Clone Sequence Records
BS08451.3prime Sequence
887 bp (778 high quality bases) assembled on 2006-01-10
> BS08451.3prime
ATGGTCTAGAAAGCTTTCACGCAGTCGCCTCCAGCTTGGGCTGCTTGGGC
AGGTGCTCCACATCTCCATCATACTCATCCACTGCTTGTGGAGTGTCCTG
TTGGTCATCCTCCGCCTGTTGCTCCGACGCTTTGTGACGCTGTTTCTTGT
TCTGGTTACGATAGCTCTTGGGTAGTTTGTTGTCACCAATCATAATAGTG
GCTCTGGTTCCAGGTCCCCAATGTGGAGTCGGATTCTCTTGGAAGCGCGA
TAATGCCGATTTGCGACTCTTCGGGTTCGCCTCCGGATGGAGTTCATCGA
ACTCGTAGACAGCAGTGCATTCTTTCGAAAGTATGGCCGCCAGTGGAGAT
CCAGGAATCATCCTTTCGGGATTTACCGGATGTCGCTTGCTCCAGCTGCG
CAGAATGTCCCATAGCACCGCTGGTGGAGCATTGGTTTTCAACGAATTCT
TCGAGGCATGCGAGTATGAGACTCGATAGCCAGCGTGGAGAATAGCAGAC
CGGAACTTTAGCATGGGCACGATTTCTAGCTTGAGCACACAGCACAGTTT
GTCCGGCGTGTAGTAAAGGGGAACATCCTGCAGCTCCTCTTGGACCATGG
AAAGAACTCCAACGATTCGTCTCTGGGTTCCCAGCGATTGCAAGGTGGTC
TCCTGGACCGCCGTTAAAAGATCCTGCACAAATTCGGGGTTATGAATCGG
TGCCGACCAGATGGGTCCACCCAGATGATGCCTGTGACCGCAATGTTCGC
ACTGCGAGTTGACCGCCGGACCAGTGGGAATTCCGAACTTCAGCTGCTGG
GGATTACCAGCCGTGGGATTTGGCTTGGTTATGCCCAAGGGCTGCAGCGT
GAAGGTCTCACATCCGGTGCATTGGTATATCCAAGAC
BS08451.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:07:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6388-PA | 1737 | CG6388-RA | 867..1737 | 887..17 | 4355 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:51:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6388-RA | 1815 | CG6388-RA | 896..1766 | 887..17 | 4355 | 100 | Minus |
CG5435-RB | 929 | CG5435-RB | 784..929 | 17..162 | 730 | 100 | Plus |
CG5435-RA | 903 | CG5435-RA | 758..903 | 17..162 | 730 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:51:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 12429045..12429741 | 887..191 | 3485 | 100 | Minus |
2L | 23513712 | 2L | 12429798..12429972 | 191..17 | 875 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 23:51:51 has no hits.
BS08451.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:40:58 Download gff for
BS08451.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6388-PA | 867..1737 | 17..887 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:40:11 Download gff for
BS08451.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6388-PA | 867..1737 | 17..887 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:38:10 Download gff for
BS08451.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6388-RA | 896..1766 | 17..887 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:06:30 Download gff for
BS08451.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6388-RA | 896..1766 | 17..887 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:06:30 Download gff for
BS08451.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 12429045..12429740 | 192..887 | 100 | -> | Minus |
2L | 12429798..12429972 | 17..191 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:38:10 Download gff for
BS08451.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 12429045..12429740 | 192..887 | 100 | -> | Minus |
arm_2L | 12429798..12429972 | 17..191 | 100 | | Minus |
BS08451.5prime Sequence
907 bp (787 high quality bases) assembled on 2006-01-10
> BS08451.5prime
GAAGTTATCAGTCGACATGGAAGTGGACGAGGAAAAGCCGCAGATTATTG
CTGAAAATCCCAACGAAAACGTGATACGCGAACGTAATGCGGAGATCGTT
TCCGGCGGCAATGTGTTCTACAATCCTGTCCAGGAATTCAATCGAGATCT
GAGCATTGCTGCTCTGAATGTTTATCGACAGAGATTGACCAAGGAGCGGA
GCGAAAAGGCGCTCAAAAAGCAGCGGAAGAAGGTCAAGGAACAGGAGGAT
GAGAAGACCACTCCCGTTCCCGAGGATCCACCTGTTTATGAGGCCGGTAC
TCGATATGAGGATGGACTTCGGATCCTGGAGGCACTGGCAGCCACCGGTT
TGCGTAGCATCCGTTACGCGCAGGAAATCGCCGGTGTACGCCAGATCGTG
GCCAACGATCTTTCCCGCCAGGCAGTGGCCTCGATCAACACAAACATCCG
GCACAACAAGGTGGAGGAGCTGATCGAGCCCAGTCACTCCGATGCAATGA
CCCTCATGTATCTTTCGACGCAACCCGAGAAGCGTTTTGATGCAGTTGAC
TTGGATCCGTACGGATGTCCCAATCGCTTTTTGGATGGCGCTATGCAGTG
CCTGGTGGACGGCGGCCTGCTGCTGGTGACAGCCACCGACATGGCCGTGC
TGGCCGGAAATGCTCCGGAAGCTTGCTATGTAAAATACGGATCGGTTCCG
CTGCGGATGAAGTGCTGTCACGAGATGGCATTGCGCATTTTGCTGCACTG
