Clone Sequence Records
BS08438.3prime Sequence
770 bp (768 high quality bases) assembled on 2006-01-10
> BS08438.3prime
ATGGTCTAGAAAGCTTTCAATCCTCGTCGTCAAGTGTGAGTACTTTTGTC
TGGAAGCGCATTCGTTTGGTATTCTTTACTACACCGTTGGTGAGCAGGTT
GGCCCCTCGATCCGGACAGGGCAGTTCATTCCATAGGCGCTTTACGCGCA
CCACAGCCTCAGTATTGAAGTCGTATCTCTTGGGGGCGGAAGATGGTTCA
GGTACAGACGCAATGGTTGGGAGTTTGCGTAGTTTGACAACTGGCTGCAG
CTGGCGGCAGCTGCTATAGCTGCTCACACTGGCCTTATCGTCGACATCCT
CGGCGGACTCCGCGTTTCGTTCACATCCATTGCCGGCCAGCGAGCAGCCT
CGCTTCTGCGGAGATTCTTCTTCGGATTTGGCTGCACGTAAGTTTTCCTG
TTTCTCGTACTCATTCAAAGTGGGTGGTGCTGCAGCGCATATTTTACCCG
GCTCCTCGGGATGACAGCCCATGTCCTGACCTTTCAGCCAATTATCGTAT
CGCTCTGGCTGGAAACGGCGTACGAAGGTCTCCATCGAGATCTTAACCAT
GTCGCTGCGGCATCGGCAAATACTAGCCCGCTTGCCGTACTCGATCCAAC
GCTTCGACGCAAAGTTGGTCGACTCGGCGCCGTTGAAGCCATGATTGAAC
CCGGCATGGTAGCCGAAGGGAAATGTAATCATGATTTCGCCCGCTTCCTG
CGTGATCTTGTTGTAAGGTATGTTGTGCTGGCGCAGCACCTTCGGACTGA
TCATGGTCATCTTATGGCGA
BS08438.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:06:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15835-PA | 1488 | CG15835-RA | 735..1488 | 770..17 | 3770 | 100 | Minus |
| CG33182-PA | 1359 | CG33182-RA | 769..869 | 709..609 | 230 | 89.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:16:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Kdm4A-RA | 2022 | CG15835-RA | 807..1560 | 770..17 | 3770 | 100 | Minus |
| Kdm4A-RB | 2004 | CG15835-RB | 807..1542 | 770..17 | 3490 | 97.6 | Minus |
| Kdm4B-RE | 5718 | CG33182-RE | 1378..1556 | 709..531 | 445 | 83.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:16:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7923669..7924046 | 393..770 | 1890 | 100 | Plus |
| 2R | 25286936 | 2R | 7923237..7923612 | 17..392 | 1880 | 100 | Plus |
| 2R | 25286936 | 2R | 13186747..13186924 | 531..708 | 440 | 83.1 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:16:48 has no hits.
