Clone BS08460 Report

Search the DGRC for BS08460

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:84
Well:60
Vector:pDNR-Dual
Associated Gene/Transcriptpelo-RA
Protein status:BS08460.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08460.3prime Sequence

954 bp (896 high quality bases) assembled on 2006-01-10

> BS08460.3prime
ATGGTCTAGAAAGCTTCTAGTCGCTATCGCTATCTGCCACCCCGCCTGCC
GCTCCATCCTCATCATCATCATCGTCGCTGTCCTCCAGTTCGGGCATCGG
GAAGCGCAGGAGGGCTGCAATTCCAGTTAGTTGAGCAAGTTGTTCTCCTG
AGATGTGCATGCTCGAAAAGATTTTGACTTCTCCCCCAGCATCGCGAATG
GATTCGACCAGATTGACATATTCCTTTCTCAGACTAACGTCTTGGCATCT
AAAGAGGTTGTCCGAGATCAGCAGCGTTTCGATGGCCTGCGACTCGGCGG
CTTGGAGGACATGTTTCTTTCCATAGAAGGCCTTGGCGGGCTCACATTGC
AGCATCATGTAGAATTGTTCCAGGGCCTTGACCTCGCCAGCTGCCTTGGT
GTCAGACATCTTGGCCAGCACGGCGGGATCCTGTAGAATTTCTCTTAAGG
AGTGCTTAAATCCCGAGGATGCGTGCACCAGCATAAACTTGCTCTTGTTG
TCCAGCAGCAGCTTGTAATCCATTTTGACCGCCTGCTGGAACATGTAGTC
ATAGAACTGATCGCGCACGAATCCCGGCGACGCAATCAACACACACTTGA
CCACATCGAAGTTGACGTGCCGCAGGATGCTCTGCATAACCTGCTCGTAG
AACTTGGCCAGTCCCTTCTCGTGTTGCTGGACACTGCCCTTGCGCTTGCG
CGGTATGGAGACCTCAATCTTGCTCCGCACCAGGGTCATACTGGCGGTGA
TCAGGCAGACGTGTGCTAATCCCTCCTGCATCACAACGGCGGCTACATCC
GCAGACTGTGTGGGATCGCAGGCCATTTCGATGCGCTCTAAGGCAATTGT
GTCCCATTCCGGCTTACGCAGCTCGAACTTGCGATTCAGCTCCAGGTCGA
GGGTGTGATAGGCGCCCATCTTGACATACTGGTTCTCCTCGATGTTTCTG
CCTT

BS08460.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:07:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG3959-PA 1188 pelo-RA 251..1188 954..17 4690 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:23:44
Subject Length Description Subject Range Query Range Score Percent Strand
pelo-RA 2045 CG3959-RA 494..1431 954..17 4690 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:23:39
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9701362..9701874 954..442 2565 100 Minus
2L 23513712 2L 9701928..9702122 443..249 975 100 Minus
2L 23513712 2L 9708145..9708269 141..17 625 100 Minus
2L 23513712 2L 9706638..9706746 250..142 545 100 Minus
Blast to na_te.dros performed on 2015-02-12 18:23:41 has no hits.

BS08460.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:41:16 Download gff for BS08460.3prime
Subject Subject Range Query Range Percent Splice Strand
pelo-PA 251..1188 17..954 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:40:39 Download gff for BS08460.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3959-PA 251..1188 17..954 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:12:40 Download gff for BS08460.3prime
Subject Subject Range Query Range Percent Splice Strand
pelo-RA 494..1431 17..954 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:16:21 Download gff for BS08460.3prime
Subject Subject Range Query Range Percent Splice Strand
pelo-RA 494..1431 17..954 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:16:21 Download gff for BS08460.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 9701362..9701874 442..954 100 -> Minus
2L 9701930..9702122 249..441 100 -> Minus
2L 9706640..9706746 142..248 100 -> Minus
2L 9708145..9708269 17..141 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:12:40 Download gff for BS08460.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9701362..9701874 442..954 100 -> Minus
arm_2L 9701930..9702122 249..441 100 -> Minus
arm_2L 9706640..9706746 142..248 100 -> Minus
arm_2L 9708145..9708269 17..141 100   Minus

