Clone Sequence Records
BS08444.3prime Sequence
924 bp (826 high quality bases) assembled on 2006-01-10
> BS08444.3prime
ATGGTCTAGAAAGCTTTCAGTATTGAAATTGATCGAAATTTCGGCGTCCG
CCGCCACGTCCGCCTCCAAAACGACCACCTCTTCCTCCAAAACCGCCACC
TTCAGCAGCGCGCTTGTCCTTCATGGCTTTAAAGCGTCTAGCCATGTTGT
GCAGTTCGTCGGGCACTTCCTGCTCCGCCTCCTGCAGTATCTCAATTAGT
TCCTTGGCCATAGCCCAATCCTCGCGCGTAAAAAAGCTTATTGATGTGCC
CTGTCGGCCAGCACGTCCGGTGCGACCAACACGGTGCACATACTCCTCGA
TGTTGTGCGGAAAATCATAGTTGATGACATGTGTGATATCCTCAATGTCC
AGGCCACGTGATGCCACATCGGTAGCAACCAGAATGCGCACGACGCCGGA
CTTAATATCGGCAATAGCCTGCTCACGATCCATCTGATCGCGATTACCAT
GAATGCACTGGGTCATGAAACCATCCAGCGTAAGTTCACTGGATAGGTCG
TCAGCACGAACCTTGCGTCCACAAAATATGATGATCTTGTCCGTACTGGA
CATGTTCTTAACGAAAGATGTAATGGTGTTGAATTTGTCCATGTCATCCT
CCATCAATTTAATAATTTGTTTCACCGAGTGCGTGGCTGCCAGATCGAGC
GATCCGACACACACCTGGATGGGATTCTTCATATAGCTCTGCGCTAAACG
ACGTACTCCTGGTGGCCAAGTGGCCGACGTCATTATGGTCTGACGGTCCG
GACGTATGTCTAGCATCACCTTCCGGATCTGCGGCTCGAAACCCATGTCC
AGCATGCGATCTGCCTCGTCAAGCACCAGATAAGTGATGGTGCTTACATC
AATGACATTTGGCCATATCAAATCGTTCAGGCGTCCCGGAGTGCAGATAA
TGATCTCCGCACCGCGCTCCAAGT
BS08444.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:07:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10777-PB | 2838 | CG10777-RB | 1161..1223 | 836..774 | 215 | 93.6 | Minus |
| CG10077-PA | 2457 | CG10077-RA | 919..975 | 832..776 | 160 | 91.2 | Minus |
| CG9748-PA | 2397 | bel-RA | 1378..1421 | 817..774 | 145 | 93.1 | Minus |
| CG6227-PA | 3675 | CG6227-RA | 1999..2040 | 820..779 | 135 | 92.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:42:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7878-RA | 2375 | CG7878-RA | 1333..2240 | 924..17 | 4495 | 99.8 | Minus |
| CG10777-RC | 6384 | CG10777-RC | 1683..1779 | 836..740 | 275 | 85.6 | Minus |
| CG10777-RB | 8365 | CG10777-RB | 1683..1779 | 836..740 | 275 | 85.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:42:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8124174..8124765 | 924..333 | 2900 | 99.3 | Minus |
| 3R | 32079331 | 3R | 8124823..8125138 | 332..17 | 1580 | 100 | Minus |
| X | 23542271 | X | 7929046..7929142 | 740..836 | 275 | 85.6 | Plus |
| 3L | 28110227 | 3L | 6954167..6954263 | 740..836 | 245 | 83.5 | Plus |
Blast to na_te.dros performed on 2015-02-11 23:42:53 has no hits.
BS08444.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:40:45 Download gff for
BS08444.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10777-PB | 1154..1232 | 765..844 | 86 | | Minus |
| CG10777-PB | 1629..1667 | 348..386 | 84 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed on 2007-05-10 10:39:56 has no hits.
