Clone Sequence Records
BS08450.3prime Sequence
906 bp (793 high quality bases) assembled on 2006-01-10
> BS08450.3prime
ATGGTCTAGAAAGCTTCTATCTGGGTCCTTCGGCTACGGCGACGGGCAGG
ACATTACCAAGACTGCTAGCAGAATGCTTTATCGCACTGTACGTGGACTC
CTTTTTGTTCTCCTCACCGGCGGGTTTGCTGAAATACCATTCCTTCTTAT
TGGTCAGAAATAGCAGCATCAGGGCGGGCAGGTGTATCAGTGAAAATCGG
AACAGCTTCCGCGAGCTCCCACTATCTGACTTTTCATGAAACTTGTACGC
AAGGTAGGCGAAGTACGCGTTCAGAGGTAGTGTTTCCAAGGCAAACCAGT
AGTTCGTGACGTCCAGTACGGGTGCCATGGCTGAAAGTCCGACAATAGCC
ACCGAATATCGCAGCGCAGTGCGGCGACAAAGACCCGGATTGGTAACGGC
CATCATTCGGTAGCCGGCACGTGAATAATCCGGCCGGAGGTTCCACGACA
GAGCGTTGAAGTGCGGGAACTGCCACGCGTACAGCACTCCGGCTAGGATC
ATGGCGCCGGCGTCCAGGGTGGCTGCACAACCAGCCCATCCCATCAGCGG
AGGAATGGCGCCCACTATCGATCCCACCCAGGTATTGACTATGCTGATAC
GCTTCATCGGTGTGTATATCGTGGTGTAGAGGAACAGGTTACCCGCTCCC
AGCGCCGCCGTCAATCCATTTACTCCGAAATACAGCATACTTAAGCCGGC
AGTTGCCGACACCGCGGCGAAGGTAACTGCATGCAGTGGTGTCATTTGCC
CCGTGACGAGCACCCGGTTCTTTGTCCTCGACATCTGCGAATCGAAAGGA
ACTTCGTGATACTGATTTATGGCATTCGCCGCAGCCGAAACGAGTCCTGT
GCCCAGGGTGCACATCGCAAACGTTGTGGGATCGAAAGCAGCTGGCGCCA
TGGCAT
BS08450.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:07:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5037-PA | 1176 | CG5037-RA | 287..1176 | 906..17 | 4425 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:13:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5037-RA | 1473 | CG5037-RA | 426..1317 | 906..15 | 4445 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:13:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10332018..10332674 | 906..250 | 3270 | 99.8 | Minus |
2L | 23513712 | 2L | 10332738..10332973 | 250..15 | 1180 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 19:13:36 has no hits.
BS08450.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:40:56 Download gff for
BS08450.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5037-PA | 287..1176 | 17..906 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:40:09 Download gff for
BS08450.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5037-PA | 287..1176 | 17..906 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:00:40 Download gff for
BS08450.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5037-RA | 426..1323 | 7..906 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:32:57 Download gff for
BS08450.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5037-RA | 426..1323 | 7..906 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:32:57 Download gff for
BS08450.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10332018..10332674 | 250..906 | 99 | -> | Minus |
2L | 10332739..10332979 | 7..249 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:00:40 Download gff for
BS08450.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10332018..10332674 | 250..906 | 99 | -> | Minus |
arm_2L | 10332739..10332979 | 7..249 | 98 | | Minus |
BS08450.5prime Sequence
914 bp (805 high quality bases) assembled on 2006-01-10
> BS08450.5prime
GAAGTTATCAGTCGACATGATATTATTCAAAGGAATTCGGCGGGTGCAAT
CCCAGCTAAGAACGCCGGTTGATTTGGTGCTCATTCGGTACTCCACTGCA
GCAACGATAGCTTCCCAAGATGACAAAGGTGTCACTACAGCGTCGCCAGT
ATCCCAGGCGGGAAAGGTCCAGCATTTACCCGATAGTCAAATTACCTGGA
TGCCTAGTCCGTACACCATGCCCGGAAAAACTCTTAGCCAGTACAAGAAG
CTATCCAAGTTCCGGCTGACATCGCTGGTGGTCATTACAACGATGGGCGG
CTATGCCATGGCGCCAGCTGCTTTCGATCCCACAACGTTTGCGATGTGCA
CCCTGGGCACAGGACTCGTTTCGGCTGCGGCGAATGCCATTAATCAGTAT
CACGAAGTTCCTTTCGATTCGCAGATGTCGAGGACAAAGAACCGGGTGCT
