCACTT
BS08437.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:06:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6819-PA | 2109 | mbo-RA | 1..894 | 17..910 | 4470 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:46:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mbo-RA | 2566 | CG6819-RA | 52..945 | 17..910 | 4470 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:45:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12678108..12679001 | 910..17 | 4470 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 23:46:00 has no hits.
BS08437.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:40:38 Download gff for
BS08437.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mbo-PA | 1..894 | 17..910 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:39:46 Download gff for
BS08437.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6819-PA | 1..894 | 17..910 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:39:36 Download gff for
BS08437.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mbo-RA | 46..945 | 9..910 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 01:00:12 Download gff for
BS08437.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mbo-RA | 46..945 | 9..910 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 01:00:12 Download gff for
BS08437.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12678108..12679007 | 9..910 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:39:36 Download gff for
BS08437.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8503830..8504729 | 9..910 | 99 | | Minus |
BS08437.complete Sequence
2141 bp assembled on 2010-05-10
GenBank Submission: KX804771
> BS08437.complete
GAAGTTATCAGTCGACATGTCGCTCACCGATGTCTTGGAATTGAACAAAA
CGGAGTTGTTCGCGAAGATTCGCAATGGGTTGCCCGTGGTGCAAAGGACT
CAGAACCTGCTGGACTGCAAGGACGATCTGCTCTTTGCCTGGCACGCGAA
GGACAGCTGTCTGTTGGTTCGCAACTGGCGCTCATCGCTGGCGGCAAAGG
TGAATATCCAGTTCCAGACACTGATTCCATCGAGCTTGGTGAGCCTGGAG
GTGGACCGCGTGCTGGCCTCCAACGAGGGCTCCCTCGTGGCACTAAGTGG
ACCGCGCGGCGTTGTCATAATGGAGCTGCCCCGCCGCTGGGGCCCCGATG
GATACTACAAGGATGGCAAGCCAGTGATCACCTGCCGCACGTTCGGCCTG
GACACTCAGCTTTTCCTAAAAAACCCGCACTTGGAAGTGCGCCAGGTCCG
CTGGCATCCGCACTCCGTGTCAGACTCCACGCTGCTCGTGCTGCTCAACA
ACAACACGATTCGAGTGTACAATCACTCCAAGTTGCGCCACGTGTGGCAG
GTGGGTCCCCCGGTGCTTCGAAGTGGGGCCAATAACTCGCTATGCGACTT
TGGCGAGCTAGCCGTTGACTTTGACATCGCTCCTGCTGCAAAACCACGTG
TCACTGAACCAGAAACAGCCGGCAATAACGAAACCACTTTGGATAAGAGC
AACAAAACCCTTGTGGCGGCCAAATCGCTGCCGAAACAGGAGAGGATAGA
GTGGCCCATGGTTGTGCTCCGCGAGAATGGAAACATCTACATTTTGATGA
CCGGCGTGGATTCGGAGAATACGCGCCTGCAGGGCCCCGTTACCATAACG
CCACAGGCACATGACAATTATGGACTGGAGTCCTGTGCCCTAATGATTAT
CCCATCACTTCCGCCGACCATTGTTATAGCTGAATCCAATGGAAAGCTTC
ACCATGCTCTGCTTATGGAGGCGGAGGCCACTGAGCATTCTTTCAATGAG
GTTGACGACTCTGTGTTGATTGAACCCGCCGAATACGTTGTACATGTACT
AGAAACTGTCGAACTTGAGCTGGGAATATCTGCACCCGCAACTGGAAAAG
AAGGAGGCAACTGTCCCATATACTTAAAGCGGGATTTGATCAATGAGCTT
CGCTACTTTGCCTACCACAACGCAGGACTTCATGCCGTTACGGTCAGCTT
TATCGCAGAGCTGCAACGTTACTTGGAAAGCGAGTCCGATGAAGATCGTC
TAGAGCTGGCGGTCTCTGCAAGTGCAGAGTACATTCTGTGCACAAAATTC
GATTCCAGTGAGACGGTGAACGCAGTCTTTGGACTTGCCCTATTACAAAT
TCCTGCCGGTATAGTTCTACTGCTGGGCAGCGGTCAGGTGATTAGCCTTA
