Clone BS08467 Report

Search the DGRC for BS08467

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:84
Well:67
Vector:pDNR-Dual
Associated Gene/TranscriptCG31637-RA
Protein status:BS08467.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08467.3prime Sequence

882 bp (765 high quality bases) assembled on 2006-01-10

> BS08467.3prime
ATGGTCTAGAAAGCTTTCACGTGAACGGTGGCGGCATAACCATCGGATCG
AAGGTCTGCTGGGTGGTGGAGAAGTTGTTGAAGTTCTCGATGCGGCGATA
GCCCCACAAATCCATCGCTTCAGTGCAGACATCCTGGATTTGCTTGATCT
CTTCTGGCTTGAGATCCTGCATCCAATGGAATGGCGCTGATCTGGAATCT
CGATATGTGGAACTGACACCTCCAATGTTGACCTTGGTGTGCGTGTCCAA
AAACTCCTCCACTGCAGGATCAAATGGCAAGCCATAGAACTGCAAGATGT
CCTGGGTCATCTCACTGGGACTCAAGGATAGGTCCTCATAACGAACAGTC
CTAAAACGAGACGGATATTTCAGCAACAGCACCTCCGCTGTCTTGTAGTC
ATCCCGCAGATCCTGGCACACCAGTCGTGGATCCTCGCAGTCCTCGTTGC
CTCCGCACCACACTCGATGTCGCCTCGACTGCATCGTACCTCGTGGATCT
CGCACCAGCAGCACGATCCGCACGCTGGAGAGACTTTGGTCCTCGAGCAG
CTTTTCGGCCTGGGCGAGTCGCAGGCGGACGGTCTTCATGCTCTGGATGG
GGAAGAGGCGGCAGAAGCGCGTGAGGAAGGCTGGACGCCAGCAGAAGCGC
GGGAACTCCCGGCAGACGTCCCACAGTCGGGTGTTGTGCTCGAACAGATA
GGTGTGCGTCTTGCCGAAGTTCAGATAGTCGATCATGTCGGCGTAGTCGC
AGTTGAGCAGGTTCTTCAGGTTCTGCACGGCCAGCTCCTGATCGTCAGGA
TCGCGGATCTGCTTGATGCCGAAGTCGAGCAGCGGCTCATAGTGATAGAA
GTTGCCCGGTATCGAGTTGAGAATGTCACCCA

BS08467.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:07:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG31637-PA 1461 CG31637-RA 596..1461 882..17 4330 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:19:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG31637-RB 2595 CG31637-RB 825..1691 882..16 4335 100 Minus
CG31637-RA 2672 CG31637-RA 825..1691 882..16 4335 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:19:55
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6499471..6499819 882..534 1745 100 Minus
2L 23513712 2L 6525617..6525820 352..149 1020 100 Minus
2L 23513712 2L 6525366..6525551 535..350 930 100 Minus
2L 23513712 2L 6525881..6526015 150..16 675 100 Minus
Blast to na_te.dros performed on 2015-02-10 18:19:56 has no hits.

BS08467.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:41:28 Download gff for BS08467.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31637-PA 597..1461 17..881 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:40:57 Download gff for BS08467.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31637-PA 597..1461 17..881 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:23:25 Download gff for BS08467.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31637-RA 826..1701 6..881 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:45:22 Download gff for BS08467.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31637-RA 826..1701 6..881 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:45:22 Download gff for BS08467.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 6525619..6525820 149..350 100 -> Minus
2L 6525883..6526025 6..148 97   Minus
2L 6525368..6525550 351..533 100 -> Minus
2L 6499472..6499819 534..881 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:23:25 Download gff for BS08467.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6499472..6499819 534..881 100 -> Minus
arm_2L 6525368..6525550 351..533 100 -> Minus
arm_2L 6525619..6525820 149..350 100 -> Minus
arm_2L 6525883..6526025 6..148 97   Minus

