Clone Sequence Records
BS08452.3prime Sequence
890 bp (834 high quality bases) assembled on 2006-01-10
> BS08452.3prime
ATGGTCTAGAAAGCTTTTATGAGAACAAGTTGTTCCGTCGCTTGAGGGAG
CCGAACTTCTTCTCCGCCTCGAGTAACATCTTTTCGTTTCTAACCACCTC
GAAGGGAATGGTCCTGGACAGACGATCCATTTCCTGATCCGAGGGAAAGT
CCTCAAAGCTCATGTTGCTGAAGCCGGTTTTGGCAGAATTTTGAATGGTG
TTTGATTGGAAATTGCGGCCGCCTCCAGCACCTCGATTCTCATCCTGATC
CTGTTCGTCGTCGTCATCATCGTGGGACTGGTACTGCAATCGCTGGTGCT
TCTGCTTGCTGCCGGAACTAAGGGAACTGGTGGATCCAAGGGCAGCCGCG
CTTACTTTTTTGTACGAATGCCCCTTTACCTTTTGGGTGAGCTTTCCCGG
CAGAACCCTTACAGCCAGATTGGACTTCTCCTTCTTGGGTTTCGCAGGGG
TAGGTATACCGATTCCGTCTGCCACCACATCGGCATCACGCAACACCACG
GGTTCCTCCTCGTCGTCCGGTGTGAAATCTGAGCAGCGATCTTGGGAGAT
TTGCACATACGCATTATCGGCAATGGGCAGCAAAGGACGCAGATGGGTAA
CGACCGCTGGTATTGGAACTGGAACGGCTGGAACGGAAACAGGGGCAGGA
ACTGGAACTGGAAGAGGTGCCTGAACTGGAATCACAGCTGCTGGTGAGGA
TTGTGGCTGGTTAATGGAGCAGGAACTGGTGCTCATGCTGGAGAAAGACG
GCACATTCACATAGACACTGCTGGTGCCACTCGACTTAGCAGTCTGGTTA
TTATTATTATTATTATAGTTCATCGGTGGCTCCGGCGTTTTGTTGATAAT
AATCGAGTGATTTATGGTCACCAGTTGTGGGGCAGACGAA
BS08452.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:07:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10637-PA | 4467 | Nak-RA | 3594..4467 | 890..17 | 4370 | 100 | Minus |
| CG10637-PB | 2853 | Nak-RB | 1980..2853 | 890..17 | 4370 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:45:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nak-RD | 5364 | CG10637-RD | 3923..4796 | 890..17 | 4370 | 100 | Minus |
| Nak-RA | 5196 | CG10637-RA | 3923..4796 | 890..17 | 4370 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:44:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18958300..18959173 | 17..890 | 4370 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:44:59 has no hits.
BS08452.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:41:00 Download gff for
BS08452.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nak-PA | 3596..4467 | 17..888 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:40:14 Download gff for
BS08452.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10637-PB | 1982..2853 | 17..888 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:01:46 Download gff for
BS08452.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nak-RA | 3923..4796 | 17..890 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:06:36 Download gff for
BS08452.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nak-RA | 3923..4796 | 17..890 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:06:36 Download gff for
BS08452.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18958300..18959173 | 17..890 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:01:46 Download gff for
BS08452.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18958300..18959173 | 17..890 | 100 | | Plus |
BS08452.5prime Sequence
824 bp (770 high quality bases) assembled on 2006-01-10
> BS08452.5prime
GAAGTTATCAGTCGACATGGGCGACGGTCAGCAGACTTTGGCTAGTGCTG
CCTCGAATCCCGGGATATATGCATCTTCAACGGCAAACTCAGCCGCGGTA
TCCATTAGCGAATTAATGAAACCAGGACAAACGGCGGTGGAAAAGCGAGT
TGAAGCCTGGAATCCGTTCGAAGAGGAGCAGCCTTTCAGCCAGATGACTG
AGGATCACATCTTTGAGGCGGAGTTCGACAAGATACGACAGAGAGGCAGT
CAAGGAAGCATCACAGCAAAATCGGCATCCACAACTTCCACGCTAACACC
AACGGAGCAGATTCCCTCTGCGGTTGTGGCTCCTGTTACAGCTGCTCCTG
GTGCAGTGCCTCCTCCGCCGATTGCTGCCGCTGTGTCTCCTTACCCGTCG
CAGGTCTCCGAGGATCCATTCGGATCGGCGCCATTCAGTTTGCCACCCGG