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:36:48 Download gff for
BS08444.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7878-RA | 1333..2249 | 7..924 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:57:07 Download gff for
BS08444.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7878-RA | 1333..2249 | 7..924 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:57:07 Download gff for
BS08444.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8124174..8124765 | 333..924 | 99 | -> | Minus |
| 3R | 8124823..8125147 | 7..332 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:36:48 Download gff for
BS08444.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3949896..3950487 | 333..924 | 99 | -> | Minus |
| arm_3R | 3950545..3950869 | 7..332 | 98 | | Minus |
BS08444.5prime Sequence
866 bp (859 high quality bases) assembled on 2006-01-10
> BS08444.5prime
GAAGTTATCAGTCGACATGTCGGATCTCGATTGGGACGATCCAAACTATG
TCGAGAAGCCGGCGGTGCATCAGGAGTACTCCAAGCCGAATAATAAGTAC
GAAAGGAGTATCCGGCGAGATGGTAACTCACGTGCATACAAAGGAGATCG
AAATGACTACGGCGGAGAAGGACGAGGCTATCGCGCTAAACGCAATGATT
ATGGCGGTGGACGTCGCGACAATCGGGATAATTACGGAGCAGGGCATCGT
GATAGTCGCGACAGTGCCGGGGGAGGAGGAGGAGACTTTAGCGAATCCTT
GAGCATCGCTTCCGAGATGGTCGGAAAAGTTATTGGAAGAGGGGGCTCCA
ATATATCCCGGATCCAGAACGACTTCAATGTCCGCGTCAAATTGGACAAG
TGCGACTTAATAGTCAAGATAACTGGTAGCATCCAGAGCAACGTCATCGA
TGCTATCAATCACGTTCGCAAGCAGGTCACTAATTCGGGTGATAGGGGAC
AGGATCGCGATAATAGGGACCACGGTTCCAATGAAAGATATGACGGAGGC
GGATACGACAGATACAAGGGGAATAGCTACGAGTTCAATCCCACTTCTTC
TGAGTCCAATAAGGACAATGGGGATCTTACGGGCATCATTGATTGGGAAG
CCCTGAATAAAGCTTCGATAGCAGCTACTGCGGCACGGTGGTCCAAGTGT
CCACCGCTAACAAAGAACTTTTACAAGGAGGCTCCTGAAGTGGCCAATCT
GACAAAATCGGAGATTGAGCGCATTCGCGAGGAGAACAACAAGATAACAG
TTTCTTATGTTTTCGAGCCAAAGGAGGGGGAAACGTCACCGCCTATTCCA
AATCCAGTTTGGACCT
BS08444.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-06 18:07:04 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:45:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7878-RA | 2375 | CG7878-RA | 129..978 | 17..866 | 4250 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:45:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8122853..8123503 | 17..667 | 3255 | 100 | Plus |
| 3R | 32079331 | 3R | 8123558..8123757 | 667..866 | 1000 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 07:45:57 has no hits.
BS08444.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:49:54 Download gff for
BS08444.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7878-RA | 129..978 | 17..866 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:03:52 Download gff for
BS08444.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7878-RA | 129..978 | 17..866 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:03:52 Download gff for
BS08444.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8122853..8123503 | 17..667 | 100 | -> | Plus |
| 3R | 8123559..8123757 | 668..866 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:49:54 Download gff for
BS08444.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3948575..3949225 | 17..667 | 100 | -> | Plus |
| arm_3R | 3949281..3949479 | 668..866 | 100 | | Plus |
BS08444.complete Sequence
2144 bp assembled on 2008-08-14
GenBank Submission: FJ636159
> BS08444.complete
GAAGTTATCAGTCGACATGTCGGATCTCGATTGGGACGATCCAAACTATG
TCGAGAAGCCGGCGGTGCATCAGGAGTACTCCAAGCCGAATAATAAGTAC
