Clone Sequence Records
BS08454.3prime Sequence
890 bp (862 high quality bases) assembled on 2006-01-10
> BS08454.3prime
ATGGTCTAGAAAGCTTCTACTCCCGACCGGGCTCAGCGTGGCGCTTGGAC
AGGAGATTGACGTCGGTCAGATACGTGTTCTTGTCGATGTTGTGCGGACC
GGGACCCGTGGGCATCCGCTCGTGGAGGCCGTGGAAGGAGTTGCGCAGAT
CCTCGAGGGAGTCGGCCAGGCCCTTCTTGATGCTGGCGAACTCGGTGGAC
ATGAGCGACAGCTTGCCCAGCAGATAGTTGAGGTTCTCGTCCATGTCGAT
CATGTGTTTCTTGGTCTCCTCCACGCGGCTGCCGAGACCCATCATGGTGA
TGAGAGTGCTGTTGTTGTAGCCATCGGAAGCGGACTGGATATCTCCGAGC
ATCAGCCGGCTCTGGCTGATCTCGCCGGCCATGATCTCGATGCGGTGCCA
CACCTGGTTCAGCTCCGTTTCCAGCAGTCCGCTGATGTTCTTGTTCGCCT
CCTGCTGGATGCTCACCACCGCTCCGTCCAGCGACGAGAAGCGCTCCTTC
AGCAGTCCGCTCAGCGTGGCCATTTCCTCCGCCAGCAGCTTGCCAACCCG
CTGCACCACGTTCAGTGTGCCGAAGTCCACCTTGCGCTGCGTGTCCAGCA
CGACCTCCGAGTTGGTCATCATGATGTTGTTGAACTTACCGAGCGCTTCG
AGTCCCTCGTTCAGCTTGGCATTGCTCTCGTTAGTCGAGGCGAAGTGCTT
GTTGAGAATGCCCACGTCCGCGGACAGCTGGCGAACGTCCGCCTGGATGT
TGGCCTCCGCCTGCTGCAGTCGCTCCGTGGCCTCCGTCGCAGCTGACTTC
TGTTCCACCGAGGACTCGCTCTTCAGCTGCGCCAGCGCATTCAGGGTATC
GTTGTTCAGTTCCTGGATGTAGGCGCGATCCGTCTCGCTC
BS08454.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:07:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5080-PB | 1665 | CG5080-RB | 792..1665 | 890..17 | 4370 | 100 | Minus |
| CG5080-PA | 1665 | CG5080-RA | 792..1665 | 890..17 | 4370 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:35:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5080-RC | 2350 | CG5080-RC | 1323..2197 | 890..16 | 4375 | 100 | Minus |
| CG5080-RA | 2617 | CG5080-RA | 1590..2464 | 890..16 | 4375 | 100 | Minus |
| CG5080-RB | 2007 | CG5080-RB | 980..1854 | 890..16 | 4375 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:35:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1160443..1161222 | 16..795 | 3900 | 100 | Plus |
| 2L | 23513712 | 2L | 1161290..1161387 | 793..890 | 490 | 100 | Plus |
Blast to na_te.dros performed 2015-02-11 11:35:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Max-element | 8556 | Max-element DME487856 8556bp Derived from AJ487856 (Rel. 71, Last updated, Version 1). | 7590..7644 | 512..566 | 113 | 67.3 | Plus |
BS08454.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:41:04 Download gff for
BS08454.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5080-PA | 792..1665 | 17..890 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:40:20 Download gff for
BS08454.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5080-PA | 792..1665 | 17..890 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 07:54:00 Download gff for