CATCGAGAGCCACGCGAACAGGTACGGCAAGTACATCGAACCACTACTGA
GCATATCAGCGGACTTTTACATCCGGATATTTGTGCGTGTGTACGTCGGC
CAGGCCCAATGCAAGCTGTCGATGAGCAAGCAGTCTTGGATATACCAATG
CACCGGA
BS08451.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:07:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6388-PA | 1737 | CG6388-RA | 1..891 | 17..907 | 4455 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 02:55:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6388-RA | 1815 | CG6388-RA | 30..920 | 17..907 | 4455 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 02:55:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 12428139..12428598 | 40..499 | 2300 | 100 | Plus |
2L | 23513712 | 2L | 12428661..12429069 | 499..907 | 2045 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 02:55:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
G-element | 4346 | G-element DMREPG 4346bp Derived from X06950 (g8427) (Rel. 16, Last updated, Version 1). | 356..412 | 186..241 | 129 | 71.9 | Plus |
BS08451.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:40:59 Download gff for
BS08451.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6388-PA | 1..890 | 17..906 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:40:12 Download gff for
BS08451.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6388-PA | 1..890 | 17..906 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:41:17 Download gff for
BS08451.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6388-RA | 22..919 | 8..906 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:12:02 Download gff for
BS08451.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6388-RA | 22..919 | 8..906 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:12:02 Download gff for
BS08451.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 12428049..12428083 | 8..43 | 91 | -> | Plus |
2L | 12428143..12428597 | 44..498 | 100 | -> | Plus |
2L | 12428661..12429068 | 499..906 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:41:17 Download gff for
BS08451.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 12428049..12428083 | 8..43 | 91 | -> | Plus |
arm_2L | 12428143..12428597 | 44..498 | 100 | -> | Plus |
arm_2L | 12428661..12429068 | 499..906 | 100 | | Plus |
BS08451.complete Sequence
1769 bp assembled on 2007-10-31
GenBank Submission: FJ636163
> BS08451.complete
GAAGTTATCAGTCGACATGGAAGTGGACGAGGAAAAGCCGCAGATTATTG
CTGAAAATCCCAACGAAAACGTGATACGCGAACGTAATGCGGAGATCGTT
TCCGGCGGCAATGTGTTCTACAATCCTGTCCAGGAATTCAATCGAGATCT
GAGCATTGCTGCTCTGAATGTTTATCGACAGAGATTGACCAAGGAGCGGA
GCGAAAAGGCGCTCAAAAAGCAGCGGAAGAAGGTCAAGGAACAGGAGGAT
GAGAAGACCACTCCCGTTCCCGAGGATCCACCTGTTTATGAGGCCGGTAC
TCGATATGAGGATGGACTTCGGATCCTGGAGGCACTGGCAGCCACCGGTT
TGCGTAGCATCCGTTACGCGCAGGAAATCGCCGGTGTACGCCAGATCGTG
GCCAACGATCTTTCCCGCCAGGCAGTGGCCTCGATCAACACAAACATCCG
GCACAACAAGGTGGAGGAGCTGATCGAGCCCAGTCACTCCGATGCAATGA
CCCTCATGTATCTTTCGACGCAACCCGAGAAGCGTTTTGATGCAGTTGAC
TTGGATCCGTACGGATGTCCCAATCGCTTTTTGGATGGCGCTATGCAGTG
CCTGGTGGACGGCGGCCTGCTGCTGGTGACAGCCACCGACATGGCCGTGC
TGGCCGGAAATGCTCCGGAAGCTTGCTATGTAAAATACGGATCGGTTCCG
CTGCGGATGAAGTGCTGTCACGAGATGGCATTGCGCATTTTGCTGCACTG
CATCGAGAGCCACGCGAACAGGTACGGCAAGTACATCGAACCACTACTGA
GCATATCAGCGGACTTTTACATCCGGATATTTGTGCGTGTGTACGTCGGC
CAGGCCCAATGCAAGCTGTCGATGAGCAAGCAGTCTTGGATATACCAATG
CACCGGATGTGAGACCTTCACGCTGCAGCCCTTGGGCATAACCAAGCCAA
ATCCCACGGCTGGTAATCCCCAGCAGCTGAAGTTCGGAATTCCCACTGGT
CCGGCGGTCAACTCGCAGTGCGAACATTGCGGTCACAGGCATCATCTGGG
TGGACCCATCTGGTCGGCACCGATTCATAACCCCGAATTTGTGCAGGATC
TTTTAACGGCGGTCCAGGAGACCACCTTGCAATCGCTGGGAACCCAGAGA
CGAATCGTTGGAGTTCTTTCCATGGTCCAAGAGGAGCTGCAGGATGTTCC
CCTTTACTACACGCCGGACAAACTGTGCTGTGTGCTCAAGCTAGAAATCG
TGCCCATGCTAAAGTTCCGGTCTGCTATTCTCCACGCTGGCTATCGAGTC
TCATACTCGCATGCCTCGAAGAATTCGTTGAAAACCAATGCTCCACCAGC
GGTGCTATGGGACATTCTGCGCAGCTGGAGCAAGCGACATCCGGTAAATC