BS08460.5prime Sequence

898 bp (818 high quality bases) assembled on 2006-01-10

> BS08460.5prime
GAAGTTATCAGTCGACATGAAGCTGCTGGGCAAATACGTGGACAAGGGCA
TGCAGGGAAATGTGACCCTGGTGCCGGAGGAGTCCGAGGATATGTGGCAC
GCCTACAATTTGATTGCGAAAGGCGACAGCGTGCGCAGCACCACTATTCG
CAAGGTGCAGAATGAAACGGCTACTGGCTCCTCCACCAGCAGCCGGGTGC
GCACCACACTAACCATCGCAGTGGAGAGCATAGATTTTGATACGCAGGCT
TGTGTGCTCCGCCTTAAAGGCAGAAACATCGAGGAGAACCAGTATGTCAA
GATGGGCGCCTATCACACCCTCGACCTGGAGCTGAATCGCAAGTTCGAGC
TGCGTAAGCCGGAATGGGACACAATTGCCTTAGAGCGCATCGAAATGGCC
TGCGATCCCACACAGTCTGCGGATGTAGCCGCCGTTGTGATGCAGGAGGG
ATTAGCACACGTCTGCCTGATCACCGCCAGTATGACCCTGGTGCGGAGCA
AGATTGAGGTCTCCATACCGCGCAAGCGCAAGGGCAGTGTCCAGCAACAC
GAGAAGGGACTGGCCAAGTTCTACGAGCAGGTTATGCAGAGCATCCTGCG
GCACGTCAACTTCGATGTGGTCAAGTGTGTGTTGATTGCGTCGCCGGGAT
TCGTGCGCGATCAGTTCTATGACTACATGTTCCAGCAGGCGGTCAAAATG
GATTACAAGCTGCTGCTGGACAACAAGAGCAAGTTTATGCTGGTGCACGC
ATCCTCGGGATTTAAGCACTCCTTAAGAGAAATTCTACAGGATCCCGCCG
TGCTGGCCAAGATGTCTGACACCCANGCAGCTGGCGAGGTCAAGGCCCTG
GAACATTCTACATGATGCTGCAATGTGAGCCCGCCAAAGGCTTCTATG

BS08460.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:07:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG3959-PA 1188 pelo-RA 1..839 17..855 4151 99.7 Plus
CG3959-PA 1188 pelo-RA 840..883 855..898 170 95.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:48:44
Subject Length Description Subject Range Query Range Score Percent Strand
pelo-RA 2045 CG3959-RA 244..1126 17..898 4334 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:48:39
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9701152..9701874 57..779 3615 100 Plus
2L 23513712 2L 9701928..9702049 778..898 504 95.9 Plus
2L 23513712 2L 9701053..9701093 17..57 205 100 Plus
Blast to na_te.dros performed on 2015-02-11 10:48:42 has no hits.

BS08460.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:41:17 Download gff for BS08460.5prime
Subject Subject Range Query Range Percent Splice Strand
pelo-PA 1..883 17..898 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:40:40 Download gff for BS08460.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3959-PA 1..883 17..898 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:11:21 Download gff for BS08460.5prime
Subject Subject Range Query Range Percent Splice Strand
pelo-RA 237..1126 10..898 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:34:45 Download gff for BS08460.5prime
Subject Subject Range Query Range Percent Splice Strand
pelo-RA 237..1126 10..898 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:34:45 Download gff for BS08460.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 9701048..9701093 14..57 91 -> Plus
2L 9701153..9701874 58..779 100 -> Plus
2L 9701930..9702049 780..898 95   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:11:21 Download gff for BS08460.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9701048..9701093 14..57 91 -> Plus
arm_2L 9701153..9701874 58..779 100 -> Plus
arm_2L 9701930..9702049 780..898 95   Plus

