Clone Sequence Records
BS08448.3prime Sequence
657 bp (656 high quality bases) assembled on 2006-01-10
> BS08448.3prime
ATGGTCTAGAAAGCTTCTAGGTGGACTCAAAAGCGCGCTTAAGCATTTTG
GCTTGAATGCCGTTGTTATGGCGAAGTTGGTAATGGTGTTGGTGTTGAAT
TTGGCTTTGATGTTGATGTTGATGTGGATGGAGGCTCACGAGGACTCGCT
TGCGCTGGTGTGCGTTTGGGTATGTCTGTGTAAGTGACTGTATCTGTATC
TGTGAAGTCTGGGACCCGCTCCTCGATTTGGATCCCTGCTGCTGCTGCGG
ATTCTGCTGCTGCGGGGAGCGGGAACTGCGCTGCTGCGCTTGCTGCTGCT
TTTGCTGCTGCTCGACAGTTGGCTCCTTGGCATTTTCCGTGTCCGATTCG
ATGCGCATGCGCTGATTATCAGCTATTTTGACTGCCTCCCCCTCCTTTTC
CCATTTGGTTGCAATTTGCAAGGTCTCCGCTGTCTTTTGTTGTATGCTCT
TCGAGTCATCCAATAATGTCAATTCATAGAATTCTTGTATATCTAACAGC
GCTTGAAACAAGCGAGATTTAAATATGCGTATAACGCGTTCGATTGCAAT
ACGCAGCGCCCGATCCTGCGGCTCCGAAAGTCTCGCGTGGTAGTCCTCGA
GCAGCTCGAGAGCCCGATGAGCTTCTTGCTTTTTCACTGGCATGTCGACT
GATAACT
BS08448.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:07:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1725-PC | 627 | dlg1-RC | 1..627 | 643..17 | 3060 | 99.5 | Minus |
CG1725-PJ | 627 | dlg1-RJ | 1..627 | 643..17 | 3060 | 99.5 | Minus |
CG1725-PI | 627 | dlg1-RI | 1..627 | 643..17 | 3060 | 99.5 | Minus |
CG1725-PH | 2736 | dlg1-RH | 1..438 | 643..206 | 2115 | 99.3 | Minus |
CG1725-PB | 2913 | dlg1-RB | 1..276 | 643..368 | 1305 | 98.9 | Minus |
CG1725-PF | 2451 | dlg1-RF | 911..1167 | 624..368 | 1210 | 98.8 | Minus |
CG1725-PB | 2913 | dlg1-RB | 454..615 | 367..206 | 810 | 100 | Minus |
CG1725-PF | 2451 | dlg1-RF | 1345..1506 | 367..206 | 810 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 11:02:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dlg1-RI | 2114 | CG1725-RI | 371..997 | 643..17 | 3090 | 99.5 | Minus |
dlg1-RJ | 2102 | CG1725-RJ | 359..985 | 643..17 | 3090 | 99.5 | Minus |
dlg1-RC | 2554 | CG1725-RC | 811..1437 | 643..17 | 3090 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 11:02:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11387986..11388174 | 205..17 | 945 | 100 | Minus |
X | 23542271 | X | 11387772..11387933 | 367..206 | 810 | 100 | Minus |
X | 23542271 | X | 11376840..11376973 | 626..493 | 670 | 100 | Minus |
X | 23542271 | X | 11381854..11381980 | 494..368 | 590 | 97.6 | Minus |
Blast to na_te.dros performed 2015-02-06 11:02:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2285..2538 | 332..76 | 222 | 57.7 | Minus |
Doc3-element | 4740 | Doc3-element DOC3 4740bp | 549..634 | 130..46 | 130 | 62.8 | Minus |
rover | 7318 | rover ROVER 7318bp | 1930..1997 | 115..48 | 123 | 68.1 | Minus |
BS08448.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:40:52 Download gff for
BS08448.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1725-PC | 1..627 | 17..643 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:40:03 Download gff for
BS08448.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1725-PJ | 1..627 | 17..643 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:32:15 Download gff for
BS08448.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dlg1-RC | 804..1440 | 10..652 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:41:59 Download gff for
BS08448.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dlg1-RC | 804..1440 | 10..652 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:41:59 Download gff for
BS08448.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11387986..11388177 | 10..205 | 97 | | Minus |
X | 11376842..11376973 | 493..624 | 100 | -> | Minus |
X | 11381856..11381980 | 368..492 | 97 | -> | Minus |
X | 11387772..11387933 | 206..367 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:32:15 Download gff for
BS08448.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11275889..11276013 | 368..492 | 97 | -> | Minus |
arm_X | 11270875..11271006 | 493..624 | 100 | -> | Minus |
arm_X | 11281805..11281966 | 206..367 | 100 | -> | Minus |
arm_X | 11282019..11282210 | 10..205 | 97 | | Minus |
BS08448.5prime Sequence
657 bp (656 high quality bases) assembled on 2006-01-10
> BS08448.5prime
GAAGTTATCAGTCGACATGCCAGTGAAAAAGCAAGAAGCTCATCGGGCTC
TCGAGCTGCTCGAGGACTACCACGCGAGACTTTCGGAGCCGCAGGATCGG
