Clone BS08451 Report

Search the DGRC for BS08451

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:84
Well:51
Vector:pDNR-Dual
Associated Gene/TranscriptCG6388-RA
Protein status:BS08451.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08451.3prime Sequence

887 bp (778 high quality bases) assembled on 2006-01-10

> BS08451.3prime
ATGGTCTAGAAAGCTTTCACGCAGTCGCCTCCAGCTTGGGCTGCTTGGGC
AGGTGCTCCACATCTCCATCATACTCATCCACTGCTTGTGGAGTGTCCTG
TTGGTCATCCTCCGCCTGTTGCTCCGACGCTTTGTGACGCTGTTTCTTGT
TCTGGTTACGATAGCTCTTGGGTAGTTTGTTGTCACCAATCATAATAGTG
GCTCTGGTTCCAGGTCCCCAATGTGGAGTCGGATTCTCTTGGAAGCGCGA
TAATGCCGATTTGCGACTCTTCGGGTTCGCCTCCGGATGGAGTTCATCGA
ACTCGTAGACAGCAGTGCATTCTTTCGAAAGTATGGCCGCCAGTGGAGAT
CCAGGAATCATCCTTTCGGGATTTACCGGATGTCGCTTGCTCCAGCTGCG
CAGAATGTCCCATAGCACCGCTGGTGGAGCATTGGTTTTCAACGAATTCT
TCGAGGCATGCGAGTATGAGACTCGATAGCCAGCGTGGAGAATAGCAGAC
CGGAACTTTAGCATGGGCACGATTTCTAGCTTGAGCACACAGCACAGTTT
GTCCGGCGTGTAGTAAAGGGGAACATCCTGCAGCTCCTCTTGGACCATGG
AAAGAACTCCAACGATTCGTCTCTGGGTTCCCAGCGATTGCAAGGTGGTC
TCCTGGACCGCCGTTAAAAGATCCTGCACAAATTCGGGGTTATGAATCGG
TGCCGACCAGATGGGTCCACCCAGATGATGCCTGTGACCGCAATGTTCGC
ACTGCGAGTTGACCGCCGGACCAGTGGGAATTCCGAACTTCAGCTGCTGG
GGATTACCAGCCGTGGGATTTGGCTTGGTTATGCCCAAGGGCTGCAGCGT
GAAGGTCTCACATCCGGTGCATTGGTATATCCAAGAC

BS08451.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:07:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG6388-PA 1737 CG6388-RA 867..1737 887..17 4355 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:51:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG6388-RA 1815 CG6388-RA 896..1766 887..17 4355 100 Minus
CG5435-RB 929 CG5435-RB 784..929 17..162 730 100 Plus
CG5435-RA 903 CG5435-RA 758..903 17..162 730 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:51:47
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12429045..12429741 887..191 3485 100 Minus
2L 23513712 2L 12429798..12429972 191..17 875 100 Minus
Blast to na_te.dros performed on 2015-02-11 23:51:51 has no hits.

BS08451.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:40:58 Download gff for BS08451.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6388-PA 867..1737 17..887 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:40:11 Download gff for BS08451.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6388-PA 867..1737 17..887 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:38:10 Download gff for BS08451.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6388-RA 896..1766 17..887 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:06:30 Download gff for BS08451.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6388-RA 896..1766 17..887 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:06:30 Download gff for BS08451.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 12429045..12429740 192..887 100 -> Minus
2L 12429798..12429972 17..191 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:38:10 Download gff for BS08451.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12429045..12429740 192..887 100 -> Minus
arm_2L 12429798..12429972 17..191 100   Minus

BS08451.5prime Sequence

907 bp (787 high quality bases) assembled on 2006-01-10

> BS08451.5prime
GAAGTTATCAGTCGACATGGAAGTGGACGAGGAAAAGCCGCAGATTATTG
CTGAAAATCCCAACGAAAACGTGATACGCGAACGTAATGCGGAGATCGTT
TCCGGCGGCAATGTGTTCTACAATCCTGTCCAGGAATTCAATCGAGATCT
GAGCATTGCTGCTCTGAATGTTTATCGACAGAGATTGACCAAGGAGCGGA
GCGAAAAGGCGCTCAAAAAGCAGCGGAAGAAGGTCAAGGAACAGGAGGAT
GAGAAGACCACTCCCGTTCCCGAGGATCCACCTGTTTATGAGGCCGGTAC
TCGATATGAGGATGGACTTCGGATCCTGGAGGCACTGGCAGCCACCGGTT
TGCGTAGCATCCGTTACGCGCAGGAAATCGCCGGTGTACGCCAGATCGTG
GCCAACGATCTTTCCCGCCAGGCAGTGGCCTCGATCAACACAAACATCCG
GCACAACAAGGTGGAGGAGCTGATCGAGCCCAGTCACTCCGATGCAATGA
CCCTCATGTATCTTTCGACGCAACCCGAGAAGCGTTTTGATGCAGTTGAC
TTGGATCCGTACGGATGTCCCAATCGCTTTTTGGATGGCGCTATGCAGTG
CCTGGTGGACGGCGGCCTGCTGCTGGTGACAGCCACCGACATGGCCGTGC
TGGCCGGAAATGCTCCGGAAGCTTGCTATGTAAAATACGGATCGGTTCCG
CTGCGGATGAAGTGCTGTCACGAGATGGCATTGCGCATTTTGCTGCACTG
CATCGAGAGCCACGCGAACAGGTACGGCAAGTACATCGAACCACTACTGA
GCATATCAGCGGACTTTTACATCCGGATATTTGTGCGTGTGTACGTCGGC
CAGGCCCAATGCAAGCTGTCGATGAGCAAGCAGTCTTGGATATACCAATG
CACCGGA