BS08467.5prime Sequence

905 bp (858 high quality bases) assembled on 2006-01-10

> BS08467.5prime
GAAGTTATCAGTCGACATGAGCACGGGCATTGGCAGCAGCAGCAGCAGCA
CGGAGGAGCAGCAGCACCTGGAACTGAGCGCGGACTTGGAGGCGTGCTCC
CTGCTTGGCCCGCAGGACCCGTCGAACGTCGATACCGGCAGGACACGCGC
TAAGCAGCGACTCAGCTTGAACGGAAAGCGGCGCCGCAGCCGGATGTCGC
GCAGGGCCAATCTGATCGGCATCTGCGGCGTGAGCAGCCTGTGCATCCTG
CTGCTGATCGCCACCACCCAGCACCGTCCGCTGACCACGCCGTTTAATCA
GTCGGCTGGGCGGGATCAGGGCGCGTCCGTAGATGGCGGTCCATCCAATT
CGCTGGCGCGCAGCGCCTTCTACGATCGCTTCCAGCAGCAATTGCAGCAG
CAGCAGCAGTCGTCGCAGACGGCCGTCTACAATCTGACAGCTACTATAGT
GGATGTCCTGTCGGCTCAACGGTCGCGCATCCTGGCCGAAATGGAGAACT
TCGAGTATCCGCGCGGCGGCGCCGAGCGTCTGACGGACATGACGCCGGAG
ACGAACGGCACCCCGGTGCGCAGTGTGGTGGTCACCTCATGGCGCTCCGG
CTCCACCTTCCTGGGTGACATTCTCAACTCGATACCGGGCAACTTCTATC
ACTATGAGCCGCTGCTCGACTTCGGCATCAAGCAGATCCGCGATCCTGAC
GATCAGGAGCTGGCCGTGCAGAACCTGAAGAACCTGCTCAACTGCGACTA
CGCCGACATGATCGACTATCTGAACTTCGGCAAGACGCACACCTATCTGT
TCGAGCACAACACCCGACTGTGGGACGTCTGCCGGGAGTTCCCGCGCTTC
TGCTGGCGTCCAGCCTCCTCACGCGCTTCTGCCGCCTCTTCCCCATCCAG
AGCAT

BS08467.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:07:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG31637-PA 1461 CG31637-RA 1..850 17..866 4250 100 Plus
CG31637-PA 1461 CG31637-RA 851..890 866..905 200 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:50:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG31637-RB 2595 CG31637-RB 230..1119 17..905 4425 99.9 Plus
CG31637-RA 2672 CG31637-RA 230..1119 17..905 4425 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:49:59
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6498876..6499765 17..905 4400 99.9 Plus
Blast to na_te.dros performed on 2015-02-11 10:50:01 has no hits.

BS08467.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:41:29 Download gff for BS08467.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31637-PA 1..890 17..905 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:40:59 Download gff for BS08467.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31637-PA 1..890 17..905 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:11:30 Download gff for BS08467.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31637-RA 230..1119 17..905 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:38:05 Download gff for BS08467.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31637-RA 230..1119 17..905 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:38:05 Download gff for BS08467.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 6498876..6499765 17..905 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:11:30 Download gff for BS08467.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6498876..6499765 17..905 99   Plus

BS08467.complete Sequence

1493 bp (1493 high quality bases) assembled on 2006-01-18

GenBank Submission: FJ636172

> BS08467.complete
GAAGTTATCAGTCGACATGAGCACGGGCATTGGCAGCAGCAGCAGCAGCA
CGGAGGAGCAGCAGCACCTGGAACTGAGCGCGGACTTGGAGGCGTGCTCC
CTGCTTGGCCCGCAGGACCCGTCGAACGTCGATACCGGCAGGACACGCGC
TAAGCAGCGACTCAGCTTGAACGGAAAGCGGCGCCGCAGCCGGATGTCGC
GCAGGGCCAATCTGATCGGCATCTGCGGCGTGAGCAGCCTGTGCATCCTG
CTGCTGATCGCCACCACCCAGCACCGTCCGCTGACCACGCCGTTTAATCA
GTCGGCTGGGCGGGATCAGGGCGCGTCCGTAGATGGCGGTCCATCCAATT
CGCTGGCGCGCAGCGCCTTCTACGATCGCTTCCAGCAGCAATTGCAGCAG
CAGCAGCAGTCGTCGCAGACGGCCGTCTACAATCTGACAGCTACTATAGT
GGATGTCCTGTCGGCTCAACGGTCGCGCATCCTGGCCGAAATGGAGAACT
TCGAGTATCCGCGCGGCGGCGCCGAGCGTCTGACGGACATGACGCCGGAG
ACGAACGGCACCCCGGTGCGCAGTGTGGTGGTCACCTCATGGCGCTCCGG
CTCCACCTTCCTGGGTGACATTCTCAACTCGATACCGGGCAACTTCTATC
ACTATGAGCCGCTGCTCGACTTCGGCATCAAGCAGATCCGCGATCCTGAC
GATCAGGAGCTGGCCGTGCAGAACCTGAAGAACCTGCTCAACTGCGACTA
CGCCGACATGATCGACTATCTGAACTTCGGCAAGACGCACACCTATCTGT
TCGAGCACAACACCCGACTGTGGGACGTCTGCCGGGAGTTCCCGCGCTTC
TGCTGGCGTCCAGCCTTCCTCACGCGCTTCTGCCGCCTCTTCCCCATCCA
GAGCATGAAGACCGTCCGCCTGCGACTCGCCCAGGCCGAAAAGCTGCTCG
AGGACCAAAGTCTCTCCAGCGTGCGGATCGTGCTGCTGGTGCGAGATCCA
CGAGGTACGATGCAGTCGAGGCGACATCGAGTGTGGTGCGGAGGCAACGA
GGACTGCGAGGATCCACGACTGGTGTGCCAGGATCTGCGGGATGACTACA
AGACAGCGGAGGTGCTGTTGCTGAAATATCCGTCTCGTTTTAGGACTGTT
CGTTATGAGGACCTATCCTTGAGTCCCAGTGAGATGACCCAGGACATCTT
GCAGTTCTATGGCTTGCCATTTGATCCTGCAGTGGAGGAGTTTTTGGACA
CGCACACCAAGGTCAACATTGGAGGTGTCAGTTCCACATATCGAGATTCC
AGATCAGCGCCATTCCATTGGATGCAGGATCTCAAGCCAGAAGAGATCAA
GCAAATCCAGGATGTCTGCACTGAAGCGATGGATTTGTGGGGCTATCGCC
GCATCGAGAACTTCAACAACTTCTCCACCACCCAGCAGACCTTCGATCCG
ATGGTTATGCCGCCACCGTTCACGTGAAAGCTTTCTAGACCAT

