Clone BS08450 Report

Search the DGRC for BS08450

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:84
Well:50
Vector:pDNR-Dual
Associated Gene/TranscriptCG5037-RA
Protein status:BS08450.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08450.3prime Sequence

906 bp (793 high quality bases) assembled on 2006-01-10

> BS08450.3prime
ATGGTCTAGAAAGCTTCTATCTGGGTCCTTCGGCTACGGCGACGGGCAGG
ACATTACCAAGACTGCTAGCAGAATGCTTTATCGCACTGTACGTGGACTC
CTTTTTGTTCTCCTCACCGGCGGGTTTGCTGAAATACCATTCCTTCTTAT
TGGTCAGAAATAGCAGCATCAGGGCGGGCAGGTGTATCAGTGAAAATCGG
AACAGCTTCCGCGAGCTCCCACTATCTGACTTTTCATGAAACTTGTACGC
AAGGTAGGCGAAGTACGCGTTCAGAGGTAGTGTTTCCAAGGCAAACCAGT
AGTTCGTGACGTCCAGTACGGGTGCCATGGCTGAAAGTCCGACAATAGCC
ACCGAATATCGCAGCGCAGTGCGGCGACAAAGACCCGGATTGGTAACGGC
CATCATTCGGTAGCCGGCACGTGAATAATCCGGCCGGAGGTTCCACGACA
GAGCGTTGAAGTGCGGGAACTGCCACGCGTACAGCACTCCGGCTAGGATC
ATGGCGCCGGCGTCCAGGGTGGCTGCACAACCAGCCCATCCCATCAGCGG
AGGAATGGCGCCCACTATCGATCCCACCCAGGTATTGACTATGCTGATAC
GCTTCATCGGTGTGTATATCGTGGTGTAGAGGAACAGGTTACCCGCTCCC
AGCGCCGCCGTCAATCCATTTACTCCGAAATACAGCATACTTAAGCCGGC
AGTTGCCGACACCGCGGCGAAGGTAACTGCATGCAGTGGTGTCATTTGCC
CCGTGACGAGCACCCGGTTCTTTGTCCTCGACATCTGCGAATCGAAAGGA
ACTTCGTGATACTGATTTATGGCATTCGCCGCAGCCGAAACGAGTCCTGT
GCCCAGGGTGCACATCGCAAACGTTGTGGGATCGAAAGCAGCTGGCGCCA
TGGCAT

BS08450.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:07:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG5037-PA 1176 CG5037-RA 287..1176 906..17 4425 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:13:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG5037-RA 1473 CG5037-RA 426..1317 906..15 4445 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:13:35
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10332018..10332674 906..250 3270 99.8 Minus
2L 23513712 2L 10332738..10332973 250..15 1180 100 Minus
Blast to na_te.dros performed on 2015-02-10 19:13:36 has no hits.

BS08450.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:40:56 Download gff for BS08450.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5037-PA 287..1176 17..906 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:40:09 Download gff for BS08450.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5037-PA 287..1176 17..906 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:00:40 Download gff for BS08450.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5037-RA 426..1323 7..906 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:32:57 Download gff for BS08450.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5037-RA 426..1323 7..906 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:32:57 Download gff for BS08450.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 10332018..10332674 250..906 99 -> Minus
2L 10332739..10332979 7..249 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:00:40 Download gff for BS08450.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10332018..10332674 250..906 99 -> Minus
arm_2L 10332739..10332979 7..249 98   Minus

