Clone BS08439 Report

Search the DGRC for BS08439

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:84
Well:39
Vector:pDNR-Dual
Associated Gene/Transcriptalpha-Est1-RA
Protein status:BS08439.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08439.3prime Sequence

819 bp (797 high quality bases) assembled on 2006-01-10

> BS08439.3prime
ATGGTCTAGAAAGCTTCTAAAACAAGTCGTTTTTATCGTATAGTCTATCC
CAAATCCGATTCTGTTTCGACTCCGGCAGCACAATGAACTCCAGTTGTTT
TCCAATATTGAGACACATCTGCGGACCTTTCTCATCTAGTGCCTCCCATG
TGGTCGGGCCGATCTGTGGACAATTGGGATTGTCGTTTCGGGCGAATGCC
ACCCACATGCCCACCAGTCTCTGTATGGTTTGGTACTCCATCGAGGACTT
ATCCACCTTGTTGGCCAAAATGTGATAGAAAAGGTAGGAGAGATCGTCGG
CATGACTAACTCCGCGAACGTGTTTTCCGCACATCACCTGCCGGAAGTGA
TTGAAATGGGGCGAGTCCACATCGAAGCGGTACAGGTAGGTGGGCGTTGC
GGGGGCGTGGCTGAGCCGGGCCAATACAGTGCGATGAATGCCATGCCAAA
AGTGTTTAACGGACAGTATGTGCAGGCACTCATTGAACTCCATTCGCCCT
CGAGTCGCATCATCGAAGTTATCCACCTTAAATTGACGTAGCAGATCCTT
AAGATGCGACTGGGTACTCTTCTCCCTGATCTCCCGAGGAATTAGGACCT
CAAAAGCACTCAGCATGTGTTCCTCGTCGTGCAGGGTACTCTGGTAGGAG
AACAGACCTTCAAAGGAGTTGCCGCCCAGGATCAGCGGCAGGTCATTACC
CCAAGCTTCCGGCAGCATCTCCCTGTGGCAACGGGGCAAAACGCAATCCC
TGGTGATATATGGTTCCACAACGGGAGTAAAGGGAAACAGGACGTACTGC
CGCCGTTCCTCTTGGGAGA

BS08439.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:07:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG1031-PA 1698 alpha-Est1-RA 896..1698 819..17 4015 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:28:53
Subject Length Description Subject Range Query Range Score Percent Strand
alpha-Est1-RA 2123 CG1031-RA 1082..1884 819..17 4015 100 Minus
alpha-Est2-RB 2141 CG2505-RB 1594..1797 406..203 240 75.1 Minus
alpha-Est2-RA 1958 CG2505-RA 1411..1614 406..203 240 75.1 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:28:48
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7545972..7546774 17..819 4015 100 Plus
3R 32079331 3R 7544683..7544886 406..203 240 74.5 Minus
Blast to na_te.dros performed on 2015-02-11 11:28:51 has no hits.

BS08439.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:40:41 Download gff for BS08439.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1031-PA 897..1698 17..818 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:39:51 Download gff for BS08439.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1031-PA 897..1698 17..818 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 07:52:26 Download gff for BS08439.3prime
Subject Subject Range Query Range Percent Splice Strand
alpha-Est1-RA 1083..1884 17..818 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:50:02 Download gff for BS08439.3prime
Subject Subject Range Query Range Percent Splice Strand
alpha-Est1-RA 1083..1884 17..818 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:50:02 Download gff for BS08439.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 7545972..7546773 17..818 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 07:52:26 Download gff for BS08439.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3371694..3372495 17..818 100   Plus

