Clone BS08449 Report

Search the DGRC for BS08449

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:84
Well:49
Vector:pDNR-Dual
Associated Gene/Transcriptmdy-RA
Protein status:BS08449.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08449.3prime Sequence

845 bp (786 high quality bases) assembled on 2006-01-10

> BS08449.3prime
ATGGTCTAGAAAGCTTCTAACTACTGTAGTCGGTGCCGTTGAGCGAGTTT
TTGAAATGCTGGACGACATAATCGTGATAATAGGCCATTATGCACAGAGG
CTGACCAAGAATAATGGAAGCCCACACGATTATATTGCCCATTCGGGGAC
CCAGTTTCTTTTCAATGGATTTGGATATGGCCGATAGGGGAATCTGACCC
ATCATGCCCATAAATGCCCAGATCTTGTATATTTGCAAAGGAACTGAAAC
CAAATATTCATGGAAGACGGCACTGAAAAGAAAGACAATAGTAGAGGCCT
GTCTTGAGGAATATCCCATTTGGACCACAGGGATGTAGAGATGACGCACG
CACCACCTATGAACTGGCATGTTCCATGTACGCCAGAAGGTGTCAATGTT
ATTCGCATTCCACCAATCACAATAAAAATTGCGATCTGCAAAATTCAGCA
GTTCGCCGACCGCATTAAGAAAAGAGTGGAACATTAGATAGAAAAAGCAG
AGCCAGCAAAGATGATTGGGTAGCGCAAGTTTAAGAAGTCGCTCAGTGGC
TAAGGCCACGTCCATATTGGAGAACGGAATCAGGGAGTTCCGAACCGATG
GAATGATCCATTGTTGAAACAAGGCCATAACCACATTCACTCCAATCACC
ACCTCCAATAAACGCTTCAGCAAAAAGCGTTTGCGCACGCGAGAAGTTCG
CGGGAAATTCAACTCATAGCAGAGAGTGGGCGCGCAAAGGAAGTACAGGA
GATCCTTGTATGTGAGATTATCAGGATATTGCACCAGCTTGGAAACGTCC
TCGTCTTCTTCACCTCCATTCAAAACTCCTTTTTTTAGTTCGGCC

BS08449.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:07:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG31991-PD 1848 mdy-RD 1024..1848 841..17 4125 100 Minus
CG31991-PA 1698 mdy-RA 874..1698 841..17 4125 100 Minus
CG31991-PB 1698 mdy-RB 874..1698 841..17 4125 100 Minus
CG31991-PC 1698 mdy-RC 874..1698 841..17 4125 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:19:12
Subject Length Description Subject Range Query Range Score Percent Strand
mdy-RE 2309 CG31991-RE 1233..2061 845..17 4130 99.9 Minus
mdy-RC 2337 CG31991-RC 1261..2089 845..17 4130 99.9 Minus
mdy-RB 2017 CG31991-RB 941..1769 845..17 4130 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:19:07
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16825779..16826089 834..524 1555 100 Minus
2L 23513712 2L 16826149..16826424 524..249 1380 100 Minus
2L 23513712 2L 16826482..16826716 251..17 1175 100 Minus
Blast to na_te.dros performed on 2015-02-10 23:19:09 has no hits.

BS08449.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:40:54 Download gff for BS08449.3prime
Subject Subject Range Query Range Percent Splice Strand
mdy-PB 870..1698 17..845 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:40:06 Download gff for BS08449.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31991-PC 870..1698 17..845 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:30:25 Download gff for BS08449.3prime
Subject Subject Range Query Range Percent Splice Strand
mdy-RA 1014..1847 9..845 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:32:50 Download gff for BS08449.3prime
Subject Subject Range Query Range Percent Splice Strand
mdy-RB 941..1774 9..845 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:32:50 Download gff for BS08449.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 16825779..16826089 524..834 100 -> Minus
2L 16826150..16826422 251..523 100 -> Minus
2L 16826483..16826716 17..250 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:30:25 Download gff for BS08449.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16825779..16826089 524..834 100 -> Minus
arm_2L 16826150..16826422 251..523 100 -> Minus
arm_2L 16826483..16826716 17..250 100 -> Minus