BS08438.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:40:39 Download gff for
BS08438.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15835-PA | 736..1488 | 17..769 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:39:47 Download gff for
BS08438.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15835-PA | 736..1488 | 17..769 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:22:05 Download gff for
BS08438.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Kdm4A-RA | 808..1565 | 11..769 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:28:26 Download gff for
BS08438.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Kdm4A-RA | 808..1565 | 11..769 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:28:26 Download gff for
BS08438.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7923232..7923612 | 11..392 | 99 | <- | Plus |
| 2R | 7923669..7924045 | 393..769 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:22:05 Download gff for
BS08438.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3810737..3811117 | 11..392 | 99 | <- | Plus |
| arm_2R | 3811174..3811550 | 393..769 | 100 | | Plus |
BS08438.5prime Sequence
853 bp (777 high quality bases) assembled on 2006-01-10
> BS08438.5prime
GAAGTTATCAGTCGACATGTCCACGAGATCTTCATTCGCCGATGAAGAGC
AGAACAAAGTGCCCCGTATCATGACCTTCCGTCCCAGCTACGAGGAGTTT
CAAAATTTTTCCGCCTACATTGAGTACATTGAGTCTCGGGGAGCACACTT
AGCCGGCTTGGCCAAAATCCAACCACCTGCGGAATGGGTGCCCCGAAAGT
CGGGCTACGACATAGACAACATCAACATGACCATTCCAGCGCCGATTTGC
CAAGTAGTCACTGGGGCGCACGGGGTGTACCAGCAAATCAACATCCAGCA
GCGCCGGCAGATGACCTTGCGCCAATTCATGGAGAAGGCCAACTCGGAGC
TGCACCAGACACCGAGGCACTTCGACTACGACGATCTGGAGCGCAAGTAC
TGGAAGAACATCACCTACATATCGCCACTGTATGCAGCCGATGTCAAGGG
ATCGCTGAGTGATGAAGACCTTGACGTTTGGAACATTGGACGCTTGGACA
CCATATTAAACTTGGTCAACACTGACTACAACATAATCATCGATGGGGTA
AACACGGCTTACCTCTACTTTGGCATGTGGAAGAGCTCTTTTGCCTGGCA
TACCGAGGACATGGATCTGTATTCTATTAACTATCTGCATTTTGGAGCAC
CCAAAACCTGGTACGCCATTCCGCCGGCGTATGGCAGACGTCTGGAGAAG
CTGGCGAACGAAACCTTCTCTGAGAACTACCAGGAATGCAATGCCTATCT
TCGCCATAAGATGACCATGATCAGTCCGAAGGTGCTGCGCCAGCACAACA
TACCTTACAACAAGATCACGCAGGGAGCGGGCGAAATCATGATTACCTTT
CCC
BS08438.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:06:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15835-PA | 1488 | CG15835-RA | 1..837 | 17..853 | 4135 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:45:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Kdm4A-RB | 2004 | CG15835-RB | 73..909 | 17..853 | 4155 | 99.8 | Plus |
| Kdm4A-RA | 2022 | CG15835-RA | 73..909 | 17..853 | 4155 | 99.8 | Plus |
| Kdm4B-RE | 5718 | CG33182-RE | 1117..1229 | 551..663 | 205 | 78.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:45:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7923944..7924533 | 853..264 | 2920 | 99.7 | Minus |
| 2R | 25286936 | 2R | 7924761..7924916 | 172..17 | 780 | 100 | Minus |
| 2R | 25286936 | 2R | 7924597..7924689 | 265..173 | 465 | 100 | Minus |
| 2R | 25286936 | 2R | 13187132..13187244 | 663..551 | 205 | 78.8 | Minus |
Blast to na_te.dros performed on 2015-02-10 23:45:40 has no hits.
BS08438.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:40:40 Download gff for
BS08438.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15835-PA | 1..837 | 17..853 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:39:49 Download gff for
BS08438.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15835-PA | 1..837 | 17..853 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:39:31 Download gff for
BS08438.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Kdm4A-RA | 64..909 | 8..853 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:59:50 Download gff for
