Clone BS08466 Report

Search the DGRC for BS08466

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:84
Well:66
Vector:pDNR-Dual
Associated Gene/Transcriptmdlc-RA
Protein status:BS08466.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08466.3prime Sequence

904 bp (822 high quality bases) assembled on 2006-01-10

> BS08466.3prime
ATGGTCTAGAAAGCTTTTAATCACTATCATCCGAAGAAATCTCCTGAGCT
TCCTCCCCTGCTTCCGCTTTATCCTCCTTTTTCCCAAATTCCTCCTCCTC
ATCACTATCTGAGTTTTCCATTGGGTTTGTCTTGAGGCGAGCTATCAGCT
CTTTGGCGGGATTGAAAATACCATTTGTTTGCTGGGAACAGATGATGCAG
CGCTGTGACTTTTTGTACTGGGCCAAGGCGCACTTTTCACAGAAATAGTG
CTTGCACTTTGTTACCACGGGATTGACAAAACTCTGTCGGCAGATGTGGC
ACTTGAAAGGCAGTGTTTCTTCATCGGAGTGAATCTCATACTTGGTATCA
TCGCCATCGGAGTCTACATCACCCGTTCGCTGATTTTCGTGATCCATTTC
CAATTGCCAGCCCGCTTTGTAATCACTGCGATCGTGCAGAAACTTACAGC
TGTCGCCAAAGCCGCAATATCCTGTTTCCTTGTAATCCTTGCATATATCC
GGCTGATAATCCCACCTGACAGTGGCCCTAAGATGGGCAGGAGCCCTAAT
TGGGCCACTTCGTACCATTCCGGAGCTGGCATTCCCTGCCGCTGTATCCT
GCTTCTTGTAGTACTGCGCATAGTTGTTAATTCCGCGATAGATCTTATCG
TCCGCCTTGCCCTCCAGCTCTTCGTTGATTTTCAGAGCTCGCGCATGAAT
TGCCTGCGCATCGCGATCCAATTCTGTGTCCATTTCGTTAATCGATGTAG
CTCCCTGATCTTGGGGTCCACTGGGCAGCGCCTCGCGTTTGGATTTGTAC
GCAATGCCCAGTTTATCATCGTCGGAGGCTGAGGATGAGCCATCATCACC
AACTCCCTCCGCCTGTCTCTTTGCTTTGCTCATTGTCTTGGTGCTCTGGA
AGTT

BS08466.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:07:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG4973-PA 1074 CG4973-RA 187..1074 904..17 4390 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:17:07
Subject Length Description Subject Range Query Range Score Percent Strand
mdlc-RA 1419 CG4973-RA 293..1182 904..15 4420 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:17:04
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20058098..20058746 904..256 3215 99.7 Minus
3R 32079331 3R 20058812..20059054 257..15 1215 100 Minus
Blast to na_te.dros performed on 2015-02-12 04:17:06 has no hits.

BS08466.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:41:26 Download gff for BS08466.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4973-PA 187..1074 17..904 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:40:55 Download gff for BS08466.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4973-PA 187..1074 17..904 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:42:53 Download gff for BS08466.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4973-RA 293..1187 10..904 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:03:37 Download gff for BS08466.3prime
Subject Subject Range Query Range Percent Splice Strand
mdlc-RA 293..1187 10..904 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:03:37 Download gff for BS08466.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 20058098..20058744 258..904 99 -> Minus
3R 20058812..20059059 10..257 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:42:53 Download gff for BS08466.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15883820..15884466 258..904 99 -> Minus
arm_3R 15884534..15884781 10..257 99   Minus