BS08450.5prime Sequence

914 bp (805 high quality bases) assembled on 2006-01-10

> BS08450.5prime
GAAGTTATCAGTCGACATGATATTATTCAAAGGAATTCGGCGGGTGCAAT
CCCAGCTAAGAACGCCGGTTGATTTGGTGCTCATTCGGTACTCCACTGCA
GCAACGATAGCTTCCCAAGATGACAAAGGTGTCACTACAGCGTCGCCAGT
ATCCCAGGCGGGAAAGGTCCAGCATTTACCCGATAGTCAAATTACCTGGA
TGCCTAGTCCGTACACCATGCCCGGAAAAACTCTTAGCCAGTACAAGAAG
CTATCCAAGTTCCGGCTGACATCGCTGGTGGTCATTACAACGATGGGCGG
CTATGCCATGGCGCCAGCTGCTTTCGATCCCACAACGTTTGCGATGTGCA
CCCTGGGCACAGGACTCGTTTCGGCTGCGGCGAATGCCATTAATCAGTAT
CACGAAGTTCCTTTCGATTCGCAGATGTCGAGGACAAAGAACCGGGTGCT
CGTCACGGGGCAAATGACACCACTGCATGCAGTTACCTTCGCCGCGGTGT
CGGCAACTGCCGGCTTAAGTATGCTGTATTTCGGAGTAAATGGATTGACG
GCGGCGCTGGGAGCGGGTAACCTGTTCCTCTACACCACGATATACACACC
GATGAAGCGTATCAGCATAGTCAATACCTGGGTGGGATCGATAGTGGGCG
CCATTCCTCCGCTGATGGGATGGGCTGGTTGTGCAGCCACCCTGGACGCC
GGCGCCATGATCCTAGCCGGAGTGCTGTACGCGTGGCAGTTCCCGCACTT
CAACGCTCTGTCGTGGAACCTCCGGCCGGATTATTCACGTGCCGGCTACC
GAATGATGGCCGTTACCAATCCGGGTCTTTGTCGCCGCACTGCGCTGCGA
TATTCGGTGGCTATTGTCGGACTTTCAGCCATGGCACCCGTACTGGACGT
CACGAACTACTGGT

BS08450.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:07:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG5037-PA 1176 CG5037-RA 1..898 17..914 4490 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 10:00:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG5037-RA 1473 CG5037-RA 140..1037 17..914 4490 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 10:00:03
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10331988..10332629 273..914 3210 100 Plus
2L 23513712 2L 10331742..10331930 84..272 930 99.5 Plus
2L 23513712 2L 10331610..10331681 17..88 360 100 Plus
Blast to na_te.dros performed on 2015-02-09 10:00:06 has no hits.

BS08450.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:40:57 Download gff for BS08450.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5037-PA 1..898 17..914 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:40:10 Download gff for BS08450.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5037-PA 1..898 17..914 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:25:33 Download gff for BS08450.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5037-RA 140..1037 17..914 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:54:38 Download gff for BS08450.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5037-RA 140..1037 17..914 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:54:38 Download gff for BS08450.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 10331610..10331681 17..88 100 -> Plus
2L 10331747..10331930 89..272 100 -> Plus
2L 10331988..10332629 273..914 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:25:33 Download gff for BS08450.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10331610..10331681 17..88 100 -> Plus
arm_2L 10331747..10331930 89..272 100 -> Plus
arm_2L 10331988..10332629 273..914 100   Plus

BS08450.complete Sequence

1208 bp (1208 high quality bases) assembled on 2006-01-18

GenBank Submission: FJ636162

> BS08450.complete
GAAGTTATCAGTCGACATGATATTATTCAAAGGAATTCGGCGGGTGCAAT
CCCAGCTAAGAACGCCGGTTGATTTGGTGCTCATTCGGTACTCCACTGCA
GCAACGATAGCTTCCCAAGATGACAAAGGTGTCACTACAGCGTCGCCAGT
ATCCCAGGCGGGAAAGGTCCAGCATTTACCCGATAGTCAAATTACCTGGA
TGCCTAGTCCGTACACCATGCCCGGAAAAACTCTTAGCCAGTACAAGAAG
CTATCCAAGTTCCGGCTGACATCGCTGGTGGTCATTACAACGATGGGCGG
CTATGCCATGGCGCCAGCTGCTTTCGATCCCACAACGTTTGCGATGTGCA
CCCTGGGCACAGGACTCGTTTCGGCTGCGGCGAATGCCATTAATCAGTAT
CACGAAGTTCCTTTCGATTCGCAGATGTCGAGGACAAAGAACCGGGTGCT
CGTCACGGGGCAAATGACACCACTGCATGCAGTTACCTTCGCCGCGGTGT
CGGCAACTGCCGGCTTAAGTATGCTGTATTTCGGAGTAAATGGATTGACG
GCGGCGCTGGGAGCGGGTAACCTGTTCCTCTACACCACGATATACACACC
GATGAAGCGTATCAGCATAGTCAATACCTGGGTGGGATCGATAGTGGGCG
CCATTCCTCCGCTGATGGGATGGGCTGGTTGTGCAGCCACCCTGGACGCC
GGCGCCATGATCCTAGCCGGAGTGCTGTACGCGTGGCAGTTCCCGCACTT
CAACGCTCTGTCGTGGAACCTCCGGCCGGATTATTCACGTGCCGGCTACC
GAATGATGGCCGTTACCAATCCGGGTCTTTGTCGCCGCACTGCGCTGCGA
TATTCGGTGGCTATTGTCGGACTTTCAGCCATGGCACCCGTACTGGACGT
CACGAACTACTGGTTTGCCTTGGAAACACTACCTCTGAACGCGTACTTCG
CCTACCTTGCGTACAAGTTTCATGAAAAGTCAGATAGTGGGAGCTCGCGG
AAGCTGTTCCGATTTTCACTGATACACCTGCCCGCCCTGATGCTGCTATT
TCTGACCAATAAGAAGGAATGGTATTTCAGCAAACCCGCCGGTGAGGAGA
ACAAAAAGGAGTCCACGTACAGTGCGATAAAGCATTCTGCTAGCAGTCTT
GGTAATGTCCTGCCCGTCGCCGTAGCCGAAGGACCCAGATAGAAGCTTTC
TAGACCAT

