Clone BS08459 Report

Search the DGRC for BS08459

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:84
Well:59
Vector:pDNR-Dual
Associated Gene/TranscriptRac1-RA
Protein status:BS08459.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08459.3prime Sequence

609 bp (608 high quality bases) assembled on 2006-01-10

> BS08459.3prime
ATGGTCTAGAAAGCTTTTAGAGCAGGGCGCACTTGCGCTTGGACTTGGGC
TGCAGCACGGGGCACAAAACCGACCGGATGGCCTCGTCGAAAACGGTTTT
CAGACCCTTCTGCGTCAGGGCCGAGCACTCCAGATACTTGACCGCTCCGA
TTTCCTTGGCCATGGCCAGGCCCTGCGGATAGGTGATGGGCGCCAGTTTC
TTGTCCCTCAGCTTTTCGATTGTGTTCTTGTCGTCGCGCAAATCCAGCTT
GGTGCCCACCAGGATGATGGGCGTGCTGGGGCAGTGGTGGCGCACCTCCG
GATACCACTTGGCCCGCACGTTCTCGAACGATGCCGGATTCACCAGCGAG
AAGCAGATGAGGAAGACATCGGTCTGGGGATAAGACAGTGGCCTCAGTCG
GTCGTAGTCCTCCTGCCCGGCCGTATCCCACAGGCCCAGGTTGATGGGCT
TGGCGTCCACCATCACGTTGGCCGAGTAGTTGTCGAACACGGTGGGTATG
TACTCGCCGGGAAAGGCATTGGTCGTGTAGCTGATCAGCAGGCAGGTCTT
TCCCACGGCTCCGTCGCCCACGACGACGCACTTGATCGCCTGCATGTCGA
CTGATAACT

BS08459.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:07:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG2248-PA 579 Rac1-RA 1..579 595..17 2895 100 Minus
CG8556-PA 579 Rac2-RA 25..206 571..390 510 91.2 Minus
CG8556-PA 579 Rac2-RA 451..518 145..78 215 92.6 Minus
CG8556-PA 579 Rac2-RA 226..305 370..291 175 88.7 Minus
CG8416-PB 579 Rho1-RB 170..201 432..401 160 100 Minus
CG8416-PC 579 Rho1-RC 170..201 432..401 160 100 Minus
CG8416-PD 579 Rho1-RD 170..201 432..401 160 100 Minus
CG8416-PE 579 Rho1-RE 170..201 432..401 160 100 Minus
CG8416-PF 579 Rho1-RF 170..201 432..401 160 100 Minus
CG8416-PG 579 Rho1-RG 170..201 432..401 160 100 Minus
CG8416-PA 579 Rho1-RA 170..201 432..401 160 100 Minus
CG12530-PA 576 Cdc42-RA 10..59 586..537 150 92 Minus
CG12530-PB 576 Cdc42-RB 10..59 586..537 150 92 Minus
CG34104-PA 1296 CG34104-RA 1175..1217 588..546 140 93 Minus
CG34104-PB 1749 CG34104-RB 1175..1217 588..546 140 93 Minus
CG12530-PA 576 Cdc42-RA 464..520 132..76 135 89.4 Minus
CG12530-PB 576 Cdc42-RB 464..520 132..76 135 89.4 Minus
CG5588-PB 588 Mtl-RB 166..212 439..393 135 91.4 Minus
CG5588-PA 588 Mtl-RA 166..212 439..393 135 91.4 Minus
CG5588-PC 588 Mtl-RC 166..212 439..393 135 91.4 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:21:17
Subject Length Description Subject Range Query Range Score Percent Strand
Rac1-RB 1805 CG2248-RB 337..919 596..14 2915 100 Minus
Rac1-RA 1718 CG2248-RA 337..919 596..14 2915 100 Minus
Rac2-RB 2429 CG8556-RB 680..1198 596..78 1545 86.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:21:15
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1301765..1302347 14..596 2915 100 Plus
3L 28110227 3L 7433993..7434511 78..596 1545 86.5 Plus
X 23542271 X 19697956..19698235 597..318 455 77.5 Minus
X 23542271 X 19698352..19698538 262..76 230 74.9 Minus
3R 32079331 3R 27638122..27638297 439..264 220 75 Minus
Blast to na_te.dros performed on 2015-02-10 18:21:16 has no hits.