BS08451.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:07:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG6388-PA 1737 CG6388-RA 1..891 17..907 4455 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 02:55:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG6388-RA 1815 CG6388-RA 30..920 17..907 4455 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 02:55:07
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12428139..12428598 40..499 2300 100 Plus
2L 23513712 2L 12428661..12429069 499..907 2045 100 Plus
Blast to na_te.dros performed 2015-02-10 02:55:11
Subject Length Description Subject Range Query Range Score Percent Strand
G-element 4346 G-element DMREPG 4346bp Derived from X06950 (g8427) (Rel. 16, Last updated, Version 1). 356..412 186..241 129 71.9 Plus

BS08451.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:40:59 Download gff for BS08451.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6388-PA 1..890 17..906 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:40:12 Download gff for BS08451.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6388-PA 1..890 17..906 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:41:17 Download gff for BS08451.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6388-RA 22..919 8..906 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:12:02 Download gff for BS08451.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6388-RA 22..919 8..906 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:12:02 Download gff for BS08451.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 12428049..12428083 8..43 91 -> Plus
2L 12428143..12428597 44..498 100 -> Plus
2L 12428661..12429068 499..906 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:41:17 Download gff for BS08451.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12428049..12428083 8..43 91 -> Plus
arm_2L 12428143..12428597 44..498 100 -> Plus
arm_2L 12428661..12429068 499..906 100   Plus

BS08451.complete Sequence

1769 bp assembled on 2007-10-31

GenBank Submission: FJ636163

> BS08451.complete
GAAGTTATCAGTCGACATGGAAGTGGACGAGGAAAAGCCGCAGATTATTG
CTGAAAATCCCAACGAAAACGTGATACGCGAACGTAATGCGGAGATCGTT
TCCGGCGGCAATGTGTTCTACAATCCTGTCCAGGAATTCAATCGAGATCT
GAGCATTGCTGCTCTGAATGTTTATCGACAGAGATTGACCAAGGAGCGGA
GCGAAAAGGCGCTCAAAAAGCAGCGGAAGAAGGTCAAGGAACAGGAGGAT
GAGAAGACCACTCCCGTTCCCGAGGATCCACCTGTTTATGAGGCCGGTAC
TCGATATGAGGATGGACTTCGGATCCTGGAGGCACTGGCAGCCACCGGTT
TGCGTAGCATCCGTTACGCGCAGGAAATCGCCGGTGTACGCCAGATCGTG
GCCAACGATCTTTCCCGCCAGGCAGTGGCCTCGATCAACACAAACATCCG
GCACAACAAGGTGGAGGAGCTGATCGAGCCCAGTCACTCCGATGCAATGA
CCCTCATGTATCTTTCGACGCAACCCGAGAAGCGTTTTGATGCAGTTGAC
TTGGATCCGTACGGATGTCCCAATCGCTTTTTGGATGGCGCTATGCAGTG
CCTGGTGGACGGCGGCCTGCTGCTGGTGACAGCCACCGACATGGCCGTGC
TGGCCGGAAATGCTCCGGAAGCTTGCTATGTAAAATACGGATCGGTTCCG
CTGCGGATGAAGTGCTGTCACGAGATGGCATTGCGCATTTTGCTGCACTG
CATCGAGAGCCACGCGAACAGGTACGGCAAGTACATCGAACCACTACTGA
GCATATCAGCGGACTTTTACATCCGGATATTTGTGCGTGTGTACGTCGGC
CAGGCCCAATGCAAGCTGTCGATGAGCAAGCAGTCTTGGATATACCAATG
CACCGGATGTGAGACCTTCACGCTGCAGCCCTTGGGCATAACCAAGCCAA
ATCCCACGGCTGGTAATCCCCAGCAGCTGAAGTTCGGAATTCCCACTGGT
CCGGCGGTCAACTCGCAGTGCGAACATTGCGGTCACAGGCATCATCTGGG
TGGACCCATCTGGTCGGCACCGATTCATAACCCCGAATTTGTGCAGGATC
TTTTAACGGCGGTCCAGGAGACCACCTTGCAATCGCTGGGAACCCAGAGA
CGAATCGTTGGAGTTCTTTCCATGGTCCAAGAGGAGCTGCAGGATGTTCC
CCTTTACTACACGCCGGACAAACTGTGCTGTGTGCTCAAGCTAGAAATCG
TGCCCATGCTAAAGTTCCGGTCTGCTATTCTCCACGCTGGCTATCGAGTC
TCATACTCGCATGCCTCGAAGAATTCGTTGAAAACCAATGCTCCACCAGC
GGTGCTATGGGACATTCTGCGCAGCTGGAGCAAGCGACATCCGGTAAATC
CCGAAAGGATGATTCCTGGATCTCCACTGGCGGCCATACTTTCGAAAGAA
TGCACTGCTGTCTACGAGTTCGATGAACTCCATCCGGAGGCGAACCCGAA
GAGTCGCAAATCGGCATTATCGCGCTTCCAAGAGAATCCGACTCCACATT
GGGGACCTGGAACCAGAGCCACTATTATGATTGGTGACAACAAACTACCC
AAGAGCTATCGTAACCAGAACAAGAAACAGCGTCACAAAGCGTCGGAGCA
ACAGGCGGAGGATGACCAACAGGACACTCCACAAGCAGTGGATGAGTATG
ATGGAGATGTGGAGCACCTGCCCAAGCAGCCCAAGCTGGAGGCGACTGCG
TGAAAGCTTTCTAGACCAT