ACTGCGCGAGAAGGCGAGCTCGCTGCGCAAAACCGGAGCGAAATTCATCG
GCGTTTCATCTGGTGGAACAGGAGGCGGAGTGGCCACGCCTATCGGCTTG
GTAGCGGGAGGAGCAAACACCGCCACCTCTTCCAACTCATCCAAGTGGAT
GCTCTCCCCCACCCTGGAGGTTTCCAGCGAAGAGAAGACCTCGCTTATCA
GTAAACTCAAAACAGACTCAGAATGTGGAATTCCAGGCGCTGTTGGAGGA
GCTGGAGAAGGTGTCTCTGGTTATGTTAAGCTACCTGTAGAAGATCGCAA
CAAGTACGAGAAGCTGCGCAGCAAAGATCAGCCGACTTCCGATGACTCCG
ATTCCGAGGCTTCGGAGTTTCTTC
BS08452.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:07:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10637-PA | 4467 | Nak-RA | 1614..2417 | 16..819 | 4020 | 100 | Plus |
| CG10637-PB | 2853 | Nak-RB | 1..803 | 17..819 | 4015 | 100 | Plus |
| CG10637-PC | 2097 | Nak-RC | 1614..2086 | 16..488 | 2365 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:47:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nak-RD | 5364 | CG10637-RD | 1943..2746 | 16..819 | 4020 | 100 | Plus |
| Nak-RA | 5196 | CG10637-RA | 1943..2746 | 16..819 | 4020 | 100 | Plus |
| Nak-RE | 4280 | CG10637-RE | 1943..2415 | 16..488 | 2365 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:46:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18960350..18960682 | 819..487 | 1665 | 100 | Minus |
| 2L | 23513712 | 2L | 18963170..18963412 | 258..16 | 1215 | 100 | Minus |
| 2L | 23513712 | 2L | 18962885..18963115 | 488..258 | 1155 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 01:47:00 has no hits.
BS08452.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:41:01 Download gff for
BS08452.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nak-PA | 1614..2420 | 16..824 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:40:15 Download gff for
BS08452.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10637-PA | 1614..2420 | 16..824 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:50:59 Download gff for
BS08452.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nak-RA | 1943..2749 | 16..824 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:49:17 Download gff for
BS08452.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nak-RA | 1943..2749 | 16..824 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:49:17 Download gff for
BS08452.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18962885..18963115 | 258..488 | 100 | <- | Minus |
| 2L | 18963171..18963412 | 16..257 | 100 | | Minus |
| 2L | 18960345..18960680 | 489..824 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:50:59 Download gff for
BS08452.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18960345..18960680 | 489..824 | 99 | <- | Minus |
| arm_2L | 18962885..18963115 | 258..488 | 100 | <- | Minus |
| arm_2L | 18963171..18963412 | 16..257 | 100 | | Minus |
BS08452.complete Sequence
2885 bp assembled on 2008-08-14
GenBank Submission: FJ636164
> BS08452.complete
GAAGTTATCAGTCGACATGGGCGACGGTCAGCAGACTTTGGCTAGTGCTG
CCTCGAATCCCGGGATATATGCATCTTCAACGGCAAACTCAGCCGCGGTA
TCCATTAGCGAATTAATGAAACCAGGACAAACGGCGGTGGAAAAGCGAGT
TGAAGCCTGGAATCCGTTCGAAGAGGAGCAGCCTTTCAGCCAGATGACTG
AGGATCACATCTTTGAGGCGGAGTTCGACAAGATACGACAGAGAGGCAGT
CAAGGAAGCATCACAGCAAAATCGGCATCCACAACTTCCACGCTAACACC
AACGGAGCAGATTCCCTCTGCGGTTGTGGCTCCTGTTACAGCTGCTCCTG
GTGCAGTGCCTCCTCCGCCGATTGCTGCCGCTGTGTCTCCTTACCCGTCG
CAGGTCTCCGAGGATCCATTCGGATCGGCGCCATTCAGTTTGCCACCCGG
ACTGCGCGAGAAGGCGAGCTCGCTGCGCAAAACCGGAGCGAAATTCATCG
GCGTTTCATCTGGTGGAACAGGAGGCGGAGTGGCCACGCCTATCGGCTTG
GTAGCGGGAGGAGCAAACACCGCCACCTCTTCCAACTCATCCAAGTGGAT
