Clone Sequence Records
BS08460.3prime Sequence
954 bp (896 high quality bases) assembled on 2006-01-10
> BS08460.3prime
ATGGTCTAGAAAGCTTCTAGTCGCTATCGCTATCTGCCACCCCGCCTGCC
GCTCCATCCTCATCATCATCATCGTCGCTGTCCTCCAGTTCGGGCATCGG
GAAGCGCAGGAGGGCTGCAATTCCAGTTAGTTGAGCAAGTTGTTCTCCTG
AGATGTGCATGCTCGAAAAGATTTTGACTTCTCCCCCAGCATCGCGAATG
GATTCGACCAGATTGACATATTCCTTTCTCAGACTAACGTCTTGGCATCT
AAAGAGGTTGTCCGAGATCAGCAGCGTTTCGATGGCCTGCGACTCGGCGG
CTTGGAGGACATGTTTCTTTCCATAGAAGGCCTTGGCGGGCTCACATTGC
AGCATCATGTAGAATTGTTCCAGGGCCTTGACCTCGCCAGCTGCCTTGGT
GTCAGACATCTTGGCCAGCACGGCGGGATCCTGTAGAATTTCTCTTAAGG
AGTGCTTAAATCCCGAGGATGCGTGCACCAGCATAAACTTGCTCTTGTTG
TCCAGCAGCAGCTTGTAATCCATTTTGACCGCCTGCTGGAACATGTAGTC
ATAGAACTGATCGCGCACGAATCCCGGCGACGCAATCAACACACACTTGA
CCACATCGAAGTTGACGTGCCGCAGGATGCTCTGCATAACCTGCTCGTAG
AACTTGGCCAGTCCCTTCTCGTGTTGCTGGACACTGCCCTTGCGCTTGCG
CGGTATGGAGACCTCAATCTTGCTCCGCACCAGGGTCATACTGGCGGTGA
TCAGGCAGACGTGTGCTAATCCCTCCTGCATCACAACGGCGGCTACATCC
GCAGACTGTGTGGGATCGCAGGCCATTTCGATGCGCTCTAAGGCAATTGT
GTCCCATTCCGGCTTACGCAGCTCGAACTTGCGATTCAGCTCCAGGTCGA
GGGTGTGATAGGCGCCCATCTTGACATACTGGTTCTCCTCGATGTTTCTG
CCTT
BS08460.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:07:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3959-PA | 1188 | pelo-RA | 251..1188 | 954..17 | 4690 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:23:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
pelo-RA | 2045 | CG3959-RA | 494..1431 | 954..17 | 4690 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:23:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9701362..9701874 | 954..442 | 2565 | 100 | Minus |
2L | 23513712 | 2L | 9701928..9702122 | 443..249 | 975 | 100 | Minus |
2L | 23513712 | 2L | 9708145..9708269 | 141..17 | 625 | 100 | Minus |
2L | 23513712 | 2L | 9706638..9706746 | 250..142 | 545 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 18:23:41 has no hits.
BS08460.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:41:16 Download gff for
BS08460.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pelo-PA | 251..1188 | 17..954 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:40:39 Download gff for
BS08460.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3959-PA | 251..1188 | 17..954 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:12:40 Download gff for
BS08460.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pelo-RA | 494..1431 | 17..954 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:16:21 Download gff for
BS08460.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pelo-RA | 494..1431 | 17..954 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:16:21 Download gff for
BS08460.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9701362..9701874 | 442..954 | 100 | -> | Minus |
2L | 9701930..9702122 | 249..441 | 100 | -> | Minus |
2L | 9706640..9706746 | 142..248 | 100 | -> | Minus |
2L | 9708145..9708269 | 17..141 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:12:40 Download gff for
BS08460.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9701362..9701874 | 442..954 | 100 | -> | Minus |
arm_2L | 9701930..9702122 | 249..441 | 100 | -> | Minus |
arm_2L | 9706640..9706746 | 142..248 | 100 | -> | Minus |
arm_2L | 9708145..9708269 | 17..141 | 100 | | Minus |
BS08460.5prime Sequence
898 bp (818 high quality bases) assembled on 2006-01-10
> BS08460.5prime
GAAGTTATCAGTCGACATGAAGCTGCTGGGCAAATACGTGGACAAGGGCA
TGCAGGGAAATGTGACCCTGGTGCCGGAGGAGTCCGAGGATATGTGGCAC
GCCTACAATTTGATTGCGAAAGGCGACAGCGTGCGCAGCACCACTATTCG
CAAGGTGCAGAATGAAACGGCTACTGGCTCCTCCACCAGCAGCCGGGTGC
GCACCACACTAACCATCGCAGTGGAGAGCATAGATTTTGATACGCAGGCT