BS08449.5prime Sequence

875 bp (792 high quality bases) assembled on 2006-01-10

> BS08449.5prime
GAAGTTATCAGTCGACATGACCACCAATAAGGATCCCCAAGATAAGGAGC
CCGGGAAAGCAGAACAACCGACCAAGAATAGCGGATCCAGCGGTGTGGGT
ATCATGAAGCGCTTGAGAAGATCGGCGTCCGCCACAGAGCATAATCTTAG
CAGTCTGCGAAACCGCAAGTCAACACAAAATCTATTCGATCAGCACGGGA
ATCCCATAGATCTGCGACAGTATCGTAAAGTTTTGGATAAGGATGAAAAT
GGTAATGGAACCAACGGATCCGAGAAGAAGCTTAGATACAGGAGAACACA
AAGTGTGACTCGTGCTGAGGAGATTTCCAATAAAGAGGAGAAGCAGAGAA
GAGCTCAGCCTGGCAGACCAATCCATCGGCCAAGAGATTCTCTGTTTTCT
TGGAGCTCTGGATTTACCAATTTTTCTGGACTGGTGAACTGGGGATTTCT
ACTGCTCTGCATTGGAGGTCTGCGTTTGGGCTTGGAGAATCTCCTAAAGT
ATGGCATTCGCATCAATCCACTGGATTGGTTCTTCTTCATAAGCGGACAC
AACGAAGGCGAAGGACATAACGCCCTAATCCTGAGCATTTACTCTTTAGT
GCATATCTCGCTCTGTTTGGCTGTGGAGAAGGGTCTAGCCATGGAAATAA
TTGCAGAGGGCTTGGGCTTGTTCATCCAGATAGTGAACATTGTTGTCTTG
GTTTGCCTACCGGTGGTAACAATTCACCTAAAAGGACATGCTTTTAGTTT
GATGGGCGCTTCAACAGTTTGCTTCTTTTACTCTGTGTTGTTCCTAAACT
ATGGTCCTATGTGCAGACGAATATGTGGTGCCGTCAGACTTATTATCAAA
AGAATCCGCGGGAGCGGCGACCAAG

BS08449.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:07:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG31991-PD 1848 mdy-RD 150..932 16..798 3915 100 Plus
CG31991-PA 1698 mdy-RA 1..782 17..798 3910 100 Plus
CG31991-PB 1698 mdy-RB 1..782 17..798 3910 100 Plus
CG31991-PC 1698 mdy-RC 1..782 17..798 3910 100 Plus
CG31991-PD 1848 mdy-RD 931..1010 796..875 375 98.7 Plus
CG31991-PA 1698 mdy-RA 781..860 796..875 375 98.7 Plus
CG31991-PB 1698 mdy-RB 781..860 796..875 375 98.7 Plus
CG31991-PC 1698 mdy-RC 781..860 796..875 375 98.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:01:25
Subject Length Description Subject Range Query Range Score Percent Strand
mdy-RE 2309 CG31991-RE 363..1223 16..875 4265 99.8 Plus
mdy-RC 2337 CG31991-RC 391..1251 16..875 4265 99.8 Plus
mdy-RB 2017 CG31991-RB 71..931 16..875 4265 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:01:22
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16820122..16820475 16..369 1770 100 Plus
2L 23513712 2L 16820531..16820662 370..501 660 100 Plus
2L 23513712 2L 16825579..16825702 753..875 555 98.4 Plus
2L 23513712 2L 16825409..16825518 643..752 550 100 Plus
2L 23513712 2L 16820718..16820809 499..590 460 100 Plus
2L 23513712 2L 16820878..16820931 591..644 270 100 Plus
Blast to na_te.dros performed on 2015-02-10 20:01:24 has no hits.

BS08449.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:40:55 Download gff for BS08449.5prime
Subject Subject Range Query Range Percent Splice Strand
mdy-PD 144..1010 9..875 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:40:07 Download gff for BS08449.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31991-PD 144..1010 9..875 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:27:07 Download gff for BS08449.5prime
Subject Subject Range Query Range Percent Splice Strand
mdy-RA 138..1004 9..875 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:35:51 Download gff for BS08449.5prime
Subject Subject Range Query Range Percent Splice Strand
mdy-RB 65..931 9..875 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:35:51 Download gff for BS08449.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 16820116..16820475 9..369 99 -> Plus
2L 16820531..16820659 370..498 100 -> Plus
2L 16820718..16820809 499..590 100 -> Plus
2L 16820878..16820930 591..643 100 -> Plus
2L 16825410..16825518 644..752 100 -> Plus
2L 16825579..16825702 753..875 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:27:07 Download gff for BS08449.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16820116..16820475 9..369 99 -> Plus
arm_2L 16820531..16820659 370..498 100 -> Plus
arm_2L 16820718..16820809 499..590 100 -> Plus
arm_2L 16820878..16820930 591..643 100 -> Plus
arm_2L 16825410..16825518 644..752 100 -> Plus
arm_2L 16825579..16825702 753..875 98   Plus