BS08460.complete Sequence

1220 bp (1220 high quality bases) assembled on 2006-01-18

GenBank Submission: FJ636169

> BS08460.complete
GAAGTTATCAGTCGACATGAAGCTGCTGGGCAAATACGTGGACAAGGGCA
TGCAGGGAAATGTGACCCTGGTGCCGGAGGAGTCCGAGGATATGTGGCAC
GCCTACAATTTGATTGCGAAAGGCGACAGCGTGCGCAGCACCACTATTCG
CAAGGTGCAGAATGAAACGGCTACTGGCTCCTCCACCAGCAGCCGGGTGC
GCACCACACTAACCATCGCAGTGGAGAGCATAGATTTTGATACGCAGGCT
TGTGTGCTCCGCCTTAAAGGCAGAAACATCGAGGAGAACCAGTATGTCAA
GATGGGCGCCTATCACACCCTCGACCTGGAGCTGAATCGCAAGTTCGAGC
TGCGTAAGCCGGAATGGGACACAATTGCCTTAGAGCGCATCGAAATGGCC
TGCGATCCCACACAGTCTGCGGATGTAGCCGCCGTTGTGATGCAGGAGGG
ATTAGCACACGTCTGCCTGATCACCGCCAGTATGACCCTGGTGCGGAGCA
AGATTGAGGTCTCCATACCGCGCAAGCGCAAGGGCAGTGTCCAGCAACAC
GAGAAGGGACTGGCCAAGTTCTACGAGCAGGTTATGCAGAGCATCCTGCG
GCACGTCAACTTCGATGTGGTCAAGTGTGTGTTGATTGCGTCGCCGGGAT
TCGTGCGCGATCAGTTCTATGACTACATGTTCCAGCAGGCGGTCAAAATG
GATTACAAGCTGCTGCTGGACAACAAGAGCAAGTTTATGCTGGTGCACGC
ATCCTCGGGATTTAAGCACTCCTTAAGAGAAATTCTACAGGATCCCGCCG
TGCTGGCCAAGATGTCTGACACCAAGGCAGCTGGCGAGGTCAAGGCCCTG
GAACAATTCTACATGATGCTGCAATGTGAGCCCGCCAAGGCCTTCTATGG
AAAGAAACATGTCCTCCAAGCCGCCGAGTCGCAGGCCATCGAAACGCTGC
TGATCTCGGACAACCTCTTTAGATGCCAAGACGTTAGTCTGAGAAAGGAA
TATGTCAATCTGGTCGAATCCATTCGCGATGCTGGGGGAGAAGTCAAAAT
CTTTTCGAGCATGCACATCTCAGGAGAACAACTTGCTCAACTAACTGGAA
TTGCAGCCCTCCTGCGCTTCCCGATGCCCGAACTGGAGGACAGCGACGAT
GATGATGATGAGGATGGAGCGGCAGGCGGGGTGGCAGATAGCGATAGCGA
CTAGAAGCTTTCTAGACCAT

BS08460.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:19:52
Subject Length Description Subject Range Query Range Score Percent Strand
pelo-RA 1188 CG3959-PA 1..1188 17..1204 5940 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:19:54
Subject Length Description Subject Range Query Range Score Percent Strand
pelo-RA 2045 CG3959-RA 244..1431 17..1204 5940 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:19:49
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9701152..9701874 57..779 3615 100 Plus
2L 23513712 2L 9701928..9702122 778..972 975 100 Plus
2L 23513712 2L 9708145..9708269 1080..1204 625 100 Plus
2L 23513712 2L 9706638..9706746 971..1079 545 100 Plus
2L 23513712 2L 9701053..9701093 17..57 205 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:19:50 has no hits.

BS08460.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:03:12 Download gff for BS08460.complete
Subject Subject Range Query Range Percent Splice Strand
pelo-RA 1..1188 17..1204 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:41:08 Download gff for BS08460.complete
Subject Subject Range Query Range Percent Splice Strand
pelo-RA 251..1445 10..1204 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:50:07 Download gff for BS08460.complete
Subject Subject Range Query Range Percent Splice Strand
pelo-RA 244..1431 17..1204 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:03:12 Download gff for BS08460.complete
Subject Subject Range Query Range Percent Splice Strand
pelo-RA 251..1445 10..1204 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:18:35 Download gff for BS08460.complete
Subject Subject Range Query Range Percent Splice Strand
pelo-RA 244..1431 17..1204 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:18:35 Download gff for BS08460.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9701053..9701093 17..57 100 -> Plus
2L 9701153..9701874 58..779 100 -> Plus
2L 9701930..9702122 780..972 100 -> Plus
2L 9706640..9706746 973..1079 100 -> Plus
2L 9708145..9708269 1080..1204 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:50:07 Download gff for BS08460.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9701053..9701093 17..57 100 -> Plus
arm_2L 9701153..9701874 58..779 100 -> Plus
arm_2L 9701930..9702122 780..972 100 -> Plus
arm_2L 9706640..9706746 973..1079 100 -> Plus
arm_2L 9708145..9708269 1080..1204 100   Plus

BS08460.pep Sequence

Translation from 16 to 1203

> BS08460.pep
MKLLGKYVDKGMQGNVTLVPEESEDMWHAYNLIAKGDSVRSTTIRKVQNE
TATGSSTSSRVRTTLTIAVESIDFDTQACVLRLKGRNIEENQYVKMGAYH
TLDLELNRKFELRKPEWDTIALERIEMACDPTQSADVAAVVMQEGLAHVC
LITASMTLVRSKIEVSIPRKRKGSVQQHEKGLAKFYEQVMQSILRHVNFD
VVKCVLIASPGFVRDQFYDYMFQQAVKMDYKLLLDNKSKFMLVHASSGFK
HSLREILQDPAVLAKMSDTKAAGEVKALEQFYMMLQCEPAKAFYGKKHVL
QAAESQAIETLLISDNLFRCQDVSLRKEYVNLVESIRDAGGEVKIFSSMH
ISGEQLAQLTGIAALLRFPMPELEDSDDDDDEDGAAGGVADSDSD*

BS08460.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:21:20
Subject Length Description Subject Range Query Range Score Percent Strand
pelo-PA 395 CG3959-PA 1..395 1..395 1999 100 Plus