Clone BS08457 Report

Search the DGRC for BS08457

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:84
Well:57
Vector:pDNR-Dual
Associated Gene/TranscriptInx3-RA
Protein status:BS08457.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08457.3prime Sequence

837 bp (833 high quality bases) assembled on 2006-01-10

> BS08457.3prime
ATGGTCTAGAAAGCTTTCATGTCTCCGTCTCCTTGCCACCGCCGAAGGTC
TCCACGGGCGGATAAATCGGATGGCTGATGCGGTTCATTTCAAGGGTCGA
TGGTGCGGATGGTGTTCGGGATGCTCCTAGCAGACCGCAGAGCTGCTGCA
GCATGTCACTGTACGATCTTGTGCTGAGGTTCTGGCTCAGGAAGTGCAAG
ATCAGGAAGTCACCAATCTCCAAACGCCTAACCAGTCCGGCGATTTCCTT
CCGTTGTGCCGAGCGATAAGAACGCTTGATGATGGTCTCCCGAGTGGTGG
GCATCATGATAACCACCAGTGAATAGAGCACAGCCACGCCGGAGATGGTG
GCCAAGATGATAAACCAGAACCACAGGAAGATGTAGATCTTCTCGTTGAG
GATATTCAGTGCCAGCACACAGAGAGTGTCGTGTTTCTGGACCGATCCAC
TGGGACCGAACTTGTGGAACGTGCACTTGGTGAGCCGGGGAAAGATCTCG
ATCATCGGATCGAAGCGCTTGTCCTGATCCATGTTGGAGAACTTGAGCAC
ATCCGTACCGTAGGACATGAAAGCACCGCCCAGAAACTTATCCACCATAA
AGATATTCACAATCACGTTGATAAAGTTAAGCAGTTCGCAGAAAAAGTAT
GCGAACGAGTAGCCGTTGTGGGTGTTCAAACTGTTCACGAAATACTTGAG
GATCCGGTCCTGGCGATCACGCCGATAGTCATCCGGCACACTGACCATGC
CGCGCAGTCCATCGGTGATCATGCGGATCTTGCCGTCTTCCATGTTCTTC
CAAACCCAGTGGGGCACGTAGAACATGAGCCCCTGGA

BS08457.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:07:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG1448-PA 1188 inx3-RA 368..1188 837..17 4105 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:02:27
Subject Length Description Subject Range Query Range Score Percent Strand
Inx3-RC 1652 CG1448-RC 508..1328 837..17 4105 100 Minus
Inx3-RB 2136 CG1448-RB 461..1281 837..17 4105 100 Minus
Inx3-RA 1605 CG1448-RA 461..1281 837..17 4105 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:02:19
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 28854944..28855409 370..835 2330 100 Plus
3R 32079331 3R 28854461..28854663 17..219 1015 100 Plus
3R 32079331 3R 28854723..28854884 211..372 780 98.8 Plus
X 23542271 X 6999832..6999959 483..356 235 78.9 Minus
X 23542271 X 6974773..6974900 363..490 220 78.1 Plus
X 23542271 X 6992243..6992360 364..481 185 77.1 Plus
Blast to na_te.dros performed on 2015-02-10 23:02:23 has no hits.

BS08457.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:41:10 Download gff for BS08457.3prime
Subject Subject Range Query Range Percent Splice Strand
inx3-PA 369..1188 17..836 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:40:30 Download gff for BS08457.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1448-PA 369..1188 17..836 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:02:33 Download gff for BS08457.3prime
Subject Subject Range Query Range Percent Splice Strand
Inx3-RA 462..1283 13..836 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:17:47 Download gff for BS08457.3prime
Subject Subject Range Query Range Percent Splice Strand
Inx3-RA 462..1283 13..836 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:17:47 Download gff for BS08457.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 28854459..28854661 13..217 99 <- Plus
3R 28854730..28854883 218..371 100 <- Plus
3R 28854946..28855409 372..836 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:02:33 Download gff for BS08457.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 24680181..24680383 13..217 99 <- Plus
arm_3R 24680452..24680605 218..371 100 <- Plus
arm_3R 24680668..24681131 372..836 99   Plus