CGTCACGGGGCAAATGACACCACTGCATGCAGTTACCTTCGCCGCGGTGT
CGGCAACTGCCGGCTTAAGTATGCTGTATTTCGGAGTAAATGGATTGACG
GCGGCGCTGGGAGCGGGTAACCTGTTCCTCTACACCACGATATACACACC
GATGAAGCGTATCAGCATAGTCAATACCTGGGTGGGATCGATAGTGGGCG
CCATTCCTCCGCTGATGGGATGGGCTGGTTGTGCAGCCACCCTGGACGCC
GGCGCCATGATCCTAGCCGGAGTGCTGTACGCGTGGCAGTTCCCGCACTT
CAACGCTCTGTCGTGGAACCTCCGGCCGGATTATTCACGTGCCGGCTACC
GAATGATGGCCGTTACCAATCCGGGTCTTTGTCGCCGCACTGCGCTGCGA
TATTCGGTGGCTATTGTCGGACTTTCAGCCATGGCACCCGTACTGGACGT
CACGAACTACTGGT
BS08450.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:07:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5037-PA | 1176 | CG5037-RA | 1..898 | 17..914 | 4490 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 10:00:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5037-RA | 1473 | CG5037-RA | 140..1037 | 17..914 | 4490 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 10:00:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10331988..10332629 | 273..914 | 3210 | 100 | Plus |
2L | 23513712 | 2L | 10331742..10331930 | 84..272 | 930 | 99.5 | Plus |
2L | 23513712 | 2L | 10331610..10331681 | 17..88 | 360 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 10:00:06 has no hits.
BS08450.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:40:57 Download gff for
BS08450.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5037-PA | 1..898 | 17..914 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:40:10 Download gff for
BS08450.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5037-PA | 1..898 | 17..914 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:25:33 Download gff for
BS08450.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5037-RA | 140..1037 | 17..914 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:54:38 Download gff for
BS08450.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5037-RA | 140..1037 | 17..914 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:54:38 Download gff for
BS08450.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10331610..10331681 | 17..88 | 100 | -> | Plus |
2L | 10331747..10331930 | 89..272 | 100 | -> | Plus |
2L | 10331988..10332629 | 273..914 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:25:33 Download gff for
BS08450.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10331610..10331681 | 17..88 | 100 | -> | Plus |
arm_2L | 10331747..10331930 | 89..272 | 100 | -> | Plus |
arm_2L | 10331988..10332629 | 273..914 | 100 | | Plus |
BS08450.complete Sequence
1208 bp (1208 high quality bases) assembled on 2006-01-18
GenBank Submission: FJ636162
> BS08450.complete
GAAGTTATCAGTCGACATGATATTATTCAAAGGAATTCGGCGGGTGCAAT
CCCAGCTAAGAACGCCGGTTGATTTGGTGCTCATTCGGTACTCCACTGCA
GCAACGATAGCTTCCCAAGATGACAAAGGTGTCACTACAGCGTCGCCAGT
ATCCCAGGCGGGAAAGGTCCAGCATTTACCCGATAGTCAAATTACCTGGA
TGCCTAGTCCGTACACCATGCCCGGAAAAACTCTTAGCCAGTACAAGAAG
CTATCCAAGTTCCGGCTGACATCGCTGGTGGTCATTACAACGATGGGCGG
CTATGCCATGGCGCCAGCTGCTTTCGATCCCACAACGTTTGCGATGTGCA
CCCTGGGCACAGGACTCGTTTCGGCTGCGGCGAATGCCATTAATCAGTAT
CACGAAGTTCCTTTCGATTCGCAGATGTCGAGGACAAAGAACCGGGTGCT
CGTCACGGGGCAAATGACACCACTGCATGCAGTTACCTTCGCCGCGGTGT
CGGCAACTGCCGGCTTAAGTATGCTGTATTTCGGAGTAAATGGATTGACG
GCGGCGCTGGGAGCGGGTAACCTGTTCCTCTACACCACGATATACACACC
GATGAAGCGTATCAGCATAGTCAATACCTGGGTGGGATCGATAGTGGGCG
CCATTCCTCCGCTGATGGGATGGGCTGGTTGTGCAGCCACCCTGGACGCC
GGCGCCATGATCCTAGCCGGAGTGCTGTACGCGTGGCAGTTCCCGCACTT
CAACGCTCTGTCGTGGAACCTCCGGCCGGATTATTCACGTGCCGGCTACC
