Clone Sequence Records
BS08466.3prime Sequence
904 bp (822 high quality bases) assembled on 2006-01-10
> BS08466.3prime
ATGGTCTAGAAAGCTTTTAATCACTATCATCCGAAGAAATCTCCTGAGCT
TCCTCCCCTGCTTCCGCTTTATCCTCCTTTTTCCCAAATTCCTCCTCCTC
ATCACTATCTGAGTTTTCCATTGGGTTTGTCTTGAGGCGAGCTATCAGCT
CTTTGGCGGGATTGAAAATACCATTTGTTTGCTGGGAACAGATGATGCAG
CGCTGTGACTTTTTGTACTGGGCCAAGGCGCACTTTTCACAGAAATAGTG
CTTGCACTTTGTTACCACGGGATTGACAAAACTCTGTCGGCAGATGTGGC
ACTTGAAAGGCAGTGTTTCTTCATCGGAGTGAATCTCATACTTGGTATCA
TCGCCATCGGAGTCTACATCACCCGTTCGCTGATTTTCGTGATCCATTTC
CAATTGCCAGCCCGCTTTGTAATCACTGCGATCGTGCAGAAACTTACAGC
TGTCGCCAAAGCCGCAATATCCTGTTTCCTTGTAATCCTTGCATATATCC
GGCTGATAATCCCACCTGACAGTGGCCCTAAGATGGGCAGGAGCCCTAAT
TGGGCCACTTCGTACCATTCCGGAGCTGGCATTCCCTGCCGCTGTATCCT
GCTTCTTGTAGTACTGCGCATAGTTGTTAATTCCGCGATAGATCTTATCG
TCCGCCTTGCCCTCCAGCTCTTCGTTGATTTTCAGAGCTCGCGCATGAAT
TGCCTGCGCATCGCGATCCAATTCTGTGTCCATTTCGTTAATCGATGTAG
CTCCCTGATCTTGGGGTCCACTGGGCAGCGCCTCGCGTTTGGATTTGTAC
GCAATGCCCAGTTTATCATCGTCGGAGGCTGAGGATGAGCCATCATCACC
AACTCCCTCCGCCTGTCTCTTTGCTTTGCTCATTGTCTTGGTGCTCTGGA
AGTT
BS08466.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:07:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4973-PA | 1074 | CG4973-RA | 187..1074 | 904..17 | 4390 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:17:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mdlc-RA | 1419 | CG4973-RA | 293..1182 | 904..15 | 4420 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:17:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20058098..20058746 | 904..256 | 3215 | 99.7 | Minus |
3R | 32079331 | 3R | 20058812..20059054 | 257..15 | 1215 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:17:06 has no hits.
BS08466.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:41:26 Download gff for
BS08466.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4973-PA | 187..1074 | 17..904 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:40:55 Download gff for
BS08466.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4973-PA | 187..1074 | 17..904 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:42:53 Download gff for
BS08466.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4973-RA | 293..1187 | 10..904 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:03:37 Download gff for
BS08466.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mdlc-RA | 293..1187 | 10..904 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:03:37 Download gff for
BS08466.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20058098..20058744 | 258..904 | 99 | -> | Minus |
3R | 20058812..20059059 | 10..257 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:42:53 Download gff for
BS08466.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 15883820..15884466 | 258..904 | 99 | -> | Minus |
arm_3R | 15884534..15884781 | 10..257 | 99 | | Minus |
BS08466.5prime Sequence
840 bp (796 high quality bases) assembled on 2006-01-10
> BS08466.5prime
GAAGTTATCAGTCGACATGTCGGAAGAAGCGGCTAGCACCTCGTCCTTTG
GCTTCAAGAAGCGGAACCTCAAGAAGGGAGCTGGAATTCGTCGCAAAAAG
GAAACCAGCAGTGATGAATCTGCAAAAAGCAGCGATGAAGAGACCAAAGG
CAAAGCCAGTGCTCTGGTGCGAGCCGAGAACCGCCGAAAGCGCACGAATC
CCAACTTCCAGAGCACCAAGACAATGAGCAAAGCAAAGAGACAGGCGGGA