BS08466.5prime Sequence

840 bp (796 high quality bases) assembled on 2006-01-10

> BS08466.5prime
GAAGTTATCAGTCGACATGTCGGAAGAAGCGGCTAGCACCTCGTCCTTTG
GCTTCAAGAAGCGGAACCTCAAGAAGGGAGCTGGAATTCGTCGCAAAAAG
GAAACCAGCAGTGATGAATCTGCAAAAAGCAGCGATGAAGAGACCAAAGG
CAAAGCCAGTGCTCTGGTGCGAGCCGAGAACCGCCGAAAGCGCACGAATC
CCAACTTCCAGAGCACCAAGACAATGAGCAAAGCAAAGAGACAGGCGGGA
GGAGTTGGTGATGATGGCTCATCCTCAGCCTCCGACGATGATAAACTGGG
CATTGCGTACAAATCCAAACGCGAGGCGCTGCCCAGTGGACCCCAAGATC
AGGGAGCTACATCGATTAACGAAATGGACACAGAATTGGATCGCGATGCG
CAGGCAATTCATGCGCGAGCTCTGAAAATCAACGAAGAGCTGGAGGGCAA
GGCGGACGATAAGATCTATCGCGGAATTAACAACTATGCGCAGTACTACA
AGAAGCAGGATACAGCGGCAGGGAATGCCAGCTCCGGAATGGTACGAAGT
GGCCCAATTAGGGCTCCTGCCCATCTTAGGGCCACTGTCAGGTGGGATTA
TCAGCCGGATATATGCAAGGATTACAAGGAAACAGGATATTGCGGCTTTG
GCGACAGCTGTAAGTTTCTGCACGATCGCAGTGATTACAAAGCGGGCTGG
CAATTGGAAATGGATCACGAAAATCAGCGAACGGGTGATGTAGACTCCGA
TGGCGATGATACCAAGTATGAGATTCACTCCGATGAAGAAACACTGCCTT
TTCAGTGCCACATCTGCCGACAGAGTTTTGTCAATCCCGT

BS08466.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:07:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG4973-PA 1074 CG4973-RA 1..824 17..840 4070 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:40:42
Subject Length Description Subject Range Query Range Score Percent Strand
mdlc-RA 1419 CG4973-RA 107..930 17..840 4090 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:40:36
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20058017..20058735 122..840 3565 99.7 Plus
3R 32079331 3R 20057854..20057959 17..122 530 100 Plus
Blast to na_te.dros performed on 2015-02-11 17:40:39 has no hits.

BS08466.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:41:27 Download gff for BS08466.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4973-PA 1..824 17..840 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:40:56 Download gff for BS08466.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4973-PA 1..824 17..840 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:19:57 Download gff for BS08466.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4973-RA 105..930 14..840 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:28:24 Download gff for BS08466.5prime
Subject Subject Range Query Range Percent Splice Strand
mdlc-RA 105..930 14..840 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:28:24 Download gff for BS08466.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 20057852..20057959 14..122 99 -> Plus
3R 20058018..20058735 123..840 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:19:57 Download gff for BS08466.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15883574..15883681 14..122 99 -> Plus
arm_3R 15883740..15884457 123..840 99   Plus

BS08466.complete Sequence

1106 bp (1106 high quality bases) assembled on 2006-01-18

GenBank Submission: FJ636171

> BS08466.complete
GAAGTTATCAGTCGACATGTCGGAAGAAGCGGCTAGCACCTCGTCCTTTG
GCTTCAAGAAGCGGAACCTCAAGAAGGGAGCTGGAATTCGTCGCAAAAAG
GAAACCAGCAGTGATGAATCTGCAAAAAGCAGCGATGAAGAGACCAAAGG
CAAAGCCAGTGCTCTGGTGCGAGCCGAGAACCGCCGAAAGCGCACGAATC
CCAACTTCCAGAGCACCAAGACAATGAGCAAAGCAAAGAGACAGGCGGGA
GGAGTTGGTGATGATGGCTCATCCTCAGCCTCCGACGATGATAAACTGGG
CATTGCGTACAAATCCAAACGCGAGGCGCTGCCCAGTGGACCCCAAGATC
AGGGAGCTACATCGATTAACGAAATGGACACAGAATTGGATCGCGATGCG
CAGGCAATTCATGCGCGAGCTCTGAAAATCAACGAAGAGCTGGAGGGCAA
GGCGGACGATAAGATCTATCGCGGAATTAACAACTATGCGCAGTACTACA
AGAAGCAGGATACAGCGGCAGGGAATGCCAGCTCCGGAATGGTACGAAGT
GGCCCAATTAGGGCTCCTGCCCATCTTAGGGCCACTGTCAGGTGGGATTA
TCAGCCGGATATATGCAAGGATTACAAGGAAACAGGATATTGCGGCTTTG
GCGACAGCTGTAAGTTTCTGCACGATCGCAGTGATTACAAAGCGGGCTGG
CAATTGGAAATGGATCACGAAAATCAGCGAACGGGTGATGTAGACTCCGA
TGGCGATGATACCAAGTATGAGATTCACTCCGATGAAGAAACACTGCCTT
TCAAGTGCCACATCTGCCGACAGAGTTTTGTCAATCCCGTGGTAACAAAG
TGCAAGCACTATTTCTGTGAAAAGTGCGCCTTGGCCCAGTACAAAAAGTC
ACAGCGCTGCATCATCTGTTCCCAGCAAACAAATGGTATTTTCAATCCCG
CCAAAGAGCTGATAGCTCGCCTCAAGACAAACCCAATGGAAAACTCAGAT
AGTGATGAGGAGGAGGAATTTGGGAAAAAGGAGGATAAAGCGGAAGCAGG
GGAGGAAGCTCAGGAGATTTCTTCGGATGATAGTGATTAAAAGCTTTCTA
GACCAT