BS08457.5prime Sequence

915 bp (782 high quality bases) assembled on 2006-01-10

> BS08457.5prime
GAAGTTATCAGTCGACATGGCGGTCTTTGGCATGGTCTCGGCTGTGTCCG
GCTTTATCAAGATACGCTATCTGCTGGACAAGGCGGTCATCGACAACATG
GTTTTCCGCTGCCACTACAGGATCACGACGGCCATTCTGTTCACTTGTTG
CATCATCGTCACCGCAAACAATCTGATCGGCGATCCCATAAGTTGCATCA
ACGACGGCGCCATTCCGATGCACGTAATCAACACCTTCTGCTGGATCACC
TACACGTACACGATACCTGGCCAGCAGCATCGGCAAATCGGAACGGACGT
GGCTGGTCCGGGATTGGGCAATGAGTACGGCCAGGAGAAGCGCTATCACA
GCTACTATCAATGGGTGCCATTCGTGCTATTCTTCCAGGGGCTCATGTTC
TACGTGCCCCACTGGGTTTGGAAGAACATGGAAGACGGCAAGATCCGCAT
GATCACCGATGGACTGCGCGGCATGGTCAGTGTGCCGGATGACTATCGGC
GTGATCGCCAGGACCGGATCCTCAAGTATTTCGTGAACAGTTTGAACACC
CACAACGGCTACTCGTTCGCATACTTTTTCTGCGAACTGCTTAACTTTAT
CAACGTGATTGTGAATATCTTTATGGTGGATAAGTTTCTGGGCGGTGCTT
TCATGTCCTACGGTACGGATGTGCTCAAGTTCTCCAACATGGATCAGGAC
AAGCGCTTCGATCCGATGATCGAGATCTTTCCCCGGCTCACCAAGTGCAC
GTTCCACAAGTTCGGTCCCAGTGGATCGGTCCAGAAACACGACACTCTCT
GTGTGCTGGCACTGAATATCCTCAACGAGAAGATCTACATCTTCCTGTGG
TTCTGGTTATCATCTTGGCCACCATCTCCGGCGTGGCTGTGCTCTATTCA
CTGGTGGGTATCATG

BS08457.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:07:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG1448-PA 1188 inx3-RA 1..842 17..858 4210 100 Plus
CG1448-PA 1188 inx3-RA 842..900 857..915 270 98.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:50:11
Subject Length Description Subject Range Query Range Score Percent Strand
Inx3-RC 1652 CG1448-RC 139..1040 15..915 4470 99.8 Plus
Inx3-RB 2136 CG1448-RB 92..993 15..915 4470 99.8 Plus
Inx3-RA 1605 CG1448-RA 92..993 15..915 4470 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:50:06
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 28854944..28855416 851..379 2335 99.6 Minus
3R 32079331 3R 28855732..28855942 389..179 1055 100 Minus
3R 32079331 3R 28857142..28857307 180..15 830 100 Minus
3R 32079331 3R 28854817..28854875 915..857 280 98.3 Minus
X 23542271 X 6974773..6974900 858..731 220 78.1 Minus
X 23542271 X 6992243..6992360 857..740 185 77.1 Minus
Blast to na_te.dros performed on 2015-02-11 10:50:09 has no hits.