GAATGATGGCCGTTACCAATCCGGGTCTTTGTCGCCGCACTGCGCTGCGA
TATTCGGTGGCTATTGTCGGACTTTCAGCCATGGCACCCGTACTGGACGT
CACGAACTACTGGTTTGCCTTGGAAACACTACCTCTGAACGCGTACTTCG
CCTACCTTGCGTACAAGTTTCATGAAAAGTCAGATAGTGGGAGCTCGCGG
AAGCTGTTCCGATTTTCACTGATACACCTGCCCGCCCTGATGCTGCTATT
TCTGACCAATAAGAAGGAATGGTATTTCAGCAAACCCGCCGGTGAGGAGA
ACAAAAAGGAGTCCACGTACAGTGCGATAAAGCATTCTGCTAGCAGTCTT
GGTAATGTCCTGCCCGTCGCCGTAGCCGAAGGACCCAGATAGAAGCTTTC
TAGACCAT
BS08450.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:31:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5037-RA | 1176 | CG5037-PA | 1..1176 | 17..1192 | 5880 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:31:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5037-RA | 1473 | CG5037-RA | 140..1317 | 17..1194 | 5890 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:31:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10331988..10332674 | 273..959 | 3435 | 100 | Plus |
2L | 23513712 | 2L | 10332738..10332973 | 959..1194 | 1180 | 100 | Plus |
2L | 23513712 | 2L | 10331742..10331930 | 84..272 | 930 | 99.5 | Plus |
2L | 23513712 | 2L | 10331610..10331681 | 17..88 | 360 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:31:22 has no hits.
BS08450.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:03:23 Download gff for
BS08450.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5037-RA | 1..1176 | 17..1192 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:41:23 Download gff for
BS08450.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5037-RA | 148..1331 | 17..1202 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:26:13 Download gff for
BS08450.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5037-RA | 140..1315 | 17..1192 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:03:23 Download gff for
BS08450.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5037-RA | 148..1331 | 17..1202 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:33:19 Download gff for
BS08450.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5037-RA | 140..1315 | 17..1192 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:33:19 Download gff for
BS08450.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10331610..10331681 | 17..88 | 100 | -> | Plus |
2L | 10331747..10331930 | 89..272 | 100 | -> | Plus |
2L | 10331988..10332674 | 273..959 | 100 | -> | Plus |
2L | 10332739..10332971 | 960..1192 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:26:13 Download gff for
BS08450.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10331610..10331681 | 17..88 | 100 | -> | Plus |
arm_2L | 10331747..10331930 | 89..272 | 100 | -> | Plus |
arm_2L | 10331988..10332674 | 273..959 | 100 | -> | Plus |
arm_2L | 10332739..10332971 | 960..1192 | 100 | | Plus |
BS08450.pep Sequence
Translation from 16 to 1191
> BS08450.pep
MILFKGIRRVQSQLRTPVDLVLIRYSTAATIASQDDKGVTTASPVSQAGK
VQHLPDSQITWMPSPYTMPGKTLSQYKKLSKFRLTSLVVITTMGGYAMAP
AAFDPTTFAMCTLGTGLVSAAANAINQYHEVPFDSQMSRTKNRVLVTGQM
TPLHAVTFAAVSATAGLSMLYFGVNGLTAALGAGNLFLYTTIYTPMKRIS
IVNTWVGSIVGAIPPLMGWAGCAATLDAGAMILAGVLYAWQFPHFNALSW
NLRPDYSRAGYRMMAVTNPGLCRRTALRYSVAIVGLSAMAPVLDVTNYWF
ALETLPLNAYFAYLAYKFHEKSDSGSSRKLFRFSLIHLPALMLLFLTNKK
EWYFSKPAGEENKKESTYSAIKHSASSLGNVLPVAVAEGPR*
BS08450.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:20:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5037-PA | 391 | CG5037-PA | 1..391 | 1..391 | 2014 | 100 | Plus |