BS08466.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:50:42
Subject Length Description Subject Range Query Range Score Percent Strand
mdlc-RA 1074 CG4973-PA 1..1074 17..1090 5370 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:50:42
Subject Length Description Subject Range Query Range Score Percent Strand
mdlc-RA 1419 CG4973-RA 107..1182 17..1092 5380 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:50:39
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20058017..20058746 122..851 3650 100 Plus
3R 32079331 3R 20058812..20059054 850..1092 1215 100 Plus
3R 32079331 3R 20057854..20057959 17..122 530 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:50:41 has no hits.

BS08466.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:03:16 Download gff for BS08466.complete
Subject Subject Range Query Range Percent Splice Strand
CG4973-RA 1..1074 17..1090 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:41:13 Download gff for BS08466.complete
Subject Subject Range Query Range Percent Splice Strand
CG4973-RA 103..1185 14..1097 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:26:22 Download gff for BS08466.complete
Subject Subject Range Query Range Percent Splice Strand
CG4973-RA 107..1178 17..1088 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:03:16 Download gff for BS08466.complete
Subject Subject Range Query Range Percent Splice Strand
CG4973-RA 103..1185 14..1097 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:57:07 Download gff for BS08466.complete
Subject Subject Range Query Range Percent Splice Strand
mdlc-RA 107..1178 17..1088 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:57:07 Download gff for BS08466.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20057854..20057959 17..122 100 -> Plus
3R 20058018..20058744 123..849 100 -> Plus
3R 20058812..20059050 850..1088 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:26:22 Download gff for BS08466.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15883576..15883681 17..122 100 -> Plus
arm_3R 15883740..15884466 123..849 100 -> Plus
arm_3R 15884534..15884772 850..1088 100   Plus

BS08466.pep Sequence

Translation from 16 to 1089

> BS08466.pep
MSEEAASTSSFGFKKRNLKKGAGIRRKKETSSDESAKSSDEETKGKASAL
VRAENRRKRTNPNFQSTKTMSKAKRQAGGVGDDGSSSASDDDKLGIAYKS
KREALPSGPQDQGATSINEMDTELDRDAQAIHARALKINEELEGKADDKI
YRGINNYAQYYKKQDTAAGNASSGMVRSGPIRAPAHLRATVRWDYQPDIC
KDYKETGYCGFGDSCKFLHDRSDYKAGWQLEMDHENQRTGDVDSDGDDTK
YEIHSDEETLPFKCHICRQSFVNPVVTKCKHYFCEKCALAQYKKSQRCII
CSQQTNGIFNPAKELIARLKTNPMENSDSDEEEEFGKKEDKAEAGEEAQE
ISSDDSD*

BS08466.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:21:07
Subject Length Description Subject Range Query Range Score Percent Strand
mdlc-PA 357 CG4973-PA 1..357 1..357 1880 100 Plus