BS08438.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Kdm4A-RA | 64..909 | 8..853 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:59:50 Download gff for
BS08438.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7923944..7924532 | 265..853 | 99 | <- | Minus |
| 2R | 7924598..7924689 | 173..264 | 100 | <- | Minus |
| 2R | 7924761..7924925 | 8..172 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:39:31 Download gff for
BS08438.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3811449..3812037 | 265..853 | 99 | <- | Minus |
| arm_2R | 3812103..3812194 | 173..264 | 100 | <- | Minus |
| arm_2R | 3812266..3812430 | 8..172 | 97 | | Minus |
BS08438.complete Sequence
1520 bp assembled on 2007-10-17
GenBank Submission: FJ636157
> BS08438.complete
GAAGTTATCAGTCGACATGTCCACGAGATCTTCATTCGCCGATGAAGAGC
AGAACAAAGTGCCCCGTATCATGACCTTCCGTCCCAGCTACGAGGAGTTT
CAAAATTTTTCCGCCTACATTGAGTACATTGAGTCTCGGGGAGCACACTT
AGCCGGCTTGGCCAAAATCCAACCACCTGCGGAATGGGTGCCCCGAAAGT
CGGGCTACGACATAGACAACATCAACATGACCATTCCAGCGCCGATTTGC
CAAGTAGTCACTGGGGCGCACGGGGTGTACCAGCAAATCAACATCCAGCA
GCGCCGGCAGATGACCTTGCGCCAATTCATGGAGAAGGCCAACTCGGAGC
TGCACCAGACACCGAGGCACTTCGACTACGACGATCTGGAGCGCAAGTAC
TGGAAGAACATCACCTACATATCGCCACTGTATGCAGCCGATGTCAAGGG
ATCGCTGAGTGATGAAGACCTTGACGTTTGGAACATTGGACGCTTGGACA
CCATATTAAACTTGGTCAACACTGACTACAACATAATCATCGATGGGGTA
AACACGGCTTACCTCTACTTTGGCATGTGGAAGAGCTCTTTTGCCTGGCA
TACCGAGGACATGGATCTGTATTCTATTAACTATCTGCATTTTGGAGCAC
CCAAAACCTGGTACGCCATTCCGCCGGCGTATGGCAGACGTCTGGAGAAG
CTGGCGAACGAAACCTTCTCTGAGAACTACCAGGAATGCAATGCCTATCT
TCGCCATAAGATGACCATGATCAGTCCGAAGGTGCTGCGCCAGCACAACA
TACCTTACAACAAGATCACGCAGGAAGCGGGCGAAATCATGATTACATTT
CCCTTCGGCTACCATGCCGGGTTCAATCATGGCTTCAACGGCGCCGAGTC
GACCAACTTTGCGTCGAAGCGTTGGATCGAGTACGGCAAGCGGGCTAGTA
TTTGCCGATGCCGCAGCGACATGGTTAAGATCTCGATGGAGACCTTCGTA
CGCCGTTTCCAGCCAGAGCGATACGATAATTGGCTGAAAGGTCAGGACAT
GGGCTGTCATCCCGAGGAGCCGGGTAAAATATGCGCTGCAGCACCACCCA
CTTTGAATGAGTACGAGAAACAGGAAAACTTACGTGCAGCCAAATCCGAA
GAAGAATCTCCGCAGAAGCGAGGCTGCTCGCTGGCCGGCAATGGATGTGA
ACGAAACGCGGAGTCCGCCGAGGATGTCGACGATAAGGCCAGTGTGAGCA
GCTATAGCAGCTGCCGCCAGCTGCAGCCAGTTGTCAAACTACGCAAACTC
CCAACCATTGCGTCTGTACCTGAACCATCTTCCGCCCCCAAGAGATACGA
CTTCAATACTGAGGCTGTGGTGCGCGTAAAGCGCCTATGGAATGAACTGC
CCTGTCCGGATCGAGGGGCCAACCTGCTCACCAACGGTGTAGTAAAGAAT
ACCAAACGAATGCGCTTCCAGACAAAAGTACTCACACTTGACGACGAGGA
TTGAAAGCTTTCTAGACCAT
BS08438.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:59:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Kdm4A-RA | 1488 | CG15835-PA | 1..1488 | 17..1504 | 7440 | 100 | Plus |
| Kdm4A-RB | 1470 | CG15835-PB | 1..1470 | 17..1504 | 7135 | 98.8 | Plus |
| Kdm4B-RE | 2154 | CG33182-PE | 508..947 | 551..990 | 505 | 74.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:59:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Kdm4A-RA | 2022 | CG15835-RA | 73..1560 | 17..1504 | 7440 | 100 | Plus |
| Kdm4A-RB | 2004 | CG15835-RB | 73..1542 | 17..1504 | 7135 | 98.8 | Plus |
| Kdm4B-RE | 5718 | CG33182-RE | 1117..1556 | 551..990 | 505 | 74.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:59:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7923669..7924533 | 1128..264 | 4325 | 100 | Minus |
| 2R | 25286936 | 2R | 7923237..7923612 | 1504..1129 | 1880 | 100 | Minus |
| 2R | 25286936 | 2R | 7924761..7924916 | 172..17 | 780 | 100 | Minus |
| 2R | 25286936 | 2R | 7924597..7924689 | 265..173 | 465 | 100 | Minus |
| 2R | 25286936 | 2R | 13186747..13186924 | 990..813 | 440 | 83.1 | Minus |
| 2R | 25286936 | 2R | 13187132..13187244 | 663..551 | 205 | 78.8 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:59:07 has no hits.