GCTCTCCCCCACCCTGGAGGTTTCCAGCGAAGAGAAGACCTCGCTTATCA
GTAAACTCAAAACAGACTCAGAATGTGGAATTCCAGGCGCTGTTGGAGGA
GCTGGAGAAGGTGTCTCTGGTTATGTTAAGCTACCTGTAGAAGATCGCAA
CAAGTACGAGAAGCTGCGCAGCAAAGATCAGCCGACTTCCGATGACTCCG
ATTCCGAGGCTTCGGAGTTCTTTCAACAAGACAGCGATGAAGGAGGTGGG
GGCATCTTTAGGCAAATGCAGATGGTGACAAGCAATTTGCCGGAAACCAT
CCATAAAATCCAACAGGTTGCCTATCACAAGGTGGACAAGACAGCTCATC
TGCCAATTGTGAAGAAACTTCGCGATAAGACCAAGAAACCCACAACAGCT
GCCCATCAAGCGGCCCAACAACTAAATCTCATGGCTGCCGCGGTAGCTGC
ACAAGCTGAAGAAGCTGCCAAGGCGGCGGAATCCGACGGTGATTCGATCG
GATCTGCCAGTGACCTGCGGGCAGAGGATGATGATCTGTTTGACGAGAAT
CCTCGCCAGACACAAGCCAAGCAACGTCGTCCTCTGCCAACAGAAATGGA
TGGAATAAGCGAGTCAGTGAAGACCTGTAGCAGCTCTGCCTACCATGCAG
AATGTGAAAGTGTGACCACCCATGAAGACGATGTGCGTAGTCGGGTGGTG
GTGAAGGTGCGGATGAGGAAGAAGGACCGTGCCCTTGTGACTGCCACTGG
CGACCCAAGTGCTCCGTCTGAAGAACTAAGTCCCACTTCGAGCGATCTCT
TGCACAAGTTCGGCGATCGTCCGTTGCTGCTAGATGATGAATTGGATTAT
GGTTCTGGAGAAAGCAAGAGTAGCACTGAATCTCCTGTGGCTCCAATTCT
GCCAACAAATCCCGATGTGCAGGAATCAGAGGAGGATGTGTTCGCCCTGG
CTCCATTTAAATTACCAGTCGGAGTTCCTTTGAAACGAAAGACTAAACCC
AAAGCTAAGCCCAAGCCTTCGGAACCCGAGATGTGGACTTCAACGCCAGT
TAAAAGCGCCGCTGTCGGAGATCCTTCTACCAACTTTGCCAGTTTTCCAG
CGCAGCTCACGCCAACCAATAATGTGGGGAACTCTGCGCAGCTGGATGAG
TTCAATGAGCCAATTTTCAATCCCTTCCAGGAAAACGCACAGAACACGCA
ATCAGGGGAAACTAATCAATGCGACCTGTTCGGCTTGGAACCATTTCCAC
AGGTAATTCGTACAATCGAACAGAACCCACAGCACCACCAGATCCACCAA
TTTCCCAGCCACAACAACAATAACAATGTGATCAAAGTGCCCGCCTCCGT
ATCTGTTGCTCTTCCTGCCTCCGTTCCTGTATCTGTTTCCGTCAATTCGT
CTGCCCCACAACTGGTGACCATAAATCACTCGATTATTATCAACAAAACG
CCGGAGCCACCGATGAACTATAATAATAATAATAATAACCAGACTGCTAA
GTCGAGTGGCACCAGCAGTGTCTATGTGAATGTGCCGTCTTTCTCCAGCA
TGAGCACCAGTTCCTGCTCCATTAACCAGCCACAATCCTCACCAGCAGCT
GTGATTCCAGTTCAGGCACCTCTTCCAGTTCCAGTTCCTGCCCCTGTTTC
CGTTCCAGCCGTTCCAGTTCCAATACCAGCGGTCGTTACCCATCTGCGTC
CTTTGCTGCCCATTGCCGATAATGCGTATGTGCAAATCTCCCAAGATCGC
TGCTCAGATTTCACACCGGACGACGAGGAGGAACCCGTGGTGTTGCGTGA
TGCCGATGTGGTGGCAGACGGAATCGGTATACCTACCCCTGCGAAACCCA
AGAAGGAGAAGTCCAATCTGGCTGTAAGGGTTCTGCCGGGAAAGCTCACC
CAAAAGGTAAAGGGGCATTCGTACAAAAAAGTAAGCGCGGCTGCCCTTGG
ATCCACCAGTTCCCTTAGTTCCGGCAGCAAGCAGAAGCACCAGCGATTGC
AGTACCAGTCCCACGATGATGACGACGACGAACAGGATCAGGATGAGAAT
CGAGGTGCTGGAGGCGGCCGCAATTTCCAATCAAACACCATTCAAAATTC
TGCCAAAACCGGCTTCAGCAACATGAGCTTTGAGGACTTTCCCTCGGATC
AGGAAATGGATCGTCTGTCCAGGACCATTCCCTTCGAGGTGGTTAGAAAC
GAAAAGATGTTACTCGAGGCGGAGAAGAAGTTCGGCTCCCTCAAGCGACG
GAACAACTTGTTCTCATAAAAGCTTTCTAGACCAT
BS08452.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:19:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nak-RD | 4467 | CG10637-PD | 1614..4467 | 16..2869 | 14270 | 100 | Plus |
| Nak-RA | 4467 | CG10637-PA | 1614..4467 | 16..2869 | 14270 | 100 | Plus |
| Nak-RE | 2127 | CG10637-PE | 1614..2086 | 16..488 | 2365 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:19:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nak-RD | 5364 | CG10637-RD | 1943..4796 | 16..2869 | 14270 | 100 | Plus |
| Nak-RA | 5196 | CG10637-RA | 1943..4796 | 16..2869 | 14270 | 100 | Plus |
| Nak-RE | 4280 | CG10637-RE | 1943..2415 | 16..488 | 2365 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:19:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18958300..18960682 | 2869..487 | 11915 | 100 | Minus |
| 2L | 23513712 | 2L | 18963170..18963412 | 258..16 | 1215 | 100 | Minus |
| 2L | 23513712 | 2L | 18962885..18963115 | 488..258 | 1155 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:19:32 has no hits.