BS08439.5prime Sequence

837 bp (806 high quality bases) assembled on 2006-01-10

> BS08439.5prime
GAAGTTATCAGTCGACATGGAGATCCGAGTGGGAGTGGGCGATCTGCTGA
AAATGGGCACCAAGCTCATTGGCCACAAGATCGTCCAGTATCGCCTTGGC
ACAAAGCAGACGAAGGTGGTCTGCACCAGGGATGGCCAGGTGCGCGGACA
TCGCCGAAGGACACTCTACGACGAGGAGATGTACTTCGCCTTCGAGGGAA
TCCCCTTTGCACAGCCGCCGGTGGGGGAGCTGCGCTTCCGAGCCCCCCAG
CCACCACATCCCTGGTTGGGGGTGCGGGATTGCACCTATCCGCGGGCCAA
GCCGATGCAAAAGCACTTCGTGCTCAGCATCGTCGAAGGCAGCGAGGATT
GCCTGTACCTGAACGTATATTCCAAGCGCCTGAGATCGGACAAGCCGCTG
CCCGTGATCGTGTGGATCTATGGCGGTGGATTCCAGTTCGGCGAGGCTGG
TCGAGATTTCTACAGTCCAGACTACTTTATGCAGCAAGACGTAGTGGTTG
TCACATTCAATTATAGGGTGGGCGCATTGGGCTTCCTCAGCCTCGCGGAT
CGCGACTTGGATGTGCCCGGAAATGCTGGTCTCAAGGACCAAGTGATGGC
CCTTCGCTGGATCAGTCAGAACATAGCCCAATTCAATGGAGATCCCCAAA
ATATAACCGTGATGGGCGAGAGTGCGGGAGCAGCCTCCGTTCACGCGTTG
ATGACCACCGAGCAAACCCGAGGGCTGTTCCACAAGGCCATCATGCAATC
GGGATCCATGTTCTGCGAGTGGGCCAATGAGCCAAGTGGCAGGTGGGCAT
ACCGACTGGCCTGCCAATTGGGATACTCGGGCAGTGA

BS08439.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:07:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG1031-PA 1698 alpha-Est1-RA 1..821 17..837 4105 100 Plus
CG1128-PB 1665 alpha-Est9-RB 332..380 399..447 145 91.8 Plus
CG1128-PA 1719 alpha-Est9-RA 332..380 399..447 145 91.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 02:55:35
Subject Length Description Subject Range Query Range Score Percent Strand
alpha-Est1-RA 2123 CG1031-RA 187..1007 17..837 4105 100 Plus
alpha-Est2-RB 2141 CG2505-RB 396..1027 124..755 550 73.5 Plus
alpha-Est2-RA 1958 CG2505-RA 213..844 124..755 550 73.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 02:55:29
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7547769..7548236 531..64 2340 100 Minus
3R 32079331 3R 7546849..7547156 837..530 1540 100 Minus
3R 32079331 3R 7543919..7544116 558..755 405 80.3 Plus
3R 32079331 3R 7548891..7548938 64..17 240 100 Minus
2R 25286936 2R 22550414..22550565 158..309 220 76.3 Plus
3R 32079331 3R 7487996..7488205 610..401 195 72.9 Minus
3R 32079331 3R 7496807..7496855 447..399 185 91.8 Minus
Blast to na_te.dros performed on 2015-02-10 02:55:32 has no hits.

BS08439.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:40:42 Download gff for BS08439.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1031-PA 1..820 17..836 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:39:52 Download gff for BS08439.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1031-PA 1..820 17..836 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:41:18 Download gff for BS08439.5prime
Subject Subject Range Query Range Percent Splice Strand
alpha-Est1-RA 187..1006 17..836 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:12:05 Download gff for BS08439.5prime
Subject Subject Range Query Range Percent Splice Strand
alpha-Est1-RA 187..1006 17..836 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:12:05 Download gff for BS08439.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 7546850..7547155 531..836 100 <- Minus
3R 7547770..7548236 64..530 100 <- Minus
3R 7548892..7548938 17..63 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:41:18 Download gff for BS08439.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3372572..3372877 531..836 100 <- Minus
arm_3R 3373492..3373958 64..530 100 <- Minus
arm_3R 3374614..3374660 17..63 100   Minus

