Clone Sequence Records
BS08463.3prime Sequence
869 bp (801 high quality bases) assembled on 2006-01-10
> BS08463.3prime
ATGGTCTAGAAAGCTTCTAAATGATGGATATGTCCTTGACATCCTGCTTA
AGTTCGCTGTTATGGTTATTGGCAATAAAGTCGCGCCTTAAGGCGTTCCA
ATTCGGATCGGGATAATCCTTGAGGAGGCTCCAGTTCGGCGAGGGGACAT
CCGGCGAAAGCCAGTTAAAATCGGCCACATCCGTATAGTTGTTCTGTGCC
TTATTCAGTCCAGAAGCTAGGTAGTCGGCCTCCAGTTTGGAATAATCGTA
GTTGTACTCTCCGATCTCAATACTCTTGCAATCCTCGATTATTGCGCGGC
AGGTGACATGCATGTATATGCGAATGGACCGGGAGGAGTGCAACCTCAAC
TGCTGGCAGGCAATGGAGAGGGTGCAATCCTCGAGATTCTCGGCGAAGAA
GGAGCGTGCGATGGGGCCGCATAGCAGCGTGCATTTGGAGGCCCTGGAAA
CCTGCACAGAACCGGGATGACCCTGCAGTTCAACCAAACAGTGGTTCAGT
TTCGATATTGTGATGTCCTGGCCATTGACTTTAGCGGAATCCAGGACTAT
ATGCTCGTTCGTTCGATTGGCAATCGTCCACGTGAAATTGGAGCCTAGTT
TTTCTGGGACTTTACTGAGTTTCGCGTCGACTATATCCTTATTTGGAGGG
ACTTTTGGCTTTGTGACGGTCTTTTTGCCACTGAAACCAAACTTTTTCTT
GGGCAACAGGCGCTGGCGGGTTTCATCACTGACGGCGGTCAGGGTGTTAA
GGATATTCTGACAGGATTTGATCTTGAAGTCGGGCAGAAACATGGTGGAT
GCGGTGAGATATCGCTGCAGATCCTGGATCTCCACAGTTATGTCGGGGAA
GTTTCTGGCAAATCGGTTG
BS08463.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:07:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31961-PA | 1068 | CG31961-RA | 226..1068 | 859..17 | 4190 | 99.8 | Minus |
| CG31961-PB | 1068 | CG31961-RB | 226..1068 | 859..17 | 4190 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:13:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31961-RB | 1477 | CG31961-RB | 458..1311 | 869..17 | 4230 | 99.8 | Minus |
| CG31961-RA | 1333 | CG31961-RA | 314..1167 | 869..17 | 4230 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:13:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4186416..4187269 | 17..869 | 4205 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:13:11 has no hits.
BS08463.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:41:22 Download gff for
BS08463.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31961-PA | 215..1068 | 17..869 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:40:48 Download gff for
BS08463.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31961-PB | 215..1068 | 17..869 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:41:02 Download gff for
BS08463.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31961-RA | 314..1171 | 13..869 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:56:04 Download gff for
BS08463.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31961-RA | 314..1171 | 13..869 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:56:04 Download gff for
BS08463.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4186412..4187269 | 13..869 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:41:02 Download gff for
BS08463.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4186412..4187269 | 13..869 | 99 | | Plus |
BS08463.5prime Sequence
816 bp (754 high quality bases) assembled on 2006-01-10
> BS08463.5prime
GAAGTTATCAGTCGACATGGAAGGCGACGCGGAAAATCGCAAGGATCAAA
TCCTCGAGCGTTTGAACAAAAGAAACAAGGACAGGCAAAACTATTTGGAT
GTGAAATCGGAGCTGCGTTCCAAGGAAACAGTGCAGAACGAGGGCGTTGA
CTACTTCTACCAGACTTTCAGCCAAAAAACCATGGATATAGAGCAGCGAT
TAAAGGATGTGCAGTGCGGCGATGGCCAGCCAACCGATTTGGCCAGAAAC
TTCGCCGACATAACTGTGGAGATCCAGGATCTGCAGCGATATCTCACCGC
ATCCACCATGTTTCTGCCCGACTTCAAGATCAAATCCTGTCAGAATATCC
TTAACACCCTGACCGCCGTCAGTGATGAAACCCGCCAGCGCCTGTTGCCC
AAGAAAAAGTTTGGTTTCAGTGGCAAAAAGACCGTCACAAAGCCAAAAGT
CCCTCCAAATAAGGATATAGTCGACGCGAAACTCAGTAAAGTCCCAGAAA
AACTAGGCTCCAATTTCACGTGGACGATTGCCAATCGAACGAACGAGCAT
ATAGTCCTGGATTCCGCTAAAGTCAATGGCCAGGACATCACAATATCGAA
ACTGAACCACTGTTTGGTTGAACTGCAGGGTCATCCCGGTTCTGTGCAGG
TTTCCAGGGCCTCCAAATGCACGCTGCTATGCGGCCCCATCGCACGCTCC
TTCTTCGCCGAGAATCTCGAGGATTGCACCCTCTCCATTGCCTGCCAGCA
GTTGAGGTTGCACTCCTCCCGGTCCATTCGCATATACATGCATGTCACCT
GCCGCGCAATAATCGA
BS08463.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:07:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31961-PA | 1068 | CG31961-RA | 1..800 | 17..816 | 4000 | 100 | Plus |
| CG31961-PB | 1068 | CG31961-RB | 1..800 | 17..816 | 4000 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:49:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31961-RB | 1477 | CG31961-RB | 243..1043 | 16..816 | 4005 | 100 | Plus |
| CG31961-RA | 1333 | CG31961-RA | 99..899 | 16..816 | 4005 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:49:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4186684..4187484 | 816..16 | 4005 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:49:39 has no hits.