BS08438.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:09:14 Download gff for
BS08438.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15835-RA | 1..1488 | 17..1504 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:39:03 Download gff for
BS08438.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15835-RA | 59..1560 | 8..1510 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:40:59 Download gff for
BS08438.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Kdm4A-RA | 73..1559 | 17..1503 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:45:04 Download gff for
BS08438.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15835-RA | 68..1554 | 17..1503 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:15:31 Download gff for
BS08438.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Kdm4A-RA | 73..1559 | 17..1503 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:15:31 Download gff for
BS08438.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7924761..7924916 | 17..172 | 100 | | Minus |
| 2R | 7924598..7924689 | 173..264 | 100 | <- | Minus |
| 2R | 7923238..7923612 | 1129..1503 | 100 | <- | Minus |
| 2R | 7923669..7924532 | 265..1128 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:40:59 Download gff for
BS08438.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3812103..3812194 | 173..264 | 100 | <- | Minus |
| arm_2R | 3812266..3812421 | 17..172 | 100 | | Minus |
| arm_2R | 3810743..3811117 | 1129..1503 | 100 | <- | Minus |
| arm_2R | 3811174..3812037 | 265..1128 | 100 | <- | Minus |
BS08438.pep Sequence
Translation from 16 to 1503
> BS08438.pep
MSTRSSFADEEQNKVPRIMTFRPSYEEFQNFSAYIEYIESRGAHLAGLAK
IQPPAEWVPRKSGYDIDNINMTIPAPICQVVTGAHGVYQQINIQQRRQMT
LRQFMEKANSELHQTPRHFDYDDLERKYWKNITYISPLYAADVKGSLSDE
DLDVWNIGRLDTILNLVNTDYNIIIDGVNTAYLYFGMWKSSFAWHTEDMD
LYSINYLHFGAPKTWYAIPPAYGRRLEKLANETFSENYQECNAYLRHKMT
MISPKVLRQHNIPYNKITQEAGEIMITFPFGYHAGFNHGFNGAESTNFAS
KRWIEYGKRASICRCRSDMVKISMETFVRRFQPERYDNWLKGQDMGCHPE
EPGKICAAAPPTLNEYEKQENLRAAKSEEESPQKRGCSLAGNGCERNAES
AEDVDDKASVSSYSSCRQLQPVVKLRKLPTIASVPEPSSAPKRYDFNTEA
VVRVKRLWNELPCPDRGANLLTNGVVKNTKRMRFQTKVLTLDDED*
BS08438.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:39:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Kdm4A-PA | 495 | CG15835-PA | 1..495 | 1..495 | 2657 | 100 | Plus |
| Kdm4A-PB | 489 | CG15835-PB | 1..489 | 1..495 | 2604 | 98.6 | Plus |
| Kdm4B-PD | 590 | CG33182-PD | 2..380 | 11..380 | 1380 | 65.8 | Plus |
| Kdm4B-PC | 590 | CG33182-PC | 2..380 | 11..380 | 1380 | 65.8 | Plus |
| Kdm4B-PB | 590 | CG33182-PB | 2..380 | 11..380 | 1380 | 65.8 | Plus |