BS08454.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5080-RB | 980..1860 | 8..890 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:57:05 Download gff for
BS08454.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5080-RB | 980..1860 | 8..890 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:57:05 Download gff for
BS08454.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1160437..1161219 | 8..792 | 99 | <- | Plus |
| 2L | 1161290..1161387 | 793..890 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 07:54:00 Download gff for
BS08454.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1160437..1161219 | 8..792 | 99 | <- | Plus |
| arm_2L | 1161290..1161387 | 793..890 | 100 | | Plus |
BS08454.5prime Sequence
918 bp (840 high quality bases) assembled on 2006-01-10
> BS08454.5prime
GAAGTTATCAGTCGACATGGCCGGAGGAAGTCGCCCTCTCCAATTAGTTC
TCCTGGTCCTAGTTGCGCTCGCCCAATGGCAACCCATCGCCGCTGGATTG
GTCTCCAACGAGGAGCTGCGCGGAACTATCCAGTCGCTGATCTACTCCTA
CAATCAGCTGGACAATAAGCTGGAGCGGCACGAGCATCGCGAGCGTGCGT
TGGGCGAGCTGCTCAAGAAGGCGCTGCAGTCGCTCCAGAAGGGCCAGAAG
AGCCTGGAGCCCATCAATGGGATCTTCGGGCGCCTGGACGAGCGGGTCAG
CCAGATAGAGACCATGCTGATCACGCAAGAGGAGAAGTACAACTCGCAGT
CGGACCGCTTCAACCAGGCAACGGAGCACATGTTCAAGTGGATGCGGGAG
AACGACGAGTGCTTCAAGAGGCCGCCGGTCAGCGCCAACATGATCGCTCC
CCCAGCCGCGGCCGCCCCACCCGCCATTCCCAAGGAGTTCCTGGAGGATC
AGAAGCGCCTCAACGCCAAGCTGCTCGAGGAGATCCAGAAGTTGTCGGCC
AGCGTGGCCGCCCTCAAGGAGAGCAGCCAGAAGGCGTCCGATCAGACCCA
GAAGCGCCTCGAGGGTCTGCCCAAGGCACCGGAGCTGCTGTCCCAGATCG
AAGCCAAGCTGCAAGAGCACGCGGCCAGCGTGACCACCGCCGCTCCACCG
AAGAACGCTGAGTTCGAGGCCCAACTCCTGGAGCGTCTCACCTCGCTGGG
CGGCCAGGTGAGCTCTCTAAGCGAGACTGTGCAGCGACCAGCTGCTCCGG
TTGGCCTGAGCGAGACGGATCGCGCCTACATCCAGGAACTGAACAACGAT
ACCCTGAATGCGCTGGCGCAGCTGAAGAGCGAGTCCTCGGTGGAACAGAA
GTCAGCTGCGACGGAAGC
BS08454.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:07:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5080-PB | 1665 | CG5080-RB | 1..899 | 17..915 | 4495 | 100 | Plus |
| CG5080-PA | 1665 | CG5080-RA | 1..899 | 17..915 | 4495 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:48:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5080-RC | 2350 | CG5080-RC | 532..1430 | 17..915 | 4495 | 100 | Plus |
| CG5080-RA | 2617 | CG5080-RA | 799..1697 | 17..915 | 4495 | 100 | Plus |
| CG5080-RB | 2007 | CG5080-RB | 189..1087 | 17..915 | 4495 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:48:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1161290..1161870 | 905..325 | 2905 | 100 | Minus |
| 2L | 23513712 | 2L | 1161927..1162146 | 325..106 | 1100 | 100 | Minus |
| 2L | 23513712 | 2L | 1163000..1163088 | 105..17 | 445 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:48:56 has no hits.