BS08463.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:41:23 Download gff for
BS08463.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31961-PA | 1..799 | 17..815 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:40:49 Download gff for
BS08463.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31961-PB | 1..799 | 17..815 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:11:27 Download gff for
BS08463.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31961-RA | 99..898 | 16..815 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:37:17 Download gff for
BS08463.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31961-RA | 99..898 | 16..815 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:37:17 Download gff for
BS08463.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4186685..4187484 | 16..815 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:11:27 Download gff for
BS08463.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4186685..4187484 | 16..815 | 100 | | Minus |
BS08463.complete Sequence
1100 bp (1100 high quality bases) assembled on 2006-01-18
GenBank Submission: FJ636170
> BS08463.complete
GAAGTTATCAGTCGACATGGAAGGCGACGCGGAAAATCGCAAGGATCAAA
TCCTCGAGCGTTTGAACAAAAGAAACAAGGACAGGCAAAACTATTTGGAT
GTGAAATCGGAGCTGCGTTCCAAGGAAACAGTGCAGAACGAGGGCGTTGA
CTACTTCTACCAGACTTTCAGCCAAAAAACCATGGATATAGAGCAGCGAT
TAAAGGATGTGCAGTGCGGCGATGGCCAGCCAACCGATTTGGCCAGAAAC
TTCGCCGACATAACTGTGGAGATCCAGGATCTGCAGCGATATCTCACCGC
ATCCACCATGTTTCTGCCCGACTTCAAGATCAAATCCTGTCAGAATATCC
TTAACACCCTGACCGCCGTCAGTGATGAAACCCGCCAGCGCCTGTTGCCC
AAGAAAAAGTTTGGTTTCAGTGGCAAAAAGACCGTCACAAAGCCAAAAGT
CCCTCCAAATAAGGATATAGTCGACGCGAAACTCAGTAAAGTCCCAGAAA
AACTAGGCTCCAATTTCACGTGGACGATTGCCAATCGAACGAACGAGCAT
ATAGTCCTGGATTCCGCTAAAGTCAATGGCCAGGACATCACAATATCGAA
ACTGAACCACTGTTTGGTTGAACTGCAGGGTCATCCCGGTTCTGTGCAGG
TTTCCAGGGCCTCCAAATGCACGCTGCTATGCGGCCCCATCGCACGCTCC
TTCTTCGCCGAGAATCTCGAGGATTGCACCCTCTCCATTGCCTGCCAGCA
GTTGAGGTTGCACTCCTCCCGGTCCATTCGCATATACATGCATGTCACCT
GCCGCGCAATAATCGAGGATTGCAAGAGTATTGAGATCGGAGAGTACAAC
TACGATTATTCCAAACTGGAGGCCGACTACCTAGCTTCTGGACTGAATAA
GGCACAGAACAACTATACGGATGTGGCCGATTTTAACTGGCTTTCGCCGG
ATGTCCCCTCGCCGAACTGGAGCCTCCTCAAGGATTATCCCGATCCGAAT
TGGAACGCCTTAAGGCGCGACTTTATTGCCAATAACCATAACAGCGAACT
TAAGCAGGATGTCAAGGACATATCCATCATTTAGAAGCTTTCTAGACCAT
BS08463.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:14:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31961-RB | 1068 | CG31961-PB | 1..1068 | 17..1084 | 5340 | 100 | Plus |
| CG31961-RA | 1068 | CG31961-PA | 1..1068 | 17..1084 | 5340 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:14:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31961-RB | 1477 | CG31961-RB | 243..1311 | 16..1084 | 5345 | 100 | Plus |
| CG31961-RA | 1333 | CG31961-RA | 99..1167 | 16..1084 | 5345 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:14:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4186416..4187484 | 1084..16 | 5345 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:14:18 has no hits.
BS08463.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:03:14 Download gff for
BS08463.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31961-RB | 1..1068 | 17..1084 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:41:11 Download gff for
BS08463.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31961-RB | 239..1311 | 16..1088 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:54:56 Download gff for
BS08463.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31961-RA | 100..1167 | 17..1084 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:03:15 Download gff for
BS08463.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31961-RB | 239..1311 | 16..1088 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:14:04 Download gff for
BS08463.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31961-RA | 100..1167 | 17..1084 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:14:04 Download gff for
BS08463.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4186416..4187483 | 17..1084 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:54:56 Download gff for
BS08463.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4186416..4187483 | 17..1084 | 100 | | Minus |
BS08463.pep Sequence
Translation from 16 to 1083
> BS08463.pep
MEGDAENRKDQILERLNKRNKDRQNYLDVKSELRSKETVQNEGVDYFYQT
FSQKTMDIEQRLKDVQCGDGQPTDLARNFADITVEIQDLQRYLTASTMFL
PDFKIKSCQNILNTLTAVSDETRQRLLPKKKFGFSGKKTVTKPKVPPNKD
IVDAKLSKVPEKLGSNFTWTIANRTNEHIVLDSAKVNGQDITISKLNHCL
VELQGHPGSVQVSRASKCTLLCGPIARSFFAENLEDCTLSIACQQLRLHS
SRSIRIYMHVTCRAIIEDCKSIEIGEYNYDYSKLEADYLASGLNKAQNNY
TDVADFNWLSPDVPSPNWSLLKDYPDPNWNALRRDFIANNHNSELKQDVK
DISII*
BS08463.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:21:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31961-PB | 355 | CG31961-PB | 1..355 | 1..355 | 1862 | 100 | Plus |
| CG31961-PA | 355 | CG31961-PA | 1..355 | 1..355 | 1862 | 100 | Plus |
