Clone Sequence Records
BS08467.3prime Sequence
882 bp (765 high quality bases) assembled on 2006-01-10
> BS08467.3prime
ATGGTCTAGAAAGCTTTCACGTGAACGGTGGCGGCATAACCATCGGATCG
AAGGTCTGCTGGGTGGTGGAGAAGTTGTTGAAGTTCTCGATGCGGCGATA
GCCCCACAAATCCATCGCTTCAGTGCAGACATCCTGGATTTGCTTGATCT
CTTCTGGCTTGAGATCCTGCATCCAATGGAATGGCGCTGATCTGGAATCT
CGATATGTGGAACTGACACCTCCAATGTTGACCTTGGTGTGCGTGTCCAA
AAACTCCTCCACTGCAGGATCAAATGGCAAGCCATAGAACTGCAAGATGT
CCTGGGTCATCTCACTGGGACTCAAGGATAGGTCCTCATAACGAACAGTC
CTAAAACGAGACGGATATTTCAGCAACAGCACCTCCGCTGTCTTGTAGTC
ATCCCGCAGATCCTGGCACACCAGTCGTGGATCCTCGCAGTCCTCGTTGC
CTCCGCACCACACTCGATGTCGCCTCGACTGCATCGTACCTCGTGGATCT
CGCACCAGCAGCACGATCCGCACGCTGGAGAGACTTTGGTCCTCGAGCAG
CTTTTCGGCCTGGGCGAGTCGCAGGCGGACGGTCTTCATGCTCTGGATGG
GGAAGAGGCGGCAGAAGCGCGTGAGGAAGGCTGGACGCCAGCAGAAGCGC
GGGAACTCCCGGCAGACGTCCCACAGTCGGGTGTTGTGCTCGAACAGATA
GGTGTGCGTCTTGCCGAAGTTCAGATAGTCGATCATGTCGGCGTAGTCGC
AGTTGAGCAGGTTCTTCAGGTTCTGCACGGCCAGCTCCTGATCGTCAGGA
TCGCGGATCTGCTTGATGCCGAAGTCGAGCAGCGGCTCATAGTGATAGAA
GTTGCCCGGTATCGAGTTGAGAATGTCACCCA
BS08467.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:07:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31637-PA | 1461 | CG31637-RA | 596..1461 | 882..17 | 4330 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:19:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31637-RB | 2595 | CG31637-RB | 825..1691 | 882..16 | 4335 | 100 | Minus |
CG31637-RA | 2672 | CG31637-RA | 825..1691 | 882..16 | 4335 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:19:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6499471..6499819 | 882..534 | 1745 | 100 | Minus |
2L | 23513712 | 2L | 6525617..6525820 | 352..149 | 1020 | 100 | Minus |
2L | 23513712 | 2L | 6525366..6525551 | 535..350 | 930 | 100 | Minus |
2L | 23513712 | 2L | 6525881..6526015 | 150..16 | 675 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:19:56 has no hits.
BS08467.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:41:28 Download gff for
BS08467.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31637-PA | 597..1461 | 17..881 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:40:57 Download gff for
BS08467.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31637-PA | 597..1461 | 17..881 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:23:25 Download gff for
BS08467.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31637-RA | 826..1701 | 6..881 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:45:22 Download gff for
BS08467.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31637-RA | 826..1701 | 6..881 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:45:22 Download gff for
BS08467.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6525619..6525820 | 149..350 | 100 | -> | Minus |
2L | 6525883..6526025 | 6..148 | 97 | | Minus |
2L | 6525368..6525550 | 351..533 | 100 | -> | Minus |
2L | 6499472..6499819 | 534..881 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:23:25 Download gff for
BS08467.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6499472..6499819 | 534..881 | 100 | -> | Minus |
arm_2L | 6525368..6525550 | 351..533 | 100 | -> | Minus |
arm_2L | 6525619..6525820 | 149..350 | 100 | -> | Minus |
arm_2L | 6525883..6526025 | 6..148 | 97 | | Minus |
BS08467.5prime Sequence
905 bp (858 high quality bases) assembled on 2006-01-10
> BS08467.5prime
GAAGTTATCAGTCGACATGAGCACGGGCATTGGCAGCAGCAGCAGCAGCA
CGGAGGAGCAGCAGCACCTGGAACTGAGCGCGGACTTGGAGGCGTGCTCC
CTGCTTGGCCCGCAGGACCCGTCGAACGTCGATACCGGCAGGACACGCGC
TAAGCAGCGACTCAGCTTGAACGGAAAGCGGCGCCGCAGCCGGATGTCGC
GCAGGGCCAATCTGATCGGCATCTGCGGCGTGAGCAGCCTGTGCATCCTG
CTGCTGATCGCCACCACCCAGCACCGTCCGCTGACCACGCCGTTTAATCA
GTCGGCTGGGCGGGATCAGGGCGCGTCCGTAGATGGCGGTCCATCCAATT