TGTGTGCTCCGCCTTAAAGGCAGAAACATCGAGGAGAACCAGTATGTCAA
GATGGGCGCCTATCACACCCTCGACCTGGAGCTGAATCGCAAGTTCGAGC
TGCGTAAGCCGGAATGGGACACAATTGCCTTAGAGCGCATCGAAATGGCC
TGCGATCCCACACAGTCTGCGGATGTAGCCGCCGTTGTGATGCAGGAGGG
ATTAGCACACGTCTGCCTGATCACCGCCAGTATGACCCTGGTGCGGAGCA
AGATTGAGGTCTCCATACCGCGCAAGCGCAAGGGCAGTGTCCAGCAACAC
GAGAAGGGACTGGCCAAGTTCTACGAGCAGGTTATGCAGAGCATCCTGCG
GCACGTCAACTTCGATGTGGTCAAGTGTGTGTTGATTGCGTCGCCGGGAT
TCGTGCGCGATCAGTTCTATGACTACATGTTCCAGCAGGCGGTCAAAATG
GATTACAAGCTGCTGCTGGACAACAAGAGCAAGTTTATGCTGGTGCACGC
ATCCTCGGGATTTAAGCACTCCTTAAGAGAAATTCTACAGGATCCCGCCG
TGCTGGCCAAGATGTCTGACACCCANGCAGCTGGCGAGGTCAAGGCCCTG
GAACATTCTACATGATGCTGCAATGTGAGCCCGCCAAAGGCTTCTATG
BS08460.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:07:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3959-PA | 1188 | pelo-RA | 1..839 | 17..855 | 4151 | 99.7 | Plus |
CG3959-PA | 1188 | pelo-RA | 840..883 | 855..898 | 170 | 95.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:48:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
pelo-RA | 2045 | CG3959-RA | 244..1126 | 17..898 | 4334 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:48:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9701152..9701874 | 57..779 | 3615 | 100 | Plus |
2L | 23513712 | 2L | 9701928..9702049 | 778..898 | 504 | 95.9 | Plus |
2L | 23513712 | 2L | 9701053..9701093 | 17..57 | 205 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:48:42 has no hits.
BS08460.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:41:17 Download gff for
BS08460.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pelo-PA | 1..883 | 17..898 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:40:40 Download gff for
BS08460.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3959-PA | 1..883 | 17..898 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:11:21 Download gff for
BS08460.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pelo-RA | 237..1126 | 10..898 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:34:45 Download gff for
BS08460.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pelo-RA | 237..1126 | 10..898 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:34:45 Download gff for
BS08460.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9701048..9701093 | 14..57 | 91 | -> | Plus |
2L | 9701153..9701874 | 58..779 | 100 | -> | Plus |
2L | 9701930..9702049 | 780..898 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:11:21 Download gff for
BS08460.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9701048..9701093 | 14..57 | 91 | -> | Plus |
arm_2L | 9701153..9701874 | 58..779 | 100 | -> | Plus |
arm_2L | 9701930..9702049 | 780..898 | 95 | | Plus |
BS08460.complete Sequence
1220 bp (1220 high quality bases) assembled on 2006-01-18
GenBank Submission: FJ636169
> BS08460.complete
GAAGTTATCAGTCGACATGAAGCTGCTGGGCAAATACGTGGACAAGGGCA
TGCAGGGAAATGTGACCCTGGTGCCGGAGGAGTCCGAGGATATGTGGCAC
GCCTACAATTTGATTGCGAAAGGCGACAGCGTGCGCAGCACCACTATTCG
CAAGGTGCAGAATGAAACGGCTACTGGCTCCTCCACCAGCAGCCGGGTGC
GCACCACACTAACCATCGCAGTGGAGAGCATAGATTTTGATACGCAGGCT
TGTGTGCTCCGCCTTAAAGGCAGAAACATCGAGGAGAACCAGTATGTCAA
GATGGGCGCCTATCACACCCTCGACCTGGAGCTGAATCGCAAGTTCGAGC
TGCGTAAGCCGGAATGGGACACAATTGCCTTAGAGCGCATCGAAATGGCC
TGCGATCCCACACAGTCTGCGGATGTAGCCGCCGTTGTGATGCAGGAGGG
ATTAGCACACGTCTGCCTGATCACCGCCAGTATGACCCTGGTGCGGAGCA
AGATTGAGGTCTCCATACCGCGCAAGCGCAAGGGCAGTGTCCAGCAACAC
GAGAAGGGACTGGCCAAGTTCTACGAGCAGGTTATGCAGAGCATCCTGCG
GCACGTCAACTTCGATGTGGTCAAGTGTGTGTTGATTGCGTCGCCGGGAT
TCGTGCGCGATCAGTTCTATGACTACATGTTCCAGCAGGCGGTCAAAATG
GATTACAAGCTGCTGCTGGACAACAAGAGCAAGTTTATGCTGGTGCACGC
ATCCTCGGGATTTAAGCACTCCTTAAGAGAAATTCTACAGGATCCCGCCG