BS08459.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:41:14 Download gff for BS08459.3prime
Subject Subject Range Query Range Percent Splice Strand
Rac1-PA 1..579 17..595 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:40:36 Download gff for BS08459.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2248-PA 1..579 17..595 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:24:00 Download gff for BS08459.3prime
Subject Subject Range Query Range Percent Splice Strand
Rac1-RA 331..927 4..600 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:50:48 Download gff for BS08459.3prime
Subject Subject Range Query Range Percent Splice Strand
Rac1-RA 331..927 4..600 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:50:48 Download gff for BS08459.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 1301757..1302353 4..600 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:24:00 Download gff for BS08459.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1301757..1302353 4..600 98   Plus

BS08459.5prime Sequence

609 bp (608 high quality bases) assembled on 2006-01-10

> BS08459.5prime
GAAGTTATCAGTCGACATGCAGGCGATCAAGTGCGTCGTCGTGGGCGACG
GAGCCGTGGGAAAGACCTGCCTGCTGATCAGCTACACGACCAATGCCTTT
CCCGGCGAGTACATACCCACCGTGTTCGACAACTACTCGGCCAACGTGAT
GGTGGACGCCAAGCCCATCAACCTGGGCCTGTGGGATACGGCCGGGCAGG
AGGACTACGACCGACTGAGGCCACTGTCTTATCCCCAGACCGATGTCTTC
CTCATCTGCTTCTCGCTGGTGAATCCGGCATCGTTCGAGAACGTGCGGGC
CAAGTGGTATCCGGAGGTGCGCCACCACTGCCCCAGCACGCCCATCATCC
TGGTGGGCACCAAGCTGGATTTGCGCGACGACAAGAACACAATCGAAAAG
CTGAGGGACAAGAAACTGGCGCCCATCACCTATCCGCAGGGCCTGGCCAT
GGCCAAGGAAATCGGAGCGGTCAAGTATCTGGAGTGCTCGGCCCTGACGC
AGAAGGGTCTGAAAACCGTTTTCGACGAGGCCATCCGGTCGGTTTTGTGC
CCCGTGCTGCAGCCCAAGTCCAAGCGCAAGTGCGCCCTGCTCTAAAAGCT
TTCTAGACC

BS08459.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:07:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG2248-PA 579 Rac1-RA 1..579 17..595 2895 100 Plus
CG8556-PA 579 Rac2-RA 25..206 41..222 510 91.2 Plus
CG8556-PA 579 Rac2-RA 451..518 467..534 215 92.6 Plus
CG8556-PA 579 Rac2-RA 226..305 242..321 175 88.7 Plus
CG8416-PB 579 Rho1-RB 170..201 180..211 160 100 Plus
CG8416-PC 579 Rho1-RC 170..201 180..211 160 100 Plus
CG8416-PD 579 Rho1-RD 170..201 180..211 160 100 Plus
CG8416-PE 579 Rho1-RE 170..201 180..211 160 100 Plus
CG8416-PF 579 Rho1-RF 170..201 180..211 160 100 Plus
CG8416-PG 579 Rho1-RG 170..201 180..211 160 100 Plus
CG8416-PA 579 Rho1-RA 170..201 180..211 160 100 Plus
CG12530-PA 576 Cdc42-RA 10..59 26..75 150 92 Plus
CG12530-PB 576 Cdc42-RB 10..59 26..75 150 92 Plus
CG34104-PA 1296 CG34104-RA 1175..1217 24..66 140 93 Plus
CG34104-PB 1749 CG34104-RB 1175..1217 24..66 140 93 Plus
CG12530-PA 576 Cdc42-RA 464..520 480..536 135 89.4 Plus
CG12530-PB 576 Cdc42-RB 464..520 480..536 135 89.4 Plus
CG5588-PB 588 Mtl-RB 166..212 173..219 135 91.4 Plus
CG5588-PA 588 Mtl-RA 166..212 173..219 135 91.4 Plus
CG5588-PC 588 Mtl-RC 166..212 173..219 135 91.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 02:53:52
Subject Length Description Subject Range Query Range Score Percent Strand
Rac1-RB 1805 CG2248-RB 337..919 16..598 2915 100 Plus
Rac1-RA 1718 CG2248-RA 337..919 16..598 2915 100 Plus
Rac2-RB 2429 CG8556-RB 680..1198 16..534 1545 86.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 02:53:45
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1301765..1302347 598..16 2915 100 Minus
3L 28110227 3L 7433993..7434511 534..16 1545 86.5 Minus
X 23542271 X 19697956..19698235 15..294 455 77.5 Plus
X 23542271 X 19698352..19698538 350..536 230 74.9 Plus
3R 32079331 3R 27638122..27638297 173..348 220 75 Plus
Blast to na_te.dros performed on 2015-02-10 02:53:49 has no hits.