GAAAGGAGTATCCGGCGAGATGGTAACTCACGTGCATACAAAGGAGATCG
AAATGACTACGGCGGAGAAGGACGAGGCTATCGCGCTAAACGCAATGATT
ATGGCGGTGGACGTCGCGACAATCGGGATAATTACGGAGCAGGGCATCGT
GATAGTCGCGACAGTGCCGGGGGAGGAGGAGGAGACTTTAGCGAATCCTT
GAGCATCGCTTCCGAGATGGTCGGAAAAGTTATTGGAAGAGGGGGCTCCA
ATATATCCCGGATCCAGAACGACTTCAATGTCCGCGTCAAATTGGACAAG
TGCGACTTAATAGTCAAGATAACTGGTAGCATCCAGAGCAACGTCATCGA
TGCTATCAATCACGTTCGCAAGCAGGTCACTAATTCGGGTGATAGGGGAC
AGGATCGCGATAATAGGGACCACGGTTCCAATGAAAGATATGACGGAGGC
GGATACGACAGATACAAGGGGAATAGCTACGAGTTCAATCCCACTTCTTC
TGAGTCCAATAAGGACAATGGGGATCTTACGGGCATCATTGATTGGGAAG
CCCTGAATAAAGCTTCGATAGCAGCTACTGCGGCACGGTGGTCCAAGTGT
CCACCGCTAACAAAGAACTTTTACAAGGAGGCTCCTGAAGTGGCCAATCT
GACAAAATCGGAGATTGAGCGCATTCGCGAGGAGAACAACAAGATAACAG
TTTCTTATGTTTTCGAGCCAAAGGAGGGGGAAACGTCACCGCCTATTCCA
AATCCAGTTTGGACCTTCGAGCAATGCTTTGCCGAATATCCAGATATGCT
TGAGGAGATTACCAAAATGGGCTTCTCCAAGCCCTCGCCCATCCAATCGC
AGGCGTGGCCCATTCTCCTCCAAGGTCATGACATGATCGGTATCGCCCAA
ACAGGCACTGGCAAAACACTAGCCTTCCTTTTGCCCGGAATGATTCACAC
CGAGTACCAGAGCACGCCCAGGGGCACGAGGGGCGGAGCTAACGTTCTGG
TGCTGGCACCCACTCGGGAGTTGGCTCTGCAAATCGAAATGGAGGTCAAG
AAGTACTCCTTTCGTGGCATGAAAGCGGTTTGCGTGTACGGCGGTGGCAA
TCGCAACATGCAGATATCCGACTTGGAGCGCGGTGCGGAGATCATTATCT
GCACTCCGGGACGCCTGAACGATTTGATAATGGCCAATGTCATTGATGTA
AGCACCATCACTTATCTGGTGCTTGACGAGGCAGATCGCATGCTGGACAT
GGGTTTCGAGCCGCAGATCCGGAAGGTGATGCTAGACATACGTCCGGACC
GTCAGACCATAATGACGTCGGCCACTTGGCCACCAGGAGTACGTCGTTTA
GCGCAGAGCTATATGAAGAATCCCATCCAGGTGTGTGTCGGATCGCTCGA
TCTGGCAGCCACGCACTCGGTGAAACAAATTATTAAATTGATGGAGGATG
ACATGGACAAATTCAACACCATTACATCTTTCGTTAAGAACATGTCCAGT
ACGGACAAGATCATCATATTTTGTGGACGCAAGGTTCGTGCTGACGACCT
ATCCAGTGAACTTACGCTGGATGGTTTCATGACCCAGTGCATTCATGGTA
ATCGCGATCAGATGGATCGTGAGCAGGCTATTGCCGATATTAAGTCCGGC
GTCGTGCGCATTCTGGTTGCTACCGATGTGGCATCACGTGGCCTGGACAT
TGAGGATATCACACATGTCATCAACTATGATTTTCCGCACAACATCGAGG
AGTATGTGCACCGTGTTGGTCGCACCGGACGTGCTGGCCGACAGGGCACA
TCAATAAGCTTTTTTACGCGCGAGGATTGGGCTATGGCCAAGGAACTAAT
TGAGATACTGCAGGAGGCGGAGCAGGAAGTGCCCGACGAACTGCACAACA
TGGCTAGACGCTTTAAAGCCATGAAGGACAAGCGCGCTGCTGAAGGTGGC
GGTTTTGGAGGAAGAGGTGGTCGTTTTGGAGGCGGACGTGGCGGCGGACG
CCGAAATTTCGATCAATTTCAATACTGAAAGCTTTCTAGACCAT
BS08444.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:03:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7878-RA | 2112 | CG7878-PA | 1..2112 | 17..2128 | 10560 | 100 | Plus |
| CG10777-RC | 2838 | CG10777-PC | 1161..1257 | 1309..1405 | 275 | 85.6 | Plus |
| CG10777-RB | 2838 | CG10777-PB | 1161..1257 | 1309..1405 | 275 | 85.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:03:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7878-RA | 2375 | CG7878-RA | 129..2240 | 17..2128 | 10560 | 100 | Plus |
| CG10777-RC | 6384 | CG10777-RC | 1683..1779 | 1309..1405 | 275 | 85.6 | Plus |
| CG10777-RB | 8365 | CG10777-RB | 1683..1779 | 1309..1405 | 275 | 85.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:03:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8122853..8123503 | 17..667 | 3255 | 100 | Plus |
| 3R | 32079331 | 3R | 8124130..8124765 | 1177..1812 | 3180 | 100 | Plus |
| 3R | 32079331 | 3R | 8123558..8124068 | 667..1177 | 2555 | 100 | Plus |
| 3R | 32079331 | 3R | 8124823..8125138 | 1813..2128 | 1580 | 100 | Plus |
| X | 23542271 | X | 7929046..7929142 | 1405..1309 | 275 | 85.6 | Minus |
| 3L | 28110227 | 3L | 6954167..6954263 | 1405..1309 | 245 | 83.5 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:03:49 has no hits.