BS08451.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:26:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG6388-RA 1737 CG6388-PA 1..1737 17..1753 8685 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:26:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG6388-RA 1815 CG6388-RA 30..1766 17..1753 8685 100 Plus
CG5435-RB 929 CG5435-RB 784..929 1753..1608 730 100 Minus
CG5435-RA 903 CG5435-RA 758..903 1753..1608 730 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:26:29
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12428661..12429741 499..1579 5405 100 Plus
2L 23513712 2L 12428139..12428598 40..499 2300 100 Plus
2L 23513712 2L 12429798..12429972 1579..1753 875 100 Plus
Blast to na_te.dros performed 2014-11-27 13:26:30
Subject Length Description Subject Range Query Range Score Percent Strand
G-element 4346 G-element DMREPG 4346bp Derived from X06950 (g8427) (Rel. 16, Last updated, Version 1). 356..412 186..241 129 71.9 Plus

BS08451.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:09:18 Download gff for BS08451.complete
Subject Subject Range Query Range Percent Splice Strand
CG6388-RA 1..1737 17..1753 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:39:08 Download gff for BS08451.complete
Subject Subject Range Query Range Percent Splice Strand
CG6388-RA 18..1762 8..1753 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:50:51 Download gff for BS08451.complete
Subject Subject Range Query Range Percent Splice Strand
CG6388-RA 30..1765 17..1752 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:47:43 Download gff for BS08451.complete
Subject Subject Range Query Range Percent Splice Strand
CG6388-RA 26..1761 17..1752 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:18:27 Download gff for BS08451.complete
Subject Subject Range Query Range Percent Splice Strand
CG6388-RA 30..1765 17..1752 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:18:27 Download gff for BS08451.complete
Subject Subject Range Query Range Percent Splice Strand
2L 12428057..12428083 17..43 100 -> Plus
2L 12428143..12428597 44..498 100 -> Plus
2L 12428661..12429740 499..1578 100 -> Plus
2L 12429798..12429971 1579..1752 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:50:51 Download gff for BS08451.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12428057..12428083 17..43 100 -> Plus
arm_2L 12428143..12428597 44..498 100 -> Plus
arm_2L 12428661..12429740 499..1578 100 -> Plus
arm_2L 12429798..12429971 1579..1752 100   Plus

BS08451.pep Sequence

Translation from 16 to 1752

> BS08451.pep
MEVDEEKPQIIAENPNENVIRERNAEIVSGGNVFYNPVQEFNRDLSIAAL
NVYRQRLTKERSEKALKKQRKKVKEQEDEKTTPVPEDPPVYEAGTRYEDG
LRILEALAATGLRSIRYAQEIAGVRQIVANDLSRQAVASINTNIRHNKVE
ELIEPSHSDAMTLMYLSTQPEKRFDAVDLDPYGCPNRFLDGAMQCLVDGG
LLLVTATDMAVLAGNAPEACYVKYGSVPLRMKCCHEMALRILLHCIESHA
NRYGKYIEPLLSISADFYIRIFVRVYVGQAQCKLSMSKQSWIYQCTGCET
FTLQPLGITKPNPTAGNPQQLKFGIPTGPAVNSQCEHCGHRHHLGGPIWS
APIHNPEFVQDLLTAVQETTLQSLGTQRRIVGVLSMVQEELQDVPLYYTP
DKLCCVLKLEIVPMLKFRSAILHAGYRVSYSHASKNSLKTNAPPAVLWDI
LRSWSKRHPVNPERMIPGSPLAAILSKECTAVYEFDELHPEANPKSRKSA
LSRFQENPTPHWGPGTRATIMIGDNKLPKSYRNQNKKQRHKASEQQAEDD
QQDTPQAVDEYDGDVEHLPKQPKLEATA*

BS08451.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:38:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG6388-PA 578 CG6388-PA 1..578 1..578 3046 100 Plus