Clone Sequence Records
BS08459.3prime Sequence
609 bp (608 high quality bases) assembled on 2006-01-10
> BS08459.3prime
ATGGTCTAGAAAGCTTTTAGAGCAGGGCGCACTTGCGCTTGGACTTGGGC
TGCAGCACGGGGCACAAAACCGACCGGATGGCCTCGTCGAAAACGGTTTT
CAGACCCTTCTGCGTCAGGGCCGAGCACTCCAGATACTTGACCGCTCCGA
TTTCCTTGGCCATGGCCAGGCCCTGCGGATAGGTGATGGGCGCCAGTTTC
TTGTCCCTCAGCTTTTCGATTGTGTTCTTGTCGTCGCGCAAATCCAGCTT
GGTGCCCACCAGGATGATGGGCGTGCTGGGGCAGTGGTGGCGCACCTCCG
GATACCACTTGGCCCGCACGTTCTCGAACGATGCCGGATTCACCAGCGAG
AAGCAGATGAGGAAGACATCGGTCTGGGGATAAGACAGTGGCCTCAGTCG
GTCGTAGTCCTCCTGCCCGGCCGTATCCCACAGGCCCAGGTTGATGGGCT
TGGCGTCCACCATCACGTTGGCCGAGTAGTTGTCGAACACGGTGGGTATG
TACTCGCCGGGAAAGGCATTGGTCGTGTAGCTGATCAGCAGGCAGGTCTT
TCCCACGGCTCCGTCGCCCACGACGACGCACTTGATCGCCTGCATGTCGA
CTGATAACT
BS08459.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:07:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2248-PA | 579 | Rac1-RA | 1..579 | 595..17 | 2895 | 100 | Minus |
CG8556-PA | 579 | Rac2-RA | 25..206 | 571..390 | 510 | 91.2 | Minus |
CG8556-PA | 579 | Rac2-RA | 451..518 | 145..78 | 215 | 92.6 | Minus |
CG8556-PA | 579 | Rac2-RA | 226..305 | 370..291 | 175 | 88.7 | Minus |
CG8416-PB | 579 | Rho1-RB | 170..201 | 432..401 | 160 | 100 | Minus |
CG8416-PC | 579 | Rho1-RC | 170..201 | 432..401 | 160 | 100 | Minus |
CG8416-PD | 579 | Rho1-RD | 170..201 | 432..401 | 160 | 100 | Minus |
CG8416-PE | 579 | Rho1-RE | 170..201 | 432..401 | 160 | 100 | Minus |
CG8416-PF | 579 | Rho1-RF | 170..201 | 432..401 | 160 | 100 | Minus |
CG8416-PG | 579 | Rho1-RG | 170..201 | 432..401 | 160 | 100 | Minus |
CG8416-PA | 579 | Rho1-RA | 170..201 | 432..401 | 160 | 100 | Minus |
CG12530-PA | 576 | Cdc42-RA | 10..59 | 586..537 | 150 | 92 | Minus |
CG12530-PB | 576 | Cdc42-RB | 10..59 | 586..537 | 150 | 92 | Minus |
CG34104-PA | 1296 | CG34104-RA | 1175..1217 | 588..546 | 140 | 93 | Minus |
CG34104-PB | 1749 | CG34104-RB | 1175..1217 | 588..546 | 140 | 93 | Minus |
CG12530-PA | 576 | Cdc42-RA | 464..520 | 132..76 | 135 | 89.4 | Minus |
CG12530-PB | 576 | Cdc42-RB | 464..520 | 132..76 | 135 | 89.4 | Minus |
CG5588-PB | 588 | Mtl-RB | 166..212 | 439..393 | 135 | 91.4 | Minus |
CG5588-PA | 588 | Mtl-RA | 166..212 | 439..393 | 135 | 91.4 | Minus |
CG5588-PC | 588 | Mtl-RC | 166..212 | 439..393 | 135 | 91.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:21:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rac1-RB | 1805 | CG2248-RB | 337..919 | 596..14 | 2915 | 100 | Minus |
Rac1-RA | 1718 | CG2248-RA | 337..919 | 596..14 | 2915 | 100 | Minus |
Rac2-RB | 2429 | CG8556-RB | 680..1198 | 596..78 | 1545 | 86.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:21:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1301765..1302347 | 14..596 | 2915 | 100 | Plus |
3L | 28110227 | 3L | 7433993..7434511 | 78..596 | 1545 | 86.5 | Plus |
X | 23542271 | X | 19697956..19698235 | 597..318 | 455 | 77.5 | Minus |
X | 23542271 | X | 19698352..19698538 | 262..76 | 230 | 74.9 | Minus |
3R | 32079331 | 3R | 27638122..27638297 | 439..264 | 220 | 75 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:21:16 has no hits.