BS08449.complete Sequence

1730 bp assembled on 2008-01-03

GenBank Submission: FJ636161

> BS08449.complete
GAAGTTATCAGTCGACATGACCACCAATAAGGATCCCCAAGATAAGGAGC
CCGGGAAAGCAGAACAACCGACCAAGAATAGCGGATCCAGCGGTGTGGGT
ATCATGAAGCGCTTGAGAAGATCGGCGTCCGCCACAGAGCATAATCTTAG
CAGTCTGCGAAACCGCAAGTCAACACAAAATCTATTCGATCAGCACGGGA
ATCCCATAGATCTGCGACAGTATCGTAAAGTTTTGGATAAGGATGAAAAT
GGTAATGGAACCAACGGATCCGAGAAGAAGCTTAGATACAGGAGAACACA
AAGTGTGACTCGTGCTGAGGAGATTTCCAATAAAGAGGAGAAGCAGAGAA
GAGCTCAGCCTGGCAGACCAATCCATCGGCCAAGAGATTCTCTGTTTTCT
TGGAGCTCTGGATTTACCAATTTTTCTGGACTGGTGAACTGGGGATTTCT
ACTGCTCTGCATTGGAGGTCTGCGTTTGGGCTTGGAGAATCTCCTAAAGT
ATGGCATTCGCATCAATCCACTGGATTGGTTCTTCTTCATAAGCGGACAC
AACGAAGGCGAAGGACATAACGCCCTAATCCTGAGCATTTACTCTTTAGT
GCATATCTCGCTCTGTTTGGCTGTGGAGAAGGGTCTAGCCATGGAAATAA
TTGCAGAGGGCTTGGGCTTGTTCATCCAGATAGTGAACATTGTTGTCTTG
GTTTGCCTACCGGTGGTAACAATTCACCTAAAAGGACATGCTTTTAGTTT
GATGGGCGCTTCAACAGTTTGCTTCTTTTACTCTGTGTTGTTCCTAAAAC
TATGGTCCTATGTGCAGACGAATATGTGGTGCCGTCAGACTTATTATCAA
AAGAATCCGCGGGAGCGTCGACCAAGCATAACTTTGGCGGAACTAAAAAA
AGGAGTTTTGAATGGAGGTGAAGAAGACGAGGACGTTTCCAAGCTGGTGC
AATATCCTGATAATCTCACATACAAGGATCTCCTGTACTTCCTTTGCGCG
CCCACTCTCTGCTATGAGTTGAATTTCCCGCGAACTTCTCGCGTGCGCAA
ACGCTTTTTGCTGAAGCGTTTATTGGAGGTGGTGATTGGAGTGAATGTGG
TTATGGCCTTGTTTCAACAATGGATCATTCCATCGGTTCGGAACTCCCTG
ATTCCGTTCTCCAATATGGACGTGGCCTTAGCCACTGAGCGACTTCTTAA
ACTTGCGCTACCCAATCATCTTTGCTGGCTCTGCTTTTTCTATCTAATGT
TCCACTCTTTTCTTAATGCGGTCGGCGAACTGCTGAATTTTGCAGATCGC
AATTTTTATTGTGATTGGTGGAATGCGAATAACATTGACACCTTCTGGCG
TACATGGAACATGCCAGTTCATAGGTGGTGCGTGCGTCATCTCTACATCC
CTGTGGTCCAAATGGGATATTCCTCAAGACAGGCCTCTACTATTGTCTTT
CTTTTCAGTGCCGTCTTCCATGAATATTTGGTTTCAGTTCCTTTGCAAAT
ATACAAGATCTGGGCATTTATGGGCATGATGGGTCAGATTCCCCTATCGG
CCATATCCAAATCCATTGAAAAGAAACTGGGTCCCCGAATGGGCAATATA
ATCGTGTGGGCTTCCATTATTCTTGGTCAGCCTCTGTGCATAATGGCCTA
TTATCACGATTATGTCGTCCAGCATTTCAAAAACTCGCTCAACGGCACCG
ACTACAGTAGTTAGAAGCTTTCTAGACCAT

BS08449.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:45:46
Subject Length Description Subject Range Query Range Score Percent Strand
mdy-RE 1698 CG31991-PE 1..1698 17..1714 8490 100 Plus
mdy-RC 1698 CG31991-PC 1..1698 17..1714 8490 100 Plus
mdy-RB 1698 CG31991-PB 1..1698 17..1714 8490 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:45:47
Subject Length Description Subject Range Query Range Score Percent Strand
mdy-RE 2309 CG31991-RE 363..2061 16..1714 8495 100 Plus
mdy-RC 2337 CG31991-RC 391..2089 16..1714 8495 100 Plus
mdy-RB 2017 CG31991-RB 71..1769 16..1714 8495 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:45:44
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16820122..16820475 16..369 1770 100 Plus
2L 23513712 2L 16825779..16826089 897..1207 1555 100 Plus
2L 23513712 2L 16826149..16826424 1207..1482 1380 100 Plus
2L 23513712 2L 16826482..16826716 1480..1714 1175 100 Plus
2L 23513712 2L 16825579..16825722 753..896 720 100 Plus
2L 23513712 2L 16820531..16820662 370..501 660 100 Plus
2L 23513712 2L 16825409..16825518 643..752 550 100 Plus
2L 23513712 2L 16820718..16820809 499..590 460 100 Plus
2L 23513712 2L 16820878..16820931 591..644 270 100 Plus
Blast to na_te.dros performed on 2014-11-27 12:45:45 has no hits.