BS08439.complete Sequence

1730 bp assembled on 2007-10-25

GenBank Submission: FJ636158

> BS08439.complete
GAAGTTATCAGTCGACATGGAGATCCGAGTGGGAGTGGGCGATCTGCTGA
AAATGGGCACCAAGCTCATTGGCCACAAGATCGTCCAGTATCGCCTTGGC
ACAAAGCAGACGAAGGTGGTCTGCACCAGGGATGGCCAGGTGCGCGGACA
TCGCCGAAGGACACTCTACGACGAGGAGATGTACTTCGCCTTCGAGGGAA
TCCCCTTTGCACAGCCGCCGGTGGGGGAGCTGCGCTTCCGAGCCCCCCAG
CCACCACATCCCTGGTTGGGGGTGCGGGATTGCACCTATCCGCGGGCCAA
GCCGATGCAAAAGCACTTCGTGCTCAGCATCGTCGAAGGCAGCGAGGATT
GCCTGTACCTGAACGTATATTCCAAGCGCCTGAGATCGGACAAGCCGCTG
CCCGTGATCGTGTGGATCTATGGCGGTGGATTCCAGTTCGGCGAGGCTGG
TCGAGATTTCTACAGTCCAGACTACTTTATGCAGCAAGACGTAGTGGTTG
TCACATTCAATTATAGGGTGGGCGCATTGGGCTTCCTCAGCCTCGCGGAT
CGCGACTTGGATGTGCCCGGAAATGCTGGTCTCAAGGACCAAGTGATGGC
CCTTCGCTGGATCAGTCAGAACATAGCCCAATTCAATGGAGATCCCCAAA
ATATAACCGTGATGGGCGAGAGTGCGGGAGCAGCCTCCGTTCACGCGTTG
ATGACCACCGAGCAAACCCGAGGGCTGTTCCACAAGGCCATCATGCAATC
GGGATCCATGTTCTGCGAGTGGGCCAATGAGCCAAGTGGCAGGTGGGCAT
ACCGACTGGCCTGCCAATTGGGATACTCGGGCAGTGAGAACGAGAAGGAA
GTGTTTCGATACCTTCAGAAAGCACCCGCCTCCGAAATGGCCGCACAGGG
TATTACTCTTGTCTCCCAAGAGGAACGGCGGCAGTACGTCCTGTTTCCCT
TTACTCCCGTTGTGGAACCATATATCACCAGGGATTGCGTTTTGCCCCGT
TGCCACAGGGAGATGCTGCCGGAAGCTTGGGGTAATGACCTGCCGCTGAT
CCTGGGCGGCAACTCCTTTGAAGGTCTGTTCTCCTACCAGAGTACCCTGC
ACGACGAGGAACACATGCTGAGTGCTTTTGAGGTCCTAATTCCTCGGGAG
ATCAGGGAGAAGAGTACCCAGTCGCATCTTAAGGATCTGCTACGTCAATT
TAAGGTGGATAACTTCGATGATGCGACTCGAGGGCGAATGGAGTTCAATG
AGTGCCTGCACATACTGTCCGTTAAACACTTTTGGCATGGCATTCATCGC
ACTGTATTGGCCCGGCTCAGCCACGCCCCCGCAACGCCCACCTACCTGTA
CCGCTTCGATGTGGACTCGCCCCATTTCAATCACTTCCGGCAGGTGATGT
GCGGAAAACACGTTCGCGGAGTTAGTCATGCCGACGATCTCTCCTACCTT
TTCTATCACATTTTGGCCAACAAGGTGGATAAGTCCTCGATGGAGTACCA
AACCATACAGAGACTGGTGGGCATGTGGGTGGCATTCGCCCGAAACGACA
ATCCCAATTGTCCACAGATCGGCCCGACCACATGGGAGGCACTAGATGAG
AAAGGTCCGCAGATGTGTCTCAATATTGGAAAACAACTGGAGTTCATTGT
GCTGCCGGAGTCGAAACAGAATCGGATTTGGGATAGACTATACGATAAAA
ACGACTTGTTTTAGAAGCTTTCTAGACCAT