BS08450.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:31:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG5037-RA 1176 CG5037-PA 1..1176 17..1192 5880 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:31:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG5037-RA 1473 CG5037-RA 140..1317 17..1194 5890 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:31:21
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10331988..10332674 273..959 3435 100 Plus
2L 23513712 2L 10332738..10332973 959..1194 1180 100 Plus
2L 23513712 2L 10331742..10331930 84..272 930 99.5 Plus
2L 23513712 2L 10331610..10331681 17..88 360 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:31:22 has no hits.

BS08450.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:03:23 Download gff for BS08450.complete
Subject Subject Range Query Range Percent Splice Strand
CG5037-RA 1..1176 17..1192 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:41:23 Download gff for BS08450.complete
Subject Subject Range Query Range Percent Splice Strand
CG5037-RA 148..1331 17..1202 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:26:13 Download gff for BS08450.complete
Subject Subject Range Query Range Percent Splice Strand
CG5037-RA 140..1315 17..1192 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:03:23 Download gff for BS08450.complete
Subject Subject Range Query Range Percent Splice Strand
CG5037-RA 148..1331 17..1202 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:33:19 Download gff for BS08450.complete
Subject Subject Range Query Range Percent Splice Strand
CG5037-RA 140..1315 17..1192 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:33:19 Download gff for BS08450.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10331610..10331681 17..88 100 -> Plus
2L 10331747..10331930 89..272 100 -> Plus
2L 10331988..10332674 273..959 100 -> Plus
2L 10332739..10332971 960..1192 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:26:13 Download gff for BS08450.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10331610..10331681 17..88 100 -> Plus
arm_2L 10331747..10331930 89..272 100 -> Plus
arm_2L 10331988..10332674 273..959 100 -> Plus
arm_2L 10332739..10332971 960..1192 100   Plus

BS08450.pep Sequence

Translation from 16 to 1191

> BS08450.pep
MILFKGIRRVQSQLRTPVDLVLIRYSTAATIASQDDKGVTTASPVSQAGK
VQHLPDSQITWMPSPYTMPGKTLSQYKKLSKFRLTSLVVITTMGGYAMAP
AAFDPTTFAMCTLGTGLVSAAANAINQYHEVPFDSQMSRTKNRVLVTGQM
TPLHAVTFAAVSATAGLSMLYFGVNGLTAALGAGNLFLYTTIYTPMKRIS
IVNTWVGSIVGAIPPLMGWAGCAATLDAGAMILAGVLYAWQFPHFNALSW
NLRPDYSRAGYRMMAVTNPGLCRRTALRYSVAIVGLSAMAPVLDVTNYWF
ALETLPLNAYFAYLAYKFHEKSDSGSSRKLFRFSLIHLPALMLLFLTNKK
EWYFSKPAGEENKKESTYSAIKHSASSLGNVLPVAVAEGPR*

BS08450.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:20:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG5037-PA 391 CG5037-PA 1..391 1..391 2014 100 Plus