BS08444.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:13:45 Download gff for
BS08444.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7878-RA | 155..2275 | 17..2138 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:48:15 Download gff for
BS08444.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7878-RA | 129..2239 | 17..2127 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:23:09 Download gff for
BS08444.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7878-RA | 155..2265 | 17..2127 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:10:13 Download gff for
BS08444.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7878-RA | 129..2239 | 17..2127 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:10:13 Download gff for
BS08444.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8122853..8123503 | 17..667 | 100 | -> | Plus |
| 3R | 8123559..8124067 | 668..1176 | 100 | -> | Plus |
| 3R | 8124130..8124765 | 1177..1812 | 100 | -> | Plus |
| 3R | 8124823..8125137 | 1813..2127 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:48:15 Download gff for
BS08444.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3948575..3949225 | 17..667 | 100 | -> | Plus |
| arm_3R | 3949281..3949789 | 668..1176 | 100 | -> | Plus |
| arm_3R | 3949852..3950487 | 1177..1812 | 100 | -> | Plus |
| arm_3R | 3950545..3950859 | 1813..2127 | 100 | | Plus |
BS08444.pep Sequence
Translation from 16 to 2127
> BS08444.pep
MSDLDWDDPNYVEKPAVHQEYSKPNNKYERSIRRDGNSRAYKGDRNDYGG
EGRGYRAKRNDYGGGRRDNRDNYGAGHRDSRDSAGGGGGDFSESLSIASE
MVGKVIGRGGSNISRIQNDFNVRVKLDKCDLIVKITGSIQSNVIDAINHV
RKQVTNSGDRGQDRDNRDHGSNERYDGGGYDRYKGNSYEFNPTSSESNKD
NGDLTGIIDWEALNKASIAATAARWSKCPPLTKNFYKEAPEVANLTKSEI
ERIREENNKITVSYVFEPKEGETSPPIPNPVWTFEQCFAEYPDMLEEITK
MGFSKPSPIQSQAWPILLQGHDMIGIAQTGTGKTLAFLLPGMIHTEYQST
PRGTRGGANVLVLAPTRELALQIEMEVKKYSFRGMKAVCVYGGGNRNMQI
SDLERGAEIIICTPGRLNDLIMANVIDVSTITYLVLDEADRMLDMGFEPQ
IRKVMLDIRPDRQTIMTSATWPPGVRRLAQSYMKNPIQVCVGSLDLAATH
SVKQIIKLMEDDMDKFNTITSFVKNMSSTDKIIIFCGRKVRADDLSSELT
LDGFMTQCIHGNRDQMDREQAIADIKSGVVRILVATDVASRGLDIEDITH
VINYDFPHNIEEYVHRVGRTGRAGRQGTSISFFTREDWAMAKELIEILQE
AEQEVPDELHNMARRFKAMKDKRAAEGGGFGGRGGRFGGGRGGGRRNFDQ
FQY*
BS08444.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:18:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7878-PA | 703 | CG7878-PA | 1..703 | 1..703 | 3699 | 100 | Plus |
| Rm62-PH | 575 | CG10279-PH | 18..546 | 158..690 | 1005 | 41.7 | Plus |
| Rm62-PD | 575 | CG10279-PD | 18..546 | 158..690 | 1005 | 41.7 | Plus |
| Rm62-PI | 578 | CG10279-PI | 21..549 | 158..690 | 1005 | 41.7 | Plus |
| Rm62-PF | 578 | CG10279-PF | 21..549 | 158..690 | 1005 | 41.7 | Plus |