BS08459.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:41:15 Download gff for BS08459.5prime
Subject Subject Range Query Range Percent Splice Strand
Rac1-PA 1..579 17..595 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:40:37 Download gff for BS08459.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2248-PA 1..579 17..595 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:41:07 Download gff for BS08459.5prime
Subject Subject Range Query Range Percent Splice Strand
Rac1-RA 331..927 12..608 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:11:52 Download gff for BS08459.5prime
Subject Subject Range Query Range Percent Splice Strand
Rac1-RA 331..927 12..608 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:11:52 Download gff for BS08459.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 1301757..1302353 12..608 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:41:07 Download gff for BS08459.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1301757..1302353 12..608 98   Minus

BS08459.complete Sequence

611 bp assembled on 2007-10-17

GenBank Submission: FJ636168

> BS08459.complete
GAAGTTATCAGTCGACATGCAGGCGATCAAGTGCGTCGTCGTGGGCGACG
GAGCCGTGGGAAAGACCTGCCTGCTGATCAGCTACACGACCAATGCCTTT
CCCGGCGAGTACATACCCACCGTGTTCGACAACTACTCGGCCAACGTGAT
GGTGGACGCCAAGCCCATCAACCTGGGCCTGTGGGATACGGCCGGGCAGG
AGGACTACGACCGACTGAGGCCACTGTCTTATCCCCAGACCGATGTCTTC
CTCATCTGCTTCTCGCTGGTGAATCCGGCATCGTTCGAGAACGTGCGGGC
CAAGTGGTATCCGGAGGTGCGCCACCACTGCCCCAGCACGCCCATCATCC
TGGTGGGCACCAAGCTGGATTTGCGCGACGACAAGAACACAATCGAAAAG
CTGAGGGACAAGAAACTGGCGCCCATCACCTATCCGCAGGGCCTGGCCAT
GGCCAAGGAAATCGGAGCGGTCAAGTATCTGGAGTGCTCGGCCCTGACGC
AGAAGGGTCTGAAAACCGTTTTCGACGAGGCCATCCGGTCGGTTTTGTGC
CCCGTGCTGCAGCCCAAGTCCAAGCGCAAGTGCGCCCTGCTCTAAAAGCT
TTCTAGACCAT

BS08459.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:52:54
Subject Length Description Subject Range Query Range Score Percent Strand
Rac1-RB 579 CG2248-PB 1..579 17..595 2895 100 Plus
Rac1-RA 579 CG2248-PA 1..579 17..595 2895 100 Plus
Rac2-RB 579 CG8556-PB 1..518 17..534 1540 86.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:52:56
Subject Length Description Subject Range Query Range Score Percent Strand
Rac1-RB 1805 CG2248-RB 337..919 16..598 2915 100 Plus
Rac1-RA 1718 CG2248-RA 337..919 16..598 2915 100 Plus
Rac2-RB 2429 CG8556-RB 680..1198 16..534 1545 86.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:52:52
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1301765..1302347 598..16 2915 100 Minus
3L 28110227 3L 7433993..7434511 534..16 1545 86.5 Minus
X 23542271 X 19697956..19698235 15..294 455 77.5 Plus
X 23542271 X 19698352..19698538 350..536 230 74.9 Plus
3R 32079331 3R 27638122..27638297 173..348 220 75 Plus
Blast to na_te.dros performed on 2014-11-27 12:52:53 has no hits.

BS08459.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:09:19 Download gff for BS08459.complete
Subject Subject Range Query Range Percent Splice Strand
Rac1-RA 1..579 17..595 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:52:27 Download gff for BS08459.complete
Subject Subject Range Query Range Percent Splice Strand
Rac1-RA 331..927 12..608 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:38:22 Download gff for BS08459.complete
Subject Subject Range Query Range Percent Splice Strand
Rac1-RA 338..914 17..593 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:30:58 Download gff for BS08459.complete
Subject Subject Range Query Range Percent Splice Strand
Rac1-RA 338..914 17..593 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:06:39 Download gff for BS08459.complete
Subject Subject Range Query Range Percent Splice Strand
Rac1-RA 338..914 17..593 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:06:39 Download gff for BS08459.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1301770..1302346 17..593 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:38:22 Download gff for BS08459.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1301770..1302346 17..593 100   Minus

BS08459.pep Sequence

Translation from 16 to 594

> BS08459.pep
MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDAKP
INLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVNPASFENVRAKWYPE
VRHHCPSTPIILVGTKLDLRDDKNTIEKLRDKKLAPITYPQGLAMAKEIG
AVKYLECSALTQKGLKTVFDEAIRSVLCPVLQPKSKRKCALL*

BS08459.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:32:45
Subject Length Description Subject Range Query Range Score Percent Strand
Rac1-PB 192 CG2248-PB 1..192 1..192 1011 100 Plus
Rac1-PA 192 CG2248-PA 1..192 1..192 1011 100 Plus
Rac2-PB 192 CG8556-PB 1..192 1..192 949 93.2 Plus
Rac2-PA 192 CG8556-PA 1..192 1..192 949 93.2 Plus
Cdc42-PD 191 CG12530-PD 1..191 1..192 721 69.8 Plus