GCGCTGCGTATTGCAATCGAACGCGTTATACGCATATTTAAATCTCGCTT
GTTTCAAGCGCTGTTAGATATACAAGAATTCTATGAATTGACATTATTGG
ATGACTCGAAGAGCATACAACAAAAGACAGCGGAGACCTTGCAAATTGCA
ACCAAATGGGAAAAGGATGGCCAGGCAGTCAAAATAGCTGATAATCAGCG
CATGCGCATCGAATCGGACACGGAAAATGCCAAGGAGCCAACTGTCGAGC
AGCAGCAAAAGCAGCAGCAAGCGCAGCAGCGCAGTTCCCGCTCCCCGCAG
CAGCAGAATCCGCAGCAGCAGCAGGGATCCAAATCGAGGAGCGGGTCCCA
GACTTCACAGATACAGATACAGTCACTTACACAGACATACCCAAACGCAC
ACCAGCGCAAGCGAGTCCTCGTGAGCCTCCATCCACATCAACATCAACAT
CAAAGCCAAATTCAACACCAACACCATTACCAACTTCGCCATAACAACGG
CATTCAAGCCAAAATGCTTAAGCGCGCTTTTGAGTCCACCTAGAAGCTTT
CTAGACC
BS08448.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:07:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1725-PC | 627 | dlg1-RC | 1..627 | 17..643 | 3135 | 100 | Plus |
CG1725-PJ | 627 | dlg1-RJ | 1..627 | 17..643 | 3135 | 100 | Plus |
CG1725-PI | 627 | dlg1-RI | 1..627 | 17..643 | 3135 | 100 | Plus |
CG1725-PH | 2736 | dlg1-RH | 1..438 | 17..454 | 2190 | 100 | Plus |
CG1725-PB | 2913 | dlg1-RB | 1..276 | 17..292 | 1380 | 100 | Plus |
CG1725-PF | 2451 | dlg1-RF | 911..1167 | 36..292 | 1285 | 100 | Plus |
CG1725-PB | 2913 | dlg1-RB | 454..615 | 293..454 | 810 | 100 | Plus |
CG1725-PF | 2451 | dlg1-RF | 1345..1506 | 293..454 | 810 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:41:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dlg1-RI | 2114 | CG1725-RI | 371..997 | 17..643 | 3135 | 100 | Plus |
dlg1-RJ | 2102 | CG1725-RJ | 359..985 | 17..643 | 3135 | 100 | Plus |
dlg1-RC | 2554 | CG1725-RC | 811..1437 | 17..643 | 3135 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:41:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11387986..11388174 | 455..643 | 945 | 100 | Plus |
X | 23542271 | X | 11387772..11387933 | 293..454 | 810 | 100 | Plus |
X | 23542271 | X | 11376840..11376973 | 34..167 | 670 | 100 | Plus |
X | 23542271 | X | 11381854..11381980 | 166..292 | 635 | 100 | Plus |
Blast to na_te.dros performed 2015-02-11 17:41:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2285..2538 | 328..584 | 222 | 57.7 | Plus |
Doc3-element | 4740 | Doc3-element DOC3 4740bp | 549..634 | 530..614 | 130 | 62.8 | Plus |
rover | 7318 | rover ROVER 7318bp | 1930..1997 | 545..612 | 123 | 68.1 | Plus |
BS08448.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:40:53 Download gff for
BS08448.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1725-PI | 1..627 | 17..643 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:40:05 Download gff for
BS08448.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1725-PJ | 1..627 | 17..643 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:20:02 Download gff for
BS08448.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dlg1-RC | 804..1440 | 8..650 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:15:35 Download gff for
BS08448.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dlg1-RC | 804..1440 | 8..650 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:15:35 Download gff for
BS08448.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11376842..11376973 | 36..167 | 100 | -> | Plus |
X | 11381856..11381980 | 168..292 | 100 | -> | Plus |
X | 11387772..11387933 | 293..454 | 100 | -> | Plus |
X | 11387986..11388177 | 455..650 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:20:02 Download gff for
BS08448.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11270875..11271006 | 36..167 | 100 | -> | Plus |
arm_X | 11275889..11276013 | 168..292 | 100 | -> | Plus |
arm_X | 11281805..11281966 | 293..454 | 100 | -> | Plus |
arm_X | 11282019..11282210 | 455..650 | 97 | | Plus |
BS08448.complete Sequence
659 bp (659 high quality bases) assembled on 2006-01-18
GenBank Submission: FJ636160
> BS08448.complete
GAAGTTATCAGTCGACATGCCAGTGAAAAAGCAAGAAGCTCATCGGGCTC
TCGAGCTGCTCGAGGACTACCACGCGAGACTTTCGGAGCCGCAGGATCGG
GCGCTGCGTATTGCAATCGAACGCGTTATACGCATATTTAAATCTCGCTT
GTTTCAAGCGCTGTTAGATATACAAGAATTCTATGAATTGACATTATTGG
ATGACTCGAAGAGCATACAACAAAAGACAGCGGAGACCTTGCAAATTGCA
ACCAAATGGGAAAAGGATGGCCAGGCAGTCAAAATAGCTGATAATCAGCG