BS08467.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:32:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG31637-RB 1461 CG31637-PB 1..1461 17..1477 7305 100 Plus
CG31637-RA 1461 CG31637-PA 1..1461 17..1477 7305 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:32:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG31637-RB 2595 CG31637-RB 230..1691 17..1478 7310 100 Plus
CG31637-RA 2672 CG31637-RA 230..1691 17..1478 7310 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:32:04
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6498876..6499819 17..960 4720 100 Plus
2L 23513712 2L 6525617..6525820 1142..1345 1020 100 Plus
2L 23513712 2L 6525366..6525551 959..1144 930 100 Plus
2L 23513712 2L 6525881..6526015 1344..1478 675 100 Plus
Blast to na_te.dros performed on 2014-11-28 05:32:04 has no hits.

BS08467.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:03:04 Download gff for BS08467.complete
Subject Subject Range Query Range Percent Splice Strand
CG31637-RA 1..1461 17..1477 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:43:08 Download gff for BS08467.complete
Subject Subject Range Query Range Percent Splice Strand
CG31637-RA 235..1694 17..1476 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:15:13 Download gff for BS08467.complete
Subject Subject Range Query Range Percent Splice Strand
CG31637-RA 230..1689 17..1476 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:03:04 Download gff for BS08467.complete
Subject Subject Range Query Range Percent Splice Strand
CG31637-RA 235..1706 17..1488 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:13:11 Download gff for BS08467.complete
Subject Subject Range Query Range Percent Splice Strand
CG31637-RA 230..1689 17..1476 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:13:11 Download gff for BS08467.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6525619..6525820 1144..1345 100 -> Plus
2L 6525883..6526013 1346..1476 100   Plus
2L 6498876..6499819 17..960 100 -> Plus
2L 6525368..6525550 961..1143 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:15:13 Download gff for BS08467.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6498876..6499819 17..960 100 -> Plus
arm_2L 6525368..6525550 961..1143 100 -> Plus
arm_2L 6525619..6525820 1144..1345 100 -> Plus
arm_2L 6525883..6526013 1346..1476 100   Plus

BS08467.pep Sequence

Translation from 16 to 1476

> BS08467.pep
MSTGIGSSSSSTEEQQHLELSADLEACSLLGPQDPSNVDTGRTRAKQRLS
LNGKRRRSRMSRRANLIGICGVSSLCILLLIATTQHRPLTTPFNQSAGRD
QGASVDGGPSNSLARSAFYDRFQQQLQQQQQSSQTAVYNLTATIVDVLSA
QRSRILAEMENFEYPRGGAERLTDMTPETNGTPVRSVVVTSWRSGSTFLG
DILNSIPGNFYHYEPLLDFGIKQIRDPDDQELAVQNLKNLLNCDYADMID
YLNFGKTHTYLFEHNTRLWDVCREFPRFCWRPAFLTRFCRLFPIQSMKTV
RLRLAQAEKLLEDQSLSSVRIVLLVRDPRGTMQSRRHRVWCGGNEDCEDP
RLVCQDLRDDYKTAEVLLLKYPSRFRTVRYEDLSLSPSEMTQDILQFYGL
PFDPAVEEFLDTHTKVNIGGVSSTYRDSRSAPFHWMQDLKPEEIKQIQDV
CTEAMDLWGYRRIENFNNFSTTQQTFDPMVMPPPFT*

BS08467.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:21:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG31637-PB 486 CG31637-PB 1..486 1..486 2556 100 Plus
CG31637-PA 486 CG31637-PA 1..486 1..486 2556 100 Plus
CG9550-PA 363 CG9550-PA 54..359 172..480 500 35.4 Plus