BS08449.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:09:17 Download gff for BS08449.complete
Subject Subject Range Query Range Percent Splice Strand
mdy-RD 144..1848 9..1714 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:32:05 Download gff for BS08449.complete
Subject Subject Range Query Range Percent Splice Strand
mdy-RB 67..1764 17..1714 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:33:02 Download gff for BS08449.complete
Subject Subject Range Query Range Percent Splice Strand
mdy-RA 145..1842 17..1714 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:09:17 Download gff for BS08449.complete
Subject Subject Range Query Range Percent Splice Strand
mdy-RB 60..1769 9..1722 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:03:59 Download gff for BS08449.complete
Subject Subject Range Query Range Percent Splice Strand
mdy-RB 72..1769 17..1714 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:03:59 Download gff for BS08449.complete
Subject Subject Range Query Range Percent Splice Strand
2L 16826483..16826716 1481..1714 100   Plus
2L 16825579..16825722 753..896 100 -> Plus
2L 16825779..16826089 897..1207 100 -> Plus
2L 16820123..16820475 17..369 100 -> Plus
2L 16826150..16826422 1208..1480 100 -> Plus
2L 16820531..16820659 370..498 100 -> Plus
2L 16820718..16820809 499..590 100 -> Plus
2L 16820878..16820930 591..643 100 -> Plus
2L 16825410..16825518 644..752 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:33:02 Download gff for BS08449.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16820531..16820659 370..498 100 -> Plus
arm_2L 16820718..16820809 499..590 100 -> Plus
arm_2L 16820878..16820930 591..643 100 -> Plus
arm_2L 16825410..16825518 644..752 100 -> Plus
arm_2L 16825579..16825722 753..896 100 -> Plus
arm_2L 16820123..16820475 17..369 100 -> Plus
arm_2L 16825779..16826089 897..1207 100 -> Plus
arm_2L 16826150..16826422 1208..1480 100 -> Plus
arm_2L 16826483..16826716 1481..1714 100   Plus

BS08449.pep Sequence

Translation from 16 to 1713

> BS08449.pep
MTTNKDPQDKEPGKAEQPTKNSGSSGVGIMKRLRRSASATEHNLSSLRNR
KSTQNLFDQHGNPIDLRQYRKVLDKDENGNGTNGSEKKLRYRRTQSVTRA
EEISNKEEKQRRAQPGRPIHRPRDSLFSWSSGFTNFSGLVNWGFLLLCIG
GLRLGLENLLKYGIRINPLDWFFFISGHNEGEGHNALILSIYSLVHISLC
LAVEKGLAMEIIAEGLGLFIQIVNIVVLVCLPVVTIHLKGHAFSLMGAST
VCFFYSVLFLKLWSYVQTNMWCRQTYYQKNPRERRPSITLAELKKGVLNG
GEEDEDVSKLVQYPDNLTYKDLLYFLCAPTLCYELNFPRTSRVRKRFLLK
RLLEVVIGVNVVMALFQQWIIPSVRNSLIPFSNMDVALATERLLKLALPN
HLCWLCFFYLMFHSFLNAVGELLNFADRNFYCDWWNANNIDTFWRTWNMP
VHRWCVRHLYIPVVQMGYSSRQASTIVFLFSAVFHEYLVSVPLQIYKIWA
FMGMMGQIPLSAISKSIEKKLGPRMGNIIVWASIILGQPLCIMAYYHDYV
VQHFKNSLNGTDYSS*

BS08449.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:38:58
Subject Length Description Subject Range Query Range Score Percent Strand
mdy-PE 565 CG31991-PE 1..565 1..565 3001 100 Plus
mdy-PC 565 CG31991-PC 1..565 1..565 3001 100 Plus
mdy-PB 565 CG31991-PB 1..565 1..565 3001 100 Plus
mdy-PA 565 CG31991-PA 1..565 1..565 3001 100 Plus
CG8112-PB 559 CG8112-PB 281..529 297..545 350 35.8 Plus