TGCTGGCCAAGATGTCTGACACCAAGGCAGCTGGCGAGGTCAAGGCCCTG
GAACAATTCTACATGATGCTGCAATGTGAGCCCGCCAAGGCCTTCTATGG
AAAGAAACATGTCCTCCAAGCCGCCGAGTCGCAGGCCATCGAAACGCTGC
TGATCTCGGACAACCTCTTTAGATGCCAAGACGTTAGTCTGAGAAAGGAA
TATGTCAATCTGGTCGAATCCATTCGCGATGCTGGGGGAGAAGTCAAAAT
CTTTTCGAGCATGCACATCTCAGGAGAACAACTTGCTCAACTAACTGGAA
TTGCAGCCCTCCTGCGCTTCCCGATGCCCGAACTGGAGGACAGCGACGAT
GATGATGATGAGGATGGAGCGGCAGGCGGGGTGGCAGATAGCGATAGCGA
CTAGAAGCTTTCTAGACCAT
BS08460.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:19:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
pelo-RA | 1188 | CG3959-PA | 1..1188 | 17..1204 | 5940 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:19:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
pelo-RA | 2045 | CG3959-RA | 244..1431 | 17..1204 | 5940 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:19:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9701152..9701874 | 57..779 | 3615 | 100 | Plus |
2L | 23513712 | 2L | 9701928..9702122 | 778..972 | 975 | 100 | Plus |
2L | 23513712 | 2L | 9708145..9708269 | 1080..1204 | 625 | 100 | Plus |
2L | 23513712 | 2L | 9706638..9706746 | 971..1079 | 545 | 100 | Plus |
2L | 23513712 | 2L | 9701053..9701093 | 17..57 | 205 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:19:50 has no hits.
BS08460.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:03:12 Download gff for
BS08460.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pelo-RA | 1..1188 | 17..1204 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:41:08 Download gff for
BS08460.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pelo-RA | 251..1445 | 10..1204 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:50:07 Download gff for
BS08460.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pelo-RA | 244..1431 | 17..1204 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:03:12 Download gff for
BS08460.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pelo-RA | 251..1445 | 10..1204 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:18:35 Download gff for
BS08460.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pelo-RA | 244..1431 | 17..1204 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:18:35 Download gff for
BS08460.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9701053..9701093 | 17..57 | 100 | -> | Plus |
2L | 9701153..9701874 | 58..779 | 100 | -> | Plus |
2L | 9701930..9702122 | 780..972 | 100 | -> | Plus |
2L | 9706640..9706746 | 973..1079 | 100 | -> | Plus |
2L | 9708145..9708269 | 1080..1204 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:50:07 Download gff for
BS08460.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9701053..9701093 | 17..57 | 100 | -> | Plus |
arm_2L | 9701153..9701874 | 58..779 | 100 | -> | Plus |
arm_2L | 9701930..9702122 | 780..972 | 100 | -> | Plus |
arm_2L | 9706640..9706746 | 973..1079 | 100 | -> | Plus |
arm_2L | 9708145..9708269 | 1080..1204 | 100 | | Plus |
BS08460.pep Sequence
Translation from 16 to 1203
> BS08460.pep
MKLLGKYVDKGMQGNVTLVPEESEDMWHAYNLIAKGDSVRSTTIRKVQNE
TATGSSTSSRVRTTLTIAVESIDFDTQACVLRLKGRNIEENQYVKMGAYH
TLDLELNRKFELRKPEWDTIALERIEMACDPTQSADVAAVVMQEGLAHVC
LITASMTLVRSKIEVSIPRKRKGSVQQHEKGLAKFYEQVMQSILRHVNFD
VVKCVLIASPGFVRDQFYDYMFQQAVKMDYKLLLDNKSKFMLVHASSGFK
HSLREILQDPAVLAKMSDTKAAGEVKALEQFYMMLQCEPAKAFYGKKHVL
QAAESQAIETLLISDNLFRCQDVSLRKEYVNLVESIRDAGGEVKIFSSMH
ISGEQLAQLTGIAALLRFPMPELEDSDDDDDEDGAAGGVADSDSD*
BS08460.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:21:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
pelo-PA | 395 | CG3959-PA | 1..395 | 1..395 | 1999 | 100 | Plus |