BS08457.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:41:11 Download gff for BS08457.5prime
Subject Subject Range Query Range Percent Splice Strand
inx3-PA 1..900 17..915 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:40:31 Download gff for BS08457.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1448-PA 1..900 17..915 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:11:31 Download gff for BS08457.5prime
Subject Subject Range Query Range Percent Splice Strand
Inx3-RA 87..993 9..915 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:38:16 Download gff for BS08457.5prime
Subject Subject Range Query Range Percent Splice Strand
Inx3-RA 87..993 9..915 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:38:16 Download gff for BS08457.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 28857143..28857312 9..179 98   Minus
3R 28854946..28855406 389..849 100 <- Minus
3R 28855733..28855941 180..388 100 <- Minus
3R 28854817..28854883 850..915 97 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:11:31 Download gff for BS08457.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 24680539..24680605 850..915 97 <- Minus
arm_3R 24680668..24681128 389..849 100 <- Minus
arm_3R 24681455..24681663 180..388 100 <- Minus
arm_3R 24682865..24683034 9..179 98   Minus

BS08457.complete Sequence

1220 bp (1220 high quality bases) assembled on 2006-01-18

GenBank Submission: FJ636167

> BS08457.complete
GAAGTTATCAGTCGACATGGCGGTCTTTGGCATGGTCTCGGCTGTGTCCG
GCTTTATCAAGATACGCTATCTGCTGGACAAGGCGGTCATCGACAACATG
GTTTTCCGCTGCCACTACAGGATCACGACGGCCATTCTGTTCACTTGTTG
CATCATCGTCACCGCAAACAATCTGATCGGCGATCCCATAAGTTGCATCA
ACGACGGCGCCATTCCGATGCACGTAATCAACACCTTCTGCTGGATCACC
TACACGTACACGATACCTGGCCAGCAGCATCGGCAAATCGGAACGGACGT
GGCTGGTCCGGGATTGGGCAATGAGTACGGCCAGGAGAAGCGCTATCACA
GCTACTATCAATGGGTGCCATTCGTGCTATTCTTCCAGGGGCTCATGTTC
TACGTGCCCCACTGGGTTTGGAAGAACATGGAAGACGGCAAGATCCGCAT
GATCACCGATGGACTGCGCGGCATGGTCAGTGTGCCGGATGACTATCGGC
GTGATCGCCAGGACCGGATCCTCAAGTATTTCGTGAACAGTTTGAACACC
CACAACGGCTACTCGTTCGCATACTTTTTCTGCGAACTGCTTAACTTTAT
CAACGTGATTGTGAATATCTTTATGGTGGATAAGTTTCTGGGCGGTGCTT
TCATGTCCTACGGTACGGATGTGCTCAAGTTCTCCAACATGGATCAGGAC
AAGCGCTTCGATCCGATGATCGAGATCTTTCCCCGGCTCACCAAGTGCAC
GTTCCACAAGTTCGGTCCCAGTGGATCGGTCCAGAAACACGACACTCTCT
GTGTGCTGGCACTGAATATCCTCAACGAGAAGATCTACATCTTCCTGTGG
TTCTGGTTTATCATCTTGGCCACCATCTCCGGCGTGGCTGTGCTCTATTC
ACTGGTGGTTATCATGATGCCCACCACTCGGGAGACCATCATCAAGCGTT
CTTATCGCTCGGCACAACGGAAGGAAATCGCCGGACTGGTTAGGCGTTTG
GAGATTGGTGACTTCCTGATCTTGCACTTCCTGAGCCAGAACCTCAGCAC
AAGATCGTACAGTGACATGCTGCAGCAGCTCTGCGGTCTGCTAGGAGCAT
CCCGAACACCATCCGCACCATCGACCCTTGAAATGAACCGCATCAGCCAT
CCGATTTATCCGCCCGTGGAGACCTTCGGCGGTGGCAAGGAGACGGAGAC
ATGAAAGCTTTCTAGACCAT