CATGCGCATCGAATCGGACACGGAAAATGCCAAGGAGCCAACTGTCGAGC
AGCAGCAAAAGCAGCAGCAAGCGCAGCAGCGCAGTTCCCGCTCCCCGCAG
CAGCAGAATCCGCAGCAGCAGCAGGGATCCAAATCGAGGAGCGGGTCCCA
GACTTCACAGATACAGATACAGTCACTTACACAGACATACCCAAACGCAC
ACCAGCGCAAGCGAGTCCTCGTGAGCCTCCATCCACATCAACATCAACAT
CAAAGCCAAATTCAACACCAACACCATTACCAACTTCGCCATAACAACGG
CATTCAAGCCAAAATGCTTAAGCGCGCTTTTGAGTCCACCTAGAAGCTTT
CTAGACCAT
BS08448.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:53:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dlg1-RI | 627 | CG1725-PI | 1..627 | 17..643 | 3135 | 100 | Plus |
dlg1-RJ | 627 | CG1725-PJ | 1..627 | 17..643 | 3135 | 100 | Plus |
dlg1-RC | 627 | CG1725-PC | 1..627 | 17..643 | 3135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:53:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dlg1-RI | 2114 | CG1725-RI | 371..997 | 17..643 | 3135 | 100 | Plus |
dlg1-RJ | 2102 | CG1725-RJ | 359..985 | 17..643 | 3135 | 100 | Plus |
dlg1-RC | 2554 | CG1725-RC | 811..1437 | 17..643 | 3135 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:53:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11387986..11388174 | 455..643 | 945 | 100 | Plus |
X | 23542271 | X | 11387772..11387933 | 293..454 | 810 | 100 | Plus |
X | 23542271 | X | 11376840..11376973 | 34..167 | 670 | 100 | Plus |
X | 23542271 | X | 11381854..11381980 | 166..292 | 635 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 07:53:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2285..2538 | 328..584 | 222 | 57.7 | Plus |
Doc3-element | 4740 | Doc3-element DOC3 4740bp | 549..634 | 530..614 | 130 | 62.8 | Plus |
rover | 7318 | rover ROVER 7318bp | 1930..1997 | 545..612 | 123 | 68.1 | Plus |
BS08448.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:03:22 Download gff for
BS08448.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dlg1-RI | 1..627 | 17..643 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:38:02 Download gff for
BS08448.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dlg1-RI | 399..1025 | 17..643 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:12:28 Download gff for
BS08448.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dlg1-RC | 811..1437 | 17..643 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:03:22 Download gff for
BS08448.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dlg1-RI | 392..1028 | 8..650 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:06:19 Download gff for
BS08448.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dlg1-RC | 811..1437 | 17..643 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:06:19 Download gff for
BS08448.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11374492..11374510 | 17..35 | 100 | -> | Plus |
X | 11376842..11376973 | 36..167 | 100 | -> | Plus |
X | 11381856..11381980 | 168..292 | 100 | -> | Plus |
X | 11387772..11387933 | 293..454 | 100 | -> | Plus |
X | 11387986..11388174 | 455..643 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:12:28 Download gff for
BS08448.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11275889..11276013 | 168..292 | 100 | -> | Plus |
arm_X | 11281805..11281966 | 293..454 | 100 | -> | Plus |
arm_X | 11282019..11282207 | 455..643 | 100 | | Plus |
arm_X | 11268525..11268543 | 17..35 | 100 | -> | Plus |
arm_X | 11270875..11271006 | 36..167 | 100 | -> | Plus |
BS08448.pep Sequence
Translation from 16 to 642
> BS08448.pep
MPVKKQEAHRALELLEDYHARLSEPQDRALRIAIERVIRIFKSRLFQALL
DIQEFYELTLLDDSKSIQQKTAETLQIATKWEKDGQAVKIADNQRMRIES
DTENAKEPTVEQQQKQQQAQQRSSRSPQQQNPQQQQGSKSRSGSQTSQIQ
IQSLTQTYPNAHQRKRVLVSLHPHQHQHQSQIQHQHHYQLRHNNGIQAKM
LKRAFEST*
BS08448.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:20:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dlg1-PI | 208 | CG1725-PI | 1..208 | 1..208 | 1055 | 100 | Plus |
dlg1-PJ | 208 | CG1725-PJ | 1..208 | 1..208 | 1055 | 100 | Plus |
dlg1-PC | 208 | CG1725-PC | 1..208 | 1..208 | 1055 | 100 | Plus |
dlg1-PO | 206 | CG1725-PO | 1..206 | 1..208 | 1033 | 99 | Plus |
dlg1-PU | 198 | CG1725-PU | 1..198 | 1..208 | 989 | 95.2 | Plus |