BS08454.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:41:05 Download gff for
BS08454.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5080-PA | 1..902 | 17..918 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:40:22 Download gff for
BS08454.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5080-PA | 1..902 | 17..918 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:11:23 Download gff for
BS08454.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5080-RB | 185..1090 | 9..918 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:35:26 Download gff for
BS08454.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5080-RB | 185..1090 | 9..918 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:35:26 Download gff for
BS08454.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1161287..1161869 | 326..908 | 99 | <- | Minus |
| 2L | 1161927..1162146 | 106..325 | 100 | <- | Minus |
| 2L | 1163000..1163092 | 9..105 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:11:23 Download gff for
BS08454.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1161287..1161869 | 326..908 | 99 | <- | Minus |
| arm_2L | 1161927..1162146 | 106..325 | 100 | <- | Minus |
| arm_2L | 1163000..1163092 | 9..105 | 95 | | Minus |
BS08454.complete Sequence
1697 bp (1697 high quality bases) assembled on 2006-01-18
GenBank Submission: FJ636166
> BS08454.complete
GAAGTTATCAGTCGACATGGCCGGAGGAAGTCGCCCTCTCCAATTAGTTC
TCCTGGTCCTAGTTGCGCTCGCCCAATGGCAACCCATCGCCGCTGGATTG
GTCTCCAACGAGGAGCTGCGCGGAACTATCCAGTCGCTGATCTACTCCTA
CAATCAGCTGGACAATAAGCTGGAGCGGCACGAGCATCGCGAGCGTGCGT
TGGGCGAGCTGCTCAAGAAGGCGCTGCAGTCGCTCCAGAAGGGCCAGAAG
AGCCTGGAGCCCATCAATGGGATCTTCGGGCGCCTGGACGAGCGGGTCAG
CCAGATAGAGACCATGCTGATCACGCAAGAGGAGAAGTACAACTCGCAGT
CGGACCGCTTCAACCAGGCAACGGAGCACATGTTCAAGTGGATGCGGGAG
AACGACGAGTGCTTCAAGAGGCCGCCGGTCAGCGCCAACATGATCGCTCC
CCCAGCCGCGGCCGCCCCACCCGCCATTCCCAAGGAGTTCCTGGAGGATC
AGAAGCGCCTCAACGCCAAGCTGCTCGAGGAGATCCAGAAGTTGTCGGCC
AGCGTGGCCGCCCTCAAGGAGAGCAGCCAGAAGGCGTCCGATCAGACCCA
GAAGCGCCTCGAGGGTCTGCCCAAGGCACCGGAGCTGCTGTCCCAGATCG
AAGCCAAGCTGCAAGAGCACGCGGCCAGCGTGACCACCGCCGCTCCACCG
AAGAACGCTGAGTTCGAGGCCCAACTCCTGGAGCGTCTCACCTCGCTGGG
CGGCCAGGTGAGCTCTCTAAGCGAGACTGTGCAGCGACCAGCTGCTCCGG
TTGGCCTGAGCGAGACGGATCGCGCCTACATCCAGGAACTGAACAACGAT
ACCCTGAATGCGCTGGCGCAGCTGAAGAGCGAGTCCTCGGTGGAACAGAA
GTCAGCTGCGACGGAGGCCACGGAGCGACTGCAGCAGGCGGAGGCCAACA
TCCAGGCGGACGTTCGCCAGCTGTCCGCGGACGTGGGCATTCTCAACAAG
CACTTCGCCTCGACTAACGAGAGCAATGCCAAGCTGAACGAGGGACTCGA
AGCGCTCGGTAAGTTCAACAACATCATGATGACCAACTCGGAGGTCGTGC
TGGACACGCAGCGCAAGGTGGACTTCGGCACACTGAACGTGGTGCAGCGG
GTTGGCAAGCTGCTGGCGGAGGAAATGGCCACGCTGAGCGGACTGCTGAA
GGAGCGCTTCTCGTCGCTGGACGGAGCGGTGGTGAGCATCCAGCAGGAGG
CGAACAAGAACATCAGCGGACTGCTGGAAACGGAGCTGAACCAGGTGTGG
CACCGCATCGAGATCATGGCCGGCGAGATCAGCCAGAGCCGGCTGATGCT
CGGAGATATCCAGTCCGCTTCCGATGGCTACAACAACAGCACTCTCATCA
CCATGATGGGTCTCGGCAGCCGCGTGGAGGAGACCAAGAAACACATGATC
GACATGGACGAGAACCTCAACTATCTGCTGGGCAAGCTGTCGCTCATGTC
CACCGAGTTCGCCAGCATCAAGAAGGGCCTGGCCGACTCCCTCGAGGATC
TGCGCAACTCCTTCCACGGCCTCCACGAGCGGATGCCCACGGGTCCCGGT
CCGCACAACATCGACAAGAACACGTATCTGACCGACGTCAATCTCCTGTC
CAAGCGCCACGCTGAGCCCGGTCGGGAGTAGAAGCTTTCTAGACCAT
BS08454.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:41:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5080-RC | 1665 | CG5080-PC | 1..1665 | 17..1681 | 8325 | 100 | Plus |
| CG5080-RA | 1665 | CG5080-PA | 1..1665 | 17..1681 | 8325 | 100 | Plus |