BS08439.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:35:45
Subject Length Description Subject Range Query Range Score Percent Strand
alpha-Est1-RA 1698 CG1031-PA 1..1698 17..1714 8490 100 Plus
alpha-Est2-RB 1701 CG2505-PB 108..739 124..755 505 72 Plus
alpha-Est2-RA 1701 CG2505-PA 108..739 124..755 505 72 Plus
alpha-Est2-RB 1701 CG2505-PB 1306..1509 1325..1528 240 74.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:35:46
Subject Length Description Subject Range Query Range Score Percent Strand
alpha-Est1-RA 2123 CG1031-RA 187..1884 17..1714 8490 100 Plus
alpha-Est2-RB 2141 CG2505-RB 396..1027 124..755 505 72 Plus
alpha-Est2-RA 1958 CG2505-RA 213..844 124..755 505 72 Plus
alpha-Est2-RB 2141 CG2505-RB 1594..1797 1325..1528 240 74.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:35:42
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7545972..7547156 1714..530 5925 100 Minus
3R 32079331 3R 7547769..7548236 531..64 2340 100 Minus
3R 32079331 3R 7543919..7544116 558..755 405 80.3 Plus
3R 32079331 3R 7544683..7544886 1325..1528 240 74.5 Plus
3R 32079331 3R 7548891..7548938 64..17 240 100 Minus
2R 25286936 2R 22550414..22550565 158..309 220 76.3 Plus
3R 32079331 3R 7487996..7488205 610..401 195 72.9 Minus
3R 32079331 3R 7496807..7496855 447..399 185 91.8 Minus
Blast to na_te.dros performed on 2014-11-27 07:35:43 has no hits.

BS08439.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:09:16 Download gff for BS08439.complete
Subject Subject Range Query Range Percent Splice Strand
alpha-Est1-RA 1..1698 17..1714 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:39:05 Download gff for BS08439.complete
Subject Subject Range Query Range Percent Splice Strand
alpha-Est1-RA 185..1882 17..1714 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:23:54 Download gff for BS08439.complete
Subject Subject Range Query Range Percent Splice Strand
alpha-Est1-RA 187..1884 17..1714 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:33:00 Download gff for BS08439.complete
Subject Subject Range Query Range Percent Splice Strand
alpha-Est1-RA 185..1882 17..1714 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:01:16 Download gff for BS08439.complete
Subject Subject Range Query Range Percent Splice Strand
alpha-Est1-RA 187..1884 17..1714 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:01:16 Download gff for BS08439.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7545972..7547155 531..1714 100 <- Minus
3R 7547770..7548236 64..530 100 <- Minus
3R 7548892..7548938 17..63 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:23:54 Download gff for BS08439.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3371694..3372877 531..1714 100 <- Minus
arm_3R 3373492..3373958 64..530 100 <- Minus
arm_3R 3374614..3374660 17..63 100   Minus

BS08439.pep Sequence

Translation from 16 to 1713

> BS08439.pep
MEIRVGVGDLLKMGTKLIGHKIVQYRLGTKQTKVVCTRDGQVRGHRRRTL
YDEEMYFAFEGIPFAQPPVGELRFRAPQPPHPWLGVRDCTYPRAKPMQKH
FVLSIVEGSEDCLYLNVYSKRLRSDKPLPVIVWIYGGGFQFGEAGRDFYS
PDYFMQQDVVVVTFNYRVGALGFLSLADRDLDVPGNAGLKDQVMALRWIS
QNIAQFNGDPQNITVMGESAGAASVHALMTTEQTRGLFHKAIMQSGSMFC
EWANEPSGRWAYRLACQLGYSGSENEKEVFRYLQKAPASEMAAQGITLVS
QEERRQYVLFPFTPVVEPYITRDCVLPRCHREMLPEAWGNDLPLILGGNS
FEGLFSYQSTLHDEEHMLSAFEVLIPREIREKSTQSHLKDLLRQFKVDNF
DDATRGRMEFNECLHILSVKHFWHGIHRTVLARLSHAPATPTYLYRFDVD
SPHFNHFRQVMCGKHVRGVSHADDLSYLFYHILANKVDKSSMEYQTIQRL
VGMWVAFARNDNPNCPQIGPTTWEALDEKGPQMCLNIGKQLEFIVLPESK
QNRIWDRLYDKNDLF*

BS08439.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:39:00
Subject Length Description Subject Range Query Range Score Percent Strand
alpha-Est1-PA 565 CG1031-PA 1..565 1..565 3039 100 Plus
CG6018-PA 566 CG6018-PA 1..566 1..565 1915 60.1 Plus
alpha-Est2-PB 566 CG2505-PB 1..566 1..565 1816 59.6 Plus
alpha-Est2-PA 566 CG2505-PA 1..566 1..565 1816 59.6 Plus
alpha-Est9-PC 569 CG1128-PC 8..568 9..564 1413 48 Plus