AGCTGGTAATTGATGCCCAGCTGTTGGTTACACCTAATGAGAATAAGCCA
GTTGACTCGGAAGTGTCTCAGCAGGAAAGTGGGCCACCGTTTGTCGATAC
GATTAAATCGCTTTTGCAACGTAGTGTTAACCAGCCCATCTTGGCGGATA
AACTTTCCTCGCCATCCGCCCAGGAGAGCTTCGAACTGCTTAACCAGGCA
ATCGAGGTGCTTCGTGAGCAGTACCTTAAACGACATGACCTTGTGCGCGC
CGCATTTACACGCCACATCAACCAGATCCAGCTGAAGAAGGAACAACAGC
TGCAGGAGATCCAAGACCTGGAGCAGGAACGCGAACTGATCAGCGAGCGG
GCCCACAAGCTTGCCGAGCGCTTCGAGGAGATTAGCTACAACCAGGAGCT
GCTCGTCCGCAAGTGCAACGCTCTGATGCAGAGGGCCAATGCCTCACTAC
CCAATAGTGTGATTGCGGAACGGGAGTTTTCGCAGGAGGTGATTCGACTT
AATAAGGTCACCCAGAGCCTGGCCGCTGGACTGGAGACTGCTAAGAAGAC
GTTTAACAAGCAGCGCTACCACATTGCCCAGAGTCAAGAGGACCTCAAGA
AGAACGCGTACGAGCTGCCGGAGAAACAGCACCGCACTATCACCGAGATA
CTTACCCAGCTAACCGGGGAGATCGATCGCCAGATCACCGACGTCAAGCG
CATTAATAAAATCGTTGGCATCTAAAAGCTTTCTAGACCAT
BS08437.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:57:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mbo-RA | 2109 | CG6819-PA | 1..2109 | 17..2125 | 10545 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:57:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mbo-RA | 2566 | CG6819-RA | 52..2161 | 17..2126 | 10550 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:57:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12676892..12679001 | 2126..17 | 10550 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:57:24 has no hits.
BS08437.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-10 11:55:52 Download gff for
BS08437.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mbo-RA | 44..2150 | 17..2123 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:06:42 Download gff for
BS08437.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mbo-RA | 52..2158 | 17..2123 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:18:14 Download gff for
BS08437.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mbo-RA | 52..2158 | 17..2123 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:18:14 Download gff for
BS08437.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12676895..12679001 | 17..2123 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:06:42 Download gff for
BS08437.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8502617..8504723 | 17..2123 | 100 | | Minus |
BS08437.pep Sequence
Translation from 16 to 2124
> BS08437.pep
MSLTDVLELNKTELFAKIRNGLPVVQRTQNLLDCKDDLLFAWHAKDSCLL
VRNWRSSLAAKVNIQFQTLIPSSLVSLEVDRVLASNEGSLVALSGPRGVV
IMELPRRWGPDGYYKDGKPVITCRTFGLDTQLFLKNPHLEVRQVRWHPHS
VSDSTLLVLLNNNTIRVYNHSKLRHVWQVGPPVLRSGANNSLCDFGELAV
DFDIAPAAKPRVTEPETAGNNETTLDKSNKTLVAAKSLPKQERIEWPMVV
LRENGNIYILMTGVDSENTRLQGPVTITPQAHDNYGLESCALMIIPSLPP
TIVIAESNGKLHHALLMEAEATEHSFNEVDDSVLIEPAEYVVHVLETVEL
ELGISAPATGKEGGNCPIYLKRDLINELRYFAYHNAGLHAVTVSFIAELQ
RYLESESDEDRLELAVSASAEYILCTKFDSSETVNAVFGLALLQIPAGIV
LLLGSGQVISLKLVIDAQLLVTPNENKPVDSEVSQQESGPPFVDTIKSLL
QRSVNQPILADKLSSPSAQESFELLNQAIEVLREQYLKRHDLVRAAFTRH
INQIQLKKEQQLQEIQDLEQERELISERAHKLAERFEEISYNQELLVRKC
NALMQRANASLPNSVIAEREFSQEVIRLNKVTQSLAAGLETAKKTFNKQR
YHIAQSQEDLKKNAYELPEKQHRTITEILTQLTGEIDRQITDVKRINKIV
GI*
BS08437.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:19:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mbo-PA | 702 | CG6819-PA | 1..702 | 1..702 | 3554 | 100 | Plus |