CCGAAAGGATGATTCCTGGATCTCCACTGGCGGCCATACTTTCGAAAGAA
TGCACTGCTGTCTACGAGTTCGATGAACTCCATCCGGAGGCGAACCCGAA
GAGTCGCAAATCGGCATTATCGCGCTTCCAAGAGAATCCGACTCCACATT
GGGGACCTGGAACCAGAGCCACTATTATGATTGGTGACAACAAACTACCC
AAGAGCTATCGTAACCAGAACAAGAAACAGCGTCACAAAGCGTCGGAGCA
ACAGGCGGAGGATGACCAACAGGACACTCCACAAGCAGTGGATGAGTATG
ATGGAGATGTGGAGCACCTGCCCAAGCAGCCCAAGCTGGAGGCGACTGCG
TGAAAGCTTTCTAGACCAT
BS08451.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:26:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6388-RA | 1737 | CG6388-PA | 1..1737 | 17..1753 | 8685 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:26:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6388-RA | 1815 | CG6388-RA | 30..1766 | 17..1753 | 8685 | 100 | Plus |
CG5435-RB | 929 | CG5435-RB | 784..929 | 1753..1608 | 730 | 100 | Minus |
CG5435-RA | 903 | CG5435-RA | 758..903 | 1753..1608 | 730 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:26:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 12428661..12429741 | 499..1579 | 5405 | 100 | Plus |
2L | 23513712 | 2L | 12428139..12428598 | 40..499 | 2300 | 100 | Plus |
2L | 23513712 | 2L | 12429798..12429972 | 1579..1753 | 875 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 13:26:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
G-element | 4346 | G-element DMREPG 4346bp Derived from X06950 (g8427) (Rel. 16, Last updated, Version 1). | 356..412 | 186..241 | 129 | 71.9 | Plus |
BS08451.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:09:18 Download gff for
BS08451.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6388-RA | 1..1737 | 17..1753 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:39:08 Download gff for
BS08451.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6388-RA | 18..1762 | 8..1753 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:50:51 Download gff for
BS08451.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6388-RA | 30..1765 | 17..1752 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:47:43 Download gff for
BS08451.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6388-RA | 26..1761 | 17..1752 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:18:27 Download gff for
BS08451.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6388-RA | 30..1765 | 17..1752 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:18:27 Download gff for
BS08451.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 12428057..12428083 | 17..43 | 100 | -> | Plus |
2L | 12428143..12428597 | 44..498 | 100 | -> | Plus |
2L | 12428661..12429740 | 499..1578 | 100 | -> | Plus |
2L | 12429798..12429971 | 1579..1752 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:50:51 Download gff for
BS08451.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 12428057..12428083 | 17..43 | 100 | -> | Plus |
arm_2L | 12428143..12428597 | 44..498 | 100 | -> | Plus |
arm_2L | 12428661..12429740 | 499..1578 | 100 | -> | Plus |
arm_2L | 12429798..12429971 | 1579..1752 | 100 | | Plus |
BS08451.pep Sequence
Translation from 16 to 1752
> BS08451.pep
MEVDEEKPQIIAENPNENVIRERNAEIVSGGNVFYNPVQEFNRDLSIAAL
NVYRQRLTKERSEKALKKQRKKVKEQEDEKTTPVPEDPPVYEAGTRYEDG
LRILEALAATGLRSIRYAQEIAGVRQIVANDLSRQAVASINTNIRHNKVE
ELIEPSHSDAMTLMYLSTQPEKRFDAVDLDPYGCPNRFLDGAMQCLVDGG
LLLVTATDMAVLAGNAPEACYVKYGSVPLRMKCCHEMALRILLHCIESHA
NRYGKYIEPLLSISADFYIRIFVRVYVGQAQCKLSMSKQSWIYQCTGCET
FTLQPLGITKPNPTAGNPQQLKFGIPTGPAVNSQCEHCGHRHHLGGPIWS
APIHNPEFVQDLLTAVQETTLQSLGTQRRIVGVLSMVQEELQDVPLYYTP
DKLCCVLKLEIVPMLKFRSAILHAGYRVSYSHASKNSLKTNAPPAVLWDI
LRSWSKRHPVNPERMIPGSPLAAILSKECTAVYEFDELHPEANPKSRKSA
LSRFQENPTPHWGPGTRATIMIGDNKLPKSYRNQNKKQRHKASEQQAEDD
QQDTPQAVDEYDGDVEHLPKQPKLEATA*
BS08451.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:38:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6388-PA | 578 | CG6388-PA | 1..578 | 1..578 | 3046 | 100 | Plus |