BS08459.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:41:14 Download gff for
BS08459.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rac1-PA | 1..579 | 17..595 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:40:36 Download gff for
BS08459.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2248-PA | 1..579 | 17..595 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:24:00 Download gff for
BS08459.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rac1-RA | 331..927 | 4..600 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:50:48 Download gff for
BS08459.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rac1-RA | 331..927 | 4..600 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:50:48 Download gff for
BS08459.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1301757..1302353 | 4..600 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:24:00 Download gff for
BS08459.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1301757..1302353 | 4..600 | 98 | | Plus |
BS08459.5prime Sequence
609 bp (608 high quality bases) assembled on 2006-01-10
> BS08459.5prime
GAAGTTATCAGTCGACATGCAGGCGATCAAGTGCGTCGTCGTGGGCGACG
GAGCCGTGGGAAAGACCTGCCTGCTGATCAGCTACACGACCAATGCCTTT
CCCGGCGAGTACATACCCACCGTGTTCGACAACTACTCGGCCAACGTGAT
GGTGGACGCCAAGCCCATCAACCTGGGCCTGTGGGATACGGCCGGGCAGG
AGGACTACGACCGACTGAGGCCACTGTCTTATCCCCAGACCGATGTCTTC
CTCATCTGCTTCTCGCTGGTGAATCCGGCATCGTTCGAGAACGTGCGGGC
CAAGTGGTATCCGGAGGTGCGCCACCACTGCCCCAGCACGCCCATCATCC
TGGTGGGCACCAAGCTGGATTTGCGCGACGACAAGAACACAATCGAAAAG
CTGAGGGACAAGAAACTGGCGCCCATCACCTATCCGCAGGGCCTGGCCAT
GGCCAAGGAAATCGGAGCGGTCAAGTATCTGGAGTGCTCGGCCCTGACGC
AGAAGGGTCTGAAAACCGTTTTCGACGAGGCCATCCGGTCGGTTTTGTGC
CCCGTGCTGCAGCCCAAGTCCAAGCGCAAGTGCGCCCTGCTCTAAAAGCT
TTCTAGACC
BS08459.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:07:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2248-PA | 579 | Rac1-RA | 1..579 | 17..595 | 2895 | 100 | Plus |
CG8556-PA | 579 | Rac2-RA | 25..206 | 41..222 | 510 | 91.2 | Plus |
CG8556-PA | 579 | Rac2-RA | 451..518 | 467..534 | 215 | 92.6 | Plus |
CG8556-PA | 579 | Rac2-RA | 226..305 | 242..321 | 175 | 88.7 | Plus |
CG8416-PB | 579 | Rho1-RB | 170..201 | 180..211 | 160 | 100 | Plus |
CG8416-PC | 579 | Rho1-RC | 170..201 | 180..211 | 160 | 100 | Plus |
CG8416-PD | 579 | Rho1-RD | 170..201 | 180..211 | 160 | 100 | Plus |
CG8416-PE | 579 | Rho1-RE | 170..201 | 180..211 | 160 | 100 | Plus |
CG8416-PF | 579 | Rho1-RF | 170..201 | 180..211 | 160 | 100 | Plus |
CG8416-PG | 579 | Rho1-RG | 170..201 | 180..211 | 160 | 100 | Plus |
CG8416-PA | 579 | Rho1-RA | 170..201 | 180..211 | 160 | 100 | Plus |
CG12530-PA | 576 | Cdc42-RA | 10..59 | 26..75 | 150 | 92 | Plus |
CG12530-PB | 576 | Cdc42-RB | 10..59 | 26..75 | 150 | 92 | Plus |
CG34104-PA | 1296 | CG34104-RA | 1175..1217 | 24..66 | 140 | 93 | Plus |
CG34104-PB | 1749 | CG34104-RB | 1175..1217 | 24..66 | 140 | 93 | Plus |
CG12530-PA | 576 | Cdc42-RA | 464..520 | 480..536 | 135 | 89.4 | Plus |
CG12530-PB | 576 | Cdc42-RB | 464..520 | 480..536 | 135 | 89.4 | Plus |
CG5588-PB | 588 | Mtl-RB | 166..212 | 173..219 | 135 | 91.4 | Plus |
CG5588-PA | 588 | Mtl-RA | 166..212 | 173..219 | 135 | 91.4 | Plus |
CG5588-PC | 588 | Mtl-RC | 166..212 | 173..219 | 135 | 91.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 02:53:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rac1-RB | 1805 | CG2248-RB | 337..919 | 16..598 | 2915 | 100 | Plus |
Rac1-RA | 1718 | CG2248-RA | 337..919 | 16..598 | 2915 | 100 | Plus |
Rac2-RB | 2429 | CG8556-RB | 680..1198 | 16..534 | 1545 | 86.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 02:53:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1301765..1302347 | 598..16 | 2915 | 100 | Minus |
3L | 28110227 | 3L | 7433993..7434511 | 534..16 | 1545 | 86.5 | Minus |
X | 23542271 | X | 19697956..19698235 | 15..294 | 455 | 77.5 | Plus |
X | 23542271 | X | 19698352..19698538 | 350..536 | 230 | 74.9 | Plus |
3R | 32079331 | 3R | 27638122..27638297 | 173..348 | 220 | 75 | Plus |
Blast to na_te.dros performed on 2015-02-10 02:53:49 has no hits.