GGAGTTGGTGATGATGGCTCATCCTCAGCCTCCGACGATGATAAACTGGG
CATTGCGTACAAATCCAAACGCGAGGCGCTGCCCAGTGGACCCCAAGATC
AGGGAGCTACATCGATTAACGAAATGGACACAGAATTGGATCGCGATGCG
CAGGCAATTCATGCGCGAGCTCTGAAAATCAACGAAGAGCTGGAGGGCAA
GGCGGACGATAAGATCTATCGCGGAATTAACAACTATGCGCAGTACTACA
AGAAGCAGGATACAGCGGCAGGGAATGCCAGCTCCGGAATGGTACGAAGT
GGCCCAATTAGGGCTCCTGCCCATCTTAGGGCCACTGTCAGGTGGGATTA
TCAGCCGGATATATGCAAGGATTACAAGGAAACAGGATATTGCGGCTTTG
GCGACAGCTGTAAGTTTCTGCACGATCGCAGTGATTACAAAGCGGGCTGG
CAATTGGAAATGGATCACGAAAATCAGCGAACGGGTGATGTAGACTCCGA
TGGCGATGATACCAAGTATGAGATTCACTCCGATGAAGAAACACTGCCTT
TTCAGTGCCACATCTGCCGACAGAGTTTTGTCAATCCCGT
BS08466.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:07:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4973-PA | 1074 | CG4973-RA | 1..824 | 17..840 | 4070 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:40:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mdlc-RA | 1419 | CG4973-RA | 107..930 | 17..840 | 4090 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:40:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20058017..20058735 | 122..840 | 3565 | 99.7 | Plus |
3R | 32079331 | 3R | 20057854..20057959 | 17..122 | 530 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:40:39 has no hits.
BS08466.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:41:27 Download gff for
BS08466.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4973-PA | 1..824 | 17..840 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:40:56 Download gff for
BS08466.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4973-PA | 1..824 | 17..840 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:19:57 Download gff for
BS08466.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4973-RA | 105..930 | 14..840 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:28:24 Download gff for
BS08466.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mdlc-RA | 105..930 | 14..840 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:28:24 Download gff for
BS08466.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20057852..20057959 | 14..122 | 99 | -> | Plus |
3R | 20058018..20058735 | 123..840 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:19:57 Download gff for
BS08466.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 15883574..15883681 | 14..122 | 99 | -> | Plus |
arm_3R | 15883740..15884457 | 123..840 | 99 | | Plus |
BS08466.complete Sequence
1106 bp (1106 high quality bases) assembled on 2006-01-18
GenBank Submission: FJ636171
> BS08466.complete
GAAGTTATCAGTCGACATGTCGGAAGAAGCGGCTAGCACCTCGTCCTTTG
GCTTCAAGAAGCGGAACCTCAAGAAGGGAGCTGGAATTCGTCGCAAAAAG
GAAACCAGCAGTGATGAATCTGCAAAAAGCAGCGATGAAGAGACCAAAGG
CAAAGCCAGTGCTCTGGTGCGAGCCGAGAACCGCCGAAAGCGCACGAATC
CCAACTTCCAGAGCACCAAGACAATGAGCAAAGCAAAGAGACAGGCGGGA
GGAGTTGGTGATGATGGCTCATCCTCAGCCTCCGACGATGATAAACTGGG
CATTGCGTACAAATCCAAACGCGAGGCGCTGCCCAGTGGACCCCAAGATC
AGGGAGCTACATCGATTAACGAAATGGACACAGAATTGGATCGCGATGCG
CAGGCAATTCATGCGCGAGCTCTGAAAATCAACGAAGAGCTGGAGGGCAA
GGCGGACGATAAGATCTATCGCGGAATTAACAACTATGCGCAGTACTACA
AGAAGCAGGATACAGCGGCAGGGAATGCCAGCTCCGGAATGGTACGAAGT
GGCCCAATTAGGGCTCCTGCCCATCTTAGGGCCACTGTCAGGTGGGATTA
TCAGCCGGATATATGCAAGGATTACAAGGAAACAGGATATTGCGGCTTTG
GCGACAGCTGTAAGTTTCTGCACGATCGCAGTGATTACAAAGCGGGCTGG