BS08452.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:50:20 Download gff for
BS08452.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nak-RB | 85..2938 | 16..2869 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:30:35 Download gff for
BS08452.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nak-RA | 1944..4794 | 17..2867 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:11:57 Download gff for
BS08452.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nak-RB | 86..2936 | 17..2867 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:15:52 Download gff for
BS08452.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nak-RA | 1944..4794 | 17..2867 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:15:52 Download gff for
BS08452.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18958302..18960680 | 489..2867 | 100 | <- | Minus |
| 2L | 18962885..18963115 | 258..488 | 100 | <- | Minus |
| 2L | 18963171..18963411 | 17..257 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:30:35 Download gff for
BS08452.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18962885..18963115 | 258..488 | 100 | <- | Minus |
| arm_2L | 18958302..18960680 | 489..2867 | 100 | <- | Minus |
| arm_2L | 18963171..18963411 | 17..257 | 100 | | Minus |
BS08452.pep Sequence
Translation from 16 to 2868
> BS08452.pep
MGDGQQTLASAASNPGIYASSTANSAAVSISELMKPGQTAVEKRVEAWNP
FEEEQPFSQMTEDHIFEAEFDKIRQRGSQGSITAKSASTTSTLTPTEQIP
SAVVAPVTAAPGAVPPPPIAAAVSPYPSQVSEDPFGSAPFSLPPGLREKA
SSLRKTGAKFIGVSSGGTGGGVATPIGLVAGGANTATSSNSSKWMLSPTL
EVSSEEKTSLISKLKTDSECGIPGAVGGAGEGVSGYVKLPVEDRNKYEKL
RSKDQPTSDDSDSEASEFFQQDSDEGGGGIFRQMQMVTSNLPETIHKIQQ
VAYHKVDKTAHLPIVKKLRDKTKKPTTAAHQAAQQLNLMAAAVAAQAEEA
AKAAESDGDSIGSASDLRAEDDDLFDENPRQTQAKQRRPLPTEMDGISES
VKTCSSSAYHAECESVTTHEDDVRSRVVVKVRMRKKDRALVTATGDPSAP
SEELSPTSSDLLHKFGDRPLLLDDELDYGSGESKSSTESPVAPILPTNPD
VQESEEDVFALAPFKLPVGVPLKRKTKPKAKPKPSEPEMWTSTPVKSAAV
GDPSTNFASFPAQLTPTNNVGNSAQLDEFNEPIFNPFQENAQNTQSGETN
QCDLFGLEPFPQVIRTIEQNPQHHQIHQFPSHNNNNNVIKVPASVSVALP
ASVPVSVSVNSSAPQLVTINHSIIINKTPEPPMNYNNNNNNQTAKSSGTS
SVYVNVPSFSSMSTSSCSINQPQSSPAAVIPVQAPLPVPVPAPVSVPAVP
VPIPAVVTHLRPLLPIADNAYVQISQDRCSDFTPDDEEEPVVLRDADVVA
DGIGIPTPAKPKKEKSNLAVRVLPGKLTQKVKGHSYKKVSAAALGSTSSL
SSGSKQKHQRLQYQSHDDDDDEQDQDENRGAGGGRNFQSNTIQNSAKTGF
SNMSFEDFPSDQEMDRLSRTIPFEVVRNEKMLLEAEKKFGSLKRRNNLFS
*
BS08452.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:57:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nak-PD | 1488 | CG10637-PD | 539..1488 | 1..950 | 4859 | 100 | Plus |
| Nak-PA | 1488 | CG10637-PA | 539..1488 | 1..950 | 4859 | 100 | Plus |
| Nak-PC | 698 | CG10637-PC | 539..697 | 1..159 | 797 | 99.4 | Plus |
| Nak-PE | 708 | CG10637-PE | 539..695 | 1..157 | 792 | 100 | Plus |