| CG5080-RB | 1665 | CG5080-PB | 1..1665 | 17..1681 | 8325 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:41:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5080-RC | 2350 | CG5080-RC | 532..2197 | 17..1682 | 8330 | 100 | Plus |
| CG5080-RA | 2617 | CG5080-RA | 799..2464 | 17..1682 | 8330 | 100 | Plus |
| CG5080-RB | 2007 | CG5080-RB | 189..1854 | 17..1682 | 8330 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:41:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1160443..1161222 | 1682..903 | 3900 | 100 | Minus |
| 2L | 23513712 | 2L | 1161290..1161870 | 905..325 | 2905 | 100 | Minus |
| 2L | 23513712 | 2L | 1161927..1162146 | 325..106 | 1100 | 100 | Minus |
| 2L | 23513712 | 2L | 1163000..1163088 | 105..17 | 445 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 13:41:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Max-element | 8556 | Max-element DME487856 8556bp Derived from AJ487856 (Rel. 71, Last updated, Version 1). | 7590..7644 | 1186..1132 | 113 | 67.3 | Minus |
BS08454.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:03:10 Download gff for
BS08454.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5080-RA | 1..1665 | 17..1681 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:41:05 Download gff for
BS08454.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5080-RA | 246..1921 | 9..1690 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:32:06 Download gff for
BS08454.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5080-RB | 189..1853 | 17..1681 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:03:10 Download gff for
BS08454.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5080-RA | 246..1921 | 9..1690 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:24:25 Download gff for
BS08454.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5080-RB | 189..1853 | 17..1681 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:24:25 Download gff for
BS08454.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1160444..1161219 | 906..1681 | 100 | <- | Minus |
| 2L | 1161290..1161869 | 326..905 | 100 | <- | Minus |
| 2L | 1161927..1162146 | 106..325 | 100 | <- | Minus |
| 2L | 1163000..1163088 | 17..105 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:32:06 Download gff for
BS08454.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1160444..1161219 | 906..1681 | 100 | <- | Minus |
| arm_2L | 1161290..1161869 | 326..905 | 100 | <- | Minus |
| arm_2L | 1161927..1162146 | 106..325 | 100 | <- | Minus |
| arm_2L | 1163000..1163088 | 17..105 | 100 | | Minus |
BS08454.pep Sequence
Translation from 16 to 1680
> BS08454.pep
MAGGSRPLQLVLLVLVALAQWQPIAAGLVSNEELRGTIQSLIYSYNQLDN
KLERHEHRERALGELLKKALQSLQKGQKSLEPINGIFGRLDERVSQIETM
LITQEEKYNSQSDRFNQATEHMFKWMRENDECFKRPPVSANMIAPPAAAA
PPAIPKEFLEDQKRLNAKLLEEIQKLSASVAALKESSQKASDQTQKRLEG
LPKAPELLSQIEAKLQEHAASVTTAAPPKNAEFEAQLLERLTSLGGQVSS
LSETVQRPAAPVGLSETDRAYIQELNNDTLNALAQLKSESSVEQKSAATE
ATERLQQAEANIQADVRQLSADVGILNKHFASTNESNAKLNEGLEALGKF
NNIMMTNSEVVLDTQRKVDFGTLNVVQRVGKLLAEEMATLSGLLKERFSS
LDGAVVSIQQEANKNISGLLETELNQVWHRIEIMAGEISQSRLMLGDIQS
ASDGYNNSTLITMMGLGSRVEETKKHMIDMDENLNYLLGKLSLMSTEFAS
IKKGLADSLEDLRNSFHGLHERMPTGPGPHNIDKNTYLTDVNLLSKRHAE
PGRE*
BS08454.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:21:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5080-PC | 554 | CG5080-PC | 1..554 | 1..554 | 2754 | 100 | Plus |
| CG5080-PA | 554 | CG5080-PA | 1..554 | 1..554 | 2754 | 100 | Plus |
| CG5080-PB | 554 | CG5080-PB | 1..554 | 1..554 | 2754 | 100 | Plus |