CAATTGGAAATGGATCACGAAAATCAGCGAACGGGTGATGTAGACTCCGA
TGGCGATGATACCAAGTATGAGATTCACTCCGATGAAGAAACACTGCCTT
TCAAGTGCCACATCTGCCGACAGAGTTTTGTCAATCCCGTGGTAACAAAG
TGCAAGCACTATTTCTGTGAAAAGTGCGCCTTGGCCCAGTACAAAAAGTC
ACAGCGCTGCATCATCTGTTCCCAGCAAACAAATGGTATTTTCAATCCCG
CCAAAGAGCTGATAGCTCGCCTCAAGACAAACCCAATGGAAAACTCAGAT
AGTGATGAGGAGGAGGAATTTGGGAAAAAGGAGGATAAAGCGGAAGCAGG
GGAGGAAGCTCAGGAGATTTCTTCGGATGATAGTGATTAAAAGCTTTCTA
GACCAT
BS08466.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:50:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mdlc-RA | 1074 | CG4973-PA | 1..1074 | 17..1090 | 5370 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:50:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mdlc-RA | 1419 | CG4973-RA | 107..1182 | 17..1092 | 5380 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:50:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20058017..20058746 | 122..851 | 3650 | 100 | Plus |
3R | 32079331 | 3R | 20058812..20059054 | 850..1092 | 1215 | 100 | Plus |
3R | 32079331 | 3R | 20057854..20057959 | 17..122 | 530 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:50:41 has no hits.
BS08466.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:03:16 Download gff for
BS08466.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4973-RA | 1..1074 | 17..1090 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:41:13 Download gff for
BS08466.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4973-RA | 103..1185 | 14..1097 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:26:22 Download gff for
BS08466.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4973-RA | 107..1178 | 17..1088 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:03:16 Download gff for
BS08466.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4973-RA | 103..1185 | 14..1097 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:57:07 Download gff for
BS08466.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mdlc-RA | 107..1178 | 17..1088 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:57:07 Download gff for
BS08466.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20057854..20057959 | 17..122 | 100 | -> | Plus |
3R | 20058018..20058744 | 123..849 | 100 | -> | Plus |
3R | 20058812..20059050 | 850..1088 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:26:22 Download gff for
BS08466.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 15883576..15883681 | 17..122 | 100 | -> | Plus |
arm_3R | 15883740..15884466 | 123..849 | 100 | -> | Plus |
arm_3R | 15884534..15884772 | 850..1088 | 100 | | Plus |
BS08466.pep Sequence
Translation from 16 to 1089
> BS08466.pep
MSEEAASTSSFGFKKRNLKKGAGIRRKKETSSDESAKSSDEETKGKASAL
VRAENRRKRTNPNFQSTKTMSKAKRQAGGVGDDGSSSASDDDKLGIAYKS
KREALPSGPQDQGATSINEMDTELDRDAQAIHARALKINEELEGKADDKI
YRGINNYAQYYKKQDTAAGNASSGMVRSGPIRAPAHLRATVRWDYQPDIC
KDYKETGYCGFGDSCKFLHDRSDYKAGWQLEMDHENQRTGDVDSDGDDTK
YEIHSDEETLPFKCHICRQSFVNPVVTKCKHYFCEKCALAQYKKSQRCII
CSQQTNGIFNPAKELIARLKTNPMENSDSDEEEEFGKKEDKAEAGEEAQE
ISSDDSD*
BS08466.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:21:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mdlc-PA | 357 | CG4973-PA | 1..357 | 1..357 | 1880 | 100 | Plus |