CGCTGGCGCGCAGCGCCTTCTACGATCGCTTCCAGCAGCAATTGCAGCAG
CAGCAGCAGTCGTCGCAGACGGCCGTCTACAATCTGACAGCTACTATAGT
GGATGTCCTGTCGGCTCAACGGTCGCGCATCCTGGCCGAAATGGAGAACT
TCGAGTATCCGCGCGGCGGCGCCGAGCGTCTGACGGACATGACGCCGGAG
ACGAACGGCACCCCGGTGCGCAGTGTGGTGGTCACCTCATGGCGCTCCGG
CTCCACCTTCCTGGGTGACATTCTCAACTCGATACCGGGCAACTTCTATC
ACTATGAGCCGCTGCTCGACTTCGGCATCAAGCAGATCCGCGATCCTGAC
GATCAGGAGCTGGCCGTGCAGAACCTGAAGAACCTGCTCAACTGCGACTA
CGCCGACATGATCGACTATCTGAACTTCGGCAAGACGCACACCTATCTGT
TCGAGCACAACACCCGACTGTGGGACGTCTGCCGGGAGTTCCCGCGCTTC
TGCTGGCGTCCAGCCTCCTCACGCGCTTCTGCCGCCTCTTCCCCATCCAG
AGCAT
BS08467.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:07:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31637-PA | 1461 | CG31637-RA | 1..850 | 17..866 | 4250 | 100 | Plus |
CG31637-PA | 1461 | CG31637-RA | 851..890 | 866..905 | 200 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:50:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31637-RB | 2595 | CG31637-RB | 230..1119 | 17..905 | 4425 | 99.9 | Plus |
CG31637-RA | 2672 | CG31637-RA | 230..1119 | 17..905 | 4425 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:49:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6498876..6499765 | 17..905 | 4400 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:50:01 has no hits.
BS08467.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:41:29 Download gff for
BS08467.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31637-PA | 1..890 | 17..905 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:40:59 Download gff for
BS08467.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31637-PA | 1..890 | 17..905 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:11:30 Download gff for
BS08467.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31637-RA | 230..1119 | 17..905 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:38:05 Download gff for
BS08467.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31637-RA | 230..1119 | 17..905 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:38:05 Download gff for
BS08467.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6498876..6499765 | 17..905 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:11:30 Download gff for
BS08467.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6498876..6499765 | 17..905 | 99 | | Plus |
BS08467.complete Sequence
1493 bp (1493 high quality bases) assembled on 2006-01-18
GenBank Submission: FJ636172
> BS08467.complete
GAAGTTATCAGTCGACATGAGCACGGGCATTGGCAGCAGCAGCAGCAGCA
CGGAGGAGCAGCAGCACCTGGAACTGAGCGCGGACTTGGAGGCGTGCTCC
CTGCTTGGCCCGCAGGACCCGTCGAACGTCGATACCGGCAGGACACGCGC
TAAGCAGCGACTCAGCTTGAACGGAAAGCGGCGCCGCAGCCGGATGTCGC
GCAGGGCCAATCTGATCGGCATCTGCGGCGTGAGCAGCCTGTGCATCCTG
CTGCTGATCGCCACCACCCAGCACCGTCCGCTGACCACGCCGTTTAATCA
GTCGGCTGGGCGGGATCAGGGCGCGTCCGTAGATGGCGGTCCATCCAATT
CGCTGGCGCGCAGCGCCTTCTACGATCGCTTCCAGCAGCAATTGCAGCAG
CAGCAGCAGTCGTCGCAGACGGCCGTCTACAATCTGACAGCTACTATAGT
GGATGTCCTGTCGGCTCAACGGTCGCGCATCCTGGCCGAAATGGAGAACT
TCGAGTATCCGCGCGGCGGCGCCGAGCGTCTGACGGACATGACGCCGGAG
ACGAACGGCACCCCGGTGCGCAGTGTGGTGGTCACCTCATGGCGCTCCGG
CTCCACCTTCCTGGGTGACATTCTCAACTCGATACCGGGCAACTTCTATC
ACTATGAGCCGCTGCTCGACTTCGGCATCAAGCAGATCCGCGATCCTGAC
GATCAGGAGCTGGCCGTGCAGAACCTGAAGAACCTGCTCAACTGCGACTA
CGCCGACATGATCGACTATCTGAACTTCGGCAAGACGCACACCTATCTGT
TCGAGCACAACACCCGACTGTGGGACGTCTGCCGGGAGTTCCCGCGCTTC
TGCTGGCGTCCAGCCTTCCTCACGCGCTTCTGCCGCCTCTTCCCCATCCA
GAGCATGAAGACCGTCCGCCTGCGACTCGCCCAGGCCGAAAAGCTGCTCG
AGGACCAAAGTCTCTCCAGCGTGCGGATCGTGCTGCTGGTGCGAGATCCA
CGAGGTACGATGCAGTCGAGGCGACATCGAGTGTGGTGCGGAGGCAACGA
GGACTGCGAGGATCCACGACTGGTGTGCCAGGATCTGCGGGATGACTACA
AGACAGCGGAGGTGCTGTTGCTGAAATATCCGTCTCGTTTTAGGACTGTT
CGTTATGAGGACCTATCCTTGAGTCCCAGTGAGATGACCCAGGACATCTT