BS08459.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:41:15 Download gff for
BS08459.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rac1-PA | 1..579 | 17..595 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:40:37 Download gff for
BS08459.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2248-PA | 1..579 | 17..595 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:41:07 Download gff for
BS08459.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rac1-RA | 331..927 | 12..608 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:11:52 Download gff for
BS08459.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rac1-RA | 331..927 | 12..608 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:11:52 Download gff for
BS08459.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1301757..1302353 | 12..608 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:41:07 Download gff for
BS08459.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1301757..1302353 | 12..608 | 98 | | Minus |
BS08459.complete Sequence
611 bp assembled on 2007-10-17
GenBank Submission: FJ636168
> BS08459.complete
GAAGTTATCAGTCGACATGCAGGCGATCAAGTGCGTCGTCGTGGGCGACG
GAGCCGTGGGAAAGACCTGCCTGCTGATCAGCTACACGACCAATGCCTTT
CCCGGCGAGTACATACCCACCGTGTTCGACAACTACTCGGCCAACGTGAT
GGTGGACGCCAAGCCCATCAACCTGGGCCTGTGGGATACGGCCGGGCAGG
AGGACTACGACCGACTGAGGCCACTGTCTTATCCCCAGACCGATGTCTTC
CTCATCTGCTTCTCGCTGGTGAATCCGGCATCGTTCGAGAACGTGCGGGC
CAAGTGGTATCCGGAGGTGCGCCACCACTGCCCCAGCACGCCCATCATCC
TGGTGGGCACCAAGCTGGATTTGCGCGACGACAAGAACACAATCGAAAAG
CTGAGGGACAAGAAACTGGCGCCCATCACCTATCCGCAGGGCCTGGCCAT
GGCCAAGGAAATCGGAGCGGTCAAGTATCTGGAGTGCTCGGCCCTGACGC
AGAAGGGTCTGAAAACCGTTTTCGACGAGGCCATCCGGTCGGTTTTGTGC
CCCGTGCTGCAGCCCAAGTCCAAGCGCAAGTGCGCCCTGCTCTAAAAGCT
TTCTAGACCAT
BS08459.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:52:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rac1-RB | 579 | CG2248-PB | 1..579 | 17..595 | 2895 | 100 | Plus |
Rac1-RA | 579 | CG2248-PA | 1..579 | 17..595 | 2895 | 100 | Plus |
Rac2-RB | 579 | CG8556-PB | 1..518 | 17..534 | 1540 | 86.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:52:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rac1-RB | 1805 | CG2248-RB | 337..919 | 16..598 | 2915 | 100 | Plus |
Rac1-RA | 1718 | CG2248-RA | 337..919 | 16..598 | 2915 | 100 | Plus |
Rac2-RB | 2429 | CG8556-RB | 680..1198 | 16..534 | 1545 | 86.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:52:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1301765..1302347 | 598..16 | 2915 | 100 | Minus |
3L | 28110227 | 3L | 7433993..7434511 | 534..16 | 1545 | 86.5 | Minus |
X | 23542271 | X | 19697956..19698235 | 15..294 | 455 | 77.5 | Plus |
X | 23542271 | X | 19698352..19698538 | 350..536 | 230 | 74.9 | Plus |
3R | 32079331 | 3R | 27638122..27638297 | 173..348 | 220 | 75 | Plus |
Blast to na_te.dros performed on 2014-11-27 12:52:53 has no hits.
BS08459.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:09:19 Download gff for
BS08459.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rac1-RA | 1..579 | 17..595 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:52:27 Download gff for
BS08459.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rac1-RA | 331..927 | 12..608 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:38:22 Download gff for
BS08459.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rac1-RA | 338..914 | 17..593 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:30:58 Download gff for
BS08459.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rac1-RA | 338..914 | 17..593 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:06:39 Download gff for
BS08459.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rac1-RA | 338..914 | 17..593 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:06:39 Download gff for
BS08459.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1301770..1302346 | 17..593 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:38:22 Download gff for
BS08459.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1301770..1302346 | 17..593 | 100 | | Minus |
BS08459.pep Sequence
Translation from 16 to 594
> BS08459.pep
MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDAKP
INLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVNPASFENVRAKWYPE
VRHHCPSTPIILVGTKLDLRDDKNTIEKLRDKKLAPITYPQGLAMAKEIG
AVKYLECSALTQKGLKTVFDEAIRSVLCPVLQPKSKRKCALL*
BS08459.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:32:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rac1-PB | 192 | CG2248-PB | 1..192 | 1..192 | 1011 | 100 | Plus |
Rac1-PA | 192 | CG2248-PA | 1..192 | 1..192 | 1011 | 100 | Plus |
Rac2-PB | 192 | CG8556-PB | 1..192 | 1..192 | 949 | 93.2 | Plus |
Rac2-PA | 192 | CG8556-PA | 1..192 | 1..192 | 949 | 93.2 | Plus |
Cdc42-PD | 191 | CG12530-PD | 1..191 | 1..192 | 721 | 69.8 | Plus |