BS08457.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:41:47
Subject Length Description Subject Range Query Range Score Percent Strand
Inx3-RC 1188 CG1448-PC 1..1188 17..1204 5940 100 Plus
Inx3-RB 1188 CG1448-PB 1..1188 17..1204 5940 100 Plus
Inx3-RA 1188 CG1448-PA 1..1188 17..1204 5940 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:41:48
Subject Length Description Subject Range Query Range Score Percent Strand
Inx3-RC 1652 CG1448-RC 139..1328 15..1204 5950 100 Plus
Inx3-RB 2136 CG1448-RB 92..1281 15..1204 5950 100 Plus
Inx3-RA 1605 CG1448-RA 92..1281 15..1204 5950 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:41:45
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 28854944..28855416 851..379 2335 99.6 Minus
3R 32079331 3R 28855732..28855942 389..179 1055 100 Minus
3R 32079331 3R 28854461..28854663 1204..1002 1015 100 Minus
3R 32079331 3R 28857142..28857307 180..15 830 100 Minus
3R 32079331 3R 28854723..28854884 1010..849 780 98.8 Minus
X 23542271 X 6999832..6999959 738..865 235 78.9 Plus
X 23542271 X 6974773..6974900 858..731 220 78.1 Minus
X 23542271 X 6992243..6992360 857..740 185 77.1 Minus
Blast to na_te.dros performed on 2014-11-27 16:41:46 has no hits.

BS08457.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:03:11 Download gff for BS08457.complete
Subject Subject Range Query Range Percent Splice Strand
inx3-RA 1..1188 17..1204 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:41:07 Download gff for BS08457.complete
Subject Subject Range Query Range Percent Splice Strand
inx3-RA 66..1262 9..1208 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:54:19 Download gff for BS08457.complete
Subject Subject Range Query Range Percent Splice Strand
Inx3-RA 94..1280 17..1203 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:03:11 Download gff for BS08457.complete
Subject Subject Range Query Range Percent Splice Strand
inx3-RA 66..1262 9..1208 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:24:34 Download gff for BS08457.complete
Subject Subject Range Query Range Percent Splice Strand
Inx3-RA 94..1280 17..1203 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:24:34 Download gff for BS08457.complete
Subject Subject Range Query Range Percent Splice Strand
3R 28854462..28854661 1004..1203 100 <- Minus
3R 28854730..28854883 850..1003 100 <- Minus
3R 28854946..28855406 389..849 100 <- Minus
3R 28855733..28855941 180..388 100 <- Minus
3R 28857143..28857305 17..179 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:54:19 Download gff for BS08457.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 24680184..24680383 1004..1203 100 <- Minus
arm_3R 24680452..24680605 850..1003 100 <- Minus
arm_3R 24680668..24681128 389..849 100 <- Minus
arm_3R 24681455..24681663 180..388 100 <- Minus
arm_3R 24682865..24683027 17..179 100   Minus

BS08457.pep Sequence

Translation from 16 to 1203

> BS08457.pep
MAVFGMVSAVSGFIKIRYLLDKAVIDNMVFRCHYRITTAILFTCCIIVTA
NNLIGDPISCINDGAIPMHVINTFCWITYTYTIPGQQHRQIGTDVAGPGL
GNEYGQEKRYHSYYQWVPFVLFFQGLMFYVPHWVWKNMEDGKIRMITDGL
RGMVSVPDDYRRDRQDRILKYFVNSLNTHNGYSFAYFFCELLNFINVIVN
IFMVDKFLGGAFMSYGTDVLKFSNMDQDKRFDPMIEIFPRLTKCTFHKFG
PSGSVQKHDTLCVLALNILNEKIYIFLWFWFIILATISGVAVLYSLVVIM
MPTTRETIIKRSYRSAQRKEIAGLVRRLEIGDFLILHFLSQNLSTRSYSD
MLQQLCGLLGASRTPSAPSTLEMNRISHPIYPPVETFGGGKETET*

BS08457.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:21:23
Subject Length Description Subject Range Query Range Score Percent Strand
Inx3-PC 395 CG1448-PC 1..395 1..395 2103 100 Plus
Inx3-PB 395 CG1448-PB 1..395 1..395 2103 100 Plus
Inx3-PA 395 CG1448-PA 1..395 1..395 2103 100 Plus
Inx2-PD 367 CG4590-PD 1..349 3..355 894 46.2 Plus
Inx2-PC 367 CG4590-PC 1..349 3..355 894 46.2 Plus