GCAGTTCTATGGCTTGCCATTTGATCCTGCAGTGGAGGAGTTTTTGGACA
CGCACACCAAGGTCAACATTGGAGGTGTCAGTTCCACATATCGAGATTCC
AGATCAGCGCCATTCCATTGGATGCAGGATCTCAAGCCAGAAGAGATCAA
GCAAATCCAGGATGTCTGCACTGAAGCGATGGATTTGTGGGGCTATCGCC
GCATCGAGAACTTCAACAACTTCTCCACCACCCAGCAGACCTTCGATCCG
ATGGTTATGCCGCCACCGTTCACGTGAAAGCTTTCTAGACCAT
BS08467.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:32:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31637-RB | 1461 | CG31637-PB | 1..1461 | 17..1477 | 7305 | 100 | Plus |
CG31637-RA | 1461 | CG31637-PA | 1..1461 | 17..1477 | 7305 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:32:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31637-RB | 2595 | CG31637-RB | 230..1691 | 17..1478 | 7310 | 100 | Plus |
CG31637-RA | 2672 | CG31637-RA | 230..1691 | 17..1478 | 7310 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:32:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6498876..6499819 | 17..960 | 4720 | 100 | Plus |
2L | 23513712 | 2L | 6525617..6525820 | 1142..1345 | 1020 | 100 | Plus |
2L | 23513712 | 2L | 6525366..6525551 | 959..1144 | 930 | 100 | Plus |
2L | 23513712 | 2L | 6525881..6526015 | 1344..1478 | 675 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 05:32:04 has no hits.
BS08467.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:03:04 Download gff for
BS08467.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31637-RA | 1..1461 | 17..1477 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:43:08 Download gff for
BS08467.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31637-RA | 235..1694 | 17..1476 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:15:13 Download gff for
BS08467.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31637-RA | 230..1689 | 17..1476 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:03:04 Download gff for
BS08467.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31637-RA | 235..1706 | 17..1488 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:13:11 Download gff for
BS08467.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31637-RA | 230..1689 | 17..1476 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:13:11 Download gff for
BS08467.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6525619..6525820 | 1144..1345 | 100 | -> | Plus |
2L | 6525883..6526013 | 1346..1476 | 100 | | Plus |
2L | 6498876..6499819 | 17..960 | 100 | -> | Plus |
2L | 6525368..6525550 | 961..1143 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:15:13 Download gff for
BS08467.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6498876..6499819 | 17..960 | 100 | -> | Plus |
arm_2L | 6525368..6525550 | 961..1143 | 100 | -> | Plus |
arm_2L | 6525619..6525820 | 1144..1345 | 100 | -> | Plus |
arm_2L | 6525883..6526013 | 1346..1476 | 100 | | Plus |
BS08467.pep Sequence
Translation from 16 to 1476
> BS08467.pep
MSTGIGSSSSSTEEQQHLELSADLEACSLLGPQDPSNVDTGRTRAKQRLS
LNGKRRRSRMSRRANLIGICGVSSLCILLLIATTQHRPLTTPFNQSAGRD
QGASVDGGPSNSLARSAFYDRFQQQLQQQQQSSQTAVYNLTATIVDVLSA
QRSRILAEMENFEYPRGGAERLTDMTPETNGTPVRSVVVTSWRSGSTFLG
DILNSIPGNFYHYEPLLDFGIKQIRDPDDQELAVQNLKNLLNCDYADMID
YLNFGKTHTYLFEHNTRLWDVCREFPRFCWRPAFLTRFCRLFPIQSMKTV
RLRLAQAEKLLEDQSLSSVRIVLLVRDPRGTMQSRRHRVWCGGNEDCEDP
RLVCQDLRDDYKTAEVLLLKYPSRFRTVRYEDLSLSPSEMTQDILQFYGL
PFDPAVEEFLDTHTKVNIGGVSSTYRDSRSAPFHWMQDLKPEEIKQIQDV
CTEAMDLWGYRRIENFNNFSTTQQTFDPMVMPPPFT*
BS08467.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:21:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31637-PB | 486 | CG31637-PB | 1..486 | 1..486 | 2556 | 100 | Plus |
CG31637-PA | 486 | CG31637-PA | 1..486 | 1..486 | 2556 | 100 | Plus |
CG9550-PA | 363 | CG9550-PA | 54..359 | 172..480 | 500 | 35.4 | Plus |