Clone Sequence Records
BS08471.3prime Sequence
970 bp (837 high quality bases) assembled on 2006-01-10
> BS08471.3prime
ATGGTCTAGAAAGCTTCTAAAGGCCGGCTTGGAGCTTTGGCGGCGTCGTG
GGCAAATAGGCCGAGATGTCCACGCTGGCCATCAGGTTGGCTGTGTGCAG
AAGCTCGTTGACGGGCGGAGCTGTCCCGGCCTTTGCGGAGAGCGAGGATA
GAGAAGGAGCATCCGGAGCAGCAGCCTTGGCTCTGGTCAATCGGTTGTAC
AAAACCGGAGCGAAGGTGCGGAGTAGGCGGCTTCTAATGCTCAGAAGCAA
GGCATTTATCGCCCCCGAGATGACAATGATTCCTGATATAATTGAGCACA
GGCGGATGGCAAAGGTTACTAGGTGATCGCGATCGTTGCGCACAATAATT
TTCAGAGCCGACCAGTCGTACTTAAAGTAAATGCCAGGGGAGCCGTACGA
ATTGCGCTCTGAATCTAGTTTTCGCACGTTTTCGGTGACGGCATACTGAA
AAGCGTATATGGTGGTGAAAGTCTGGTGGATCTCTGTGGGCACAACCTTC
AGGAAGTATTGTACTGTGGTAGCCTCCTCGTGGATGACAATCTCGTCGCC
CTCCAATGGCTGGACAATCCTTCCCGAGTACTGTCCAAAGCTGAGCCGGT
TAATGCGATGCGTAAAGTTCGCAGGCATGCGCCGCAGTTCGATCATCCAG
TGGTCCTCGAAGAGTCCCACAACGGGCTGAGCTCCGCCCACGAGGTGGAG
CACACCGGCCACTTTGTTGATGCCCAGCGTTCCGTGCAGACGACACGCAT
CGAATTTGCTTTCTGGCTGAACGTTGTGCCGGCCATGCAGGTCGACAGAC
AGTGGCAACGCTCCTGGCGGCGGGGCAGCAGGCGCCTTCGAGGCACTCTC
CCGCGCAGGATGGTTATCCCGCATTATGTCCTTGAACAGTACATCGGCCA
CCGAGTGAAACTCCTCGCGCAGGTAGTGGTTTTGAATCTGTATGGGCTGG
AACTGCAGCCGGTCGTGTTC
BS08471.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:07:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4293-PB | 1326 | CG4293-RB | 373..1326 | 970..17 | 4745 | 99.8 | Minus |
CG4293-PA | 1326 | CG4293-RA | 373..1326 | 970..17 | 4745 | 99.8 | Minus |
CG4293-PC | 1326 | CG4293-RC | 373..1326 | 970..17 | 4745 | 99.8 | Minus |
CG4293-PD | 1326 | CG4293-RD | 373..1326 | 970..17 | 4745 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:23:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4293-RD | 1976 | CG4293-RD | 878..1831 | 970..17 | 4755 | 99.9 | Minus |
CG4293-RC | 1677 | CG4293-RC | 579..1532 | 970..17 | 4755 | 99.9 | Minus |
CG4293-RA | 1689 | CG4293-RA | 591..1544 | 970..17 | 4755 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:23:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 528545..529100 | 415..970 | 2765 | 99.8 | Plus |
X | 23542271 | X | 528086..528486 | 17..417 | 2005 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 18:23:19 has no hits.
BS08471.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:41:35 Download gff for
BS08471.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4293-PC | 373..1326 | 17..970 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:41:07 Download gff for
BS08471.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4293-PD | 373..1326 | 17..970 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:12:39 Download gff for
BS08471.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4293-RA | 591..1555 | 8..970 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:14:24 Download gff for
BS08471.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4293-RA | 591..1555 | 8..970 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:14:24 Download gff for
BS08471.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 528075..528483 | 8..414 | 99 | <- | Plus |
X | 528545..529100 | 415..970 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:12:39 Download gff for
BS08471.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 422108..422516 | 8..414 | 99 | <- | Plus |
arm_X | 422578..423133 | 415..970 | 99 | | Plus |
BS08471.5prime Sequence
962 bp (865 high quality bases) assembled on 2006-01-10
> BS08471.5prime
GAAGTTATCAGTCGACATGACGGCCACGTTGCGTTACCGCGGCGACAAAA
GCAATCTCTTGGAGTTCGCCAAGAACTTGGACGCGTTCAAAAAAGTGCCA
GAGAAGTACACGGAGACCTCGGAAATCGGAGGCACCCTATCCCTGTTGAG
CCGCCTGTTGATCGTTTACCTGGTTTACACGGAGCTGCACTACTACTGGC
ACGAGACGGACATTGTGTACCAGTTCGAGCCGGACATCGCTCTGGACGAG
CAGGTGCAGATGCACGTCGACATCACGGTGGCCATGCCCTGCGCCTCGCT
GTCCGGCGTAGATCTCATGGACGAGACGCAGCAGGACGTGTTCGCCTATG
GGACTCTGCAGCGGGAGGGTGTCTGGTGGGAGATGTCCGAACACGACCGG
CTGCAGTTCCAGGCCATACAGATTCAAAACCACTACCTGCGCGAGGAGTT
TCACTCGGTGGCCGATGTACTGTTCAAGGACATAATGCGGGATAACCATC
CTGCGCGGGAGAGTGCCTCGAAGGCGCCTGCTGCCCCGCCGCCAGGAGCG
TTGCCACTGTCTGTCGACCTGCATGGCCGGCACAACGTTCAGCCAGAAAG
CAAATTCGATGCGTGTCGTCTGCACGGAACGCTGGGCATCAACAAAGTGG
CCGGTGTGCTCCACCTCGTGGGCGGAGCTCAGCCCGTTGTGGGACTCTTC
GAGGACCACTGGATGATCGAACTGCGGCGCATGCCTGCGAACTTTACGCA
TCGCATTAACCGGCTCAGCTTTGGACAGTACTCGGGAAGGATTGTCCAGC
CATTGGAGGGCGACGAGATTGTCATCCACGAGGAGGCTACCACAGTACAA
TACTTCCTGAAGGTTGTGCCCACAGAGATCCACCAGACTTTCACCACCAT
ATACGCTTTTCAGTATGCCGTCACCGAAAACGTGCGAAAACTAGATTCAG
AGCGCAATTCGT
BS08471.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:07:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4293-PB | 1326 | CG4293-RB | 1..946 | 17..962 | 4730 | 100 | Plus |
CG4293-PA | 1326 | CG4293-RA | 1..946 | 17..962 | 4730 | 100 | Plus |
CG4293-PC | 1326 | CG4293-RC | 1..946 | 17..962 | 4730 | 100 | Plus |
CG4293-PD | 1326 | CG4293-RD | 1..946 | 17..962 | 4730 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:43:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4293-RD | 1976 | CG4293-RD | 504..1451 | 15..962 | 4740 | 100 | Plus |
CG4293-RA | 1689 | CG4293-RA | 217..1164 | 15..962 | 4740 | 100 | Plus |
CG4293-RC | 1677 | CG4293-RC | 207..1152 | 17..962 | 4730 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:43:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 528545..529351 | 944..138 | 4035 | 100 | Minus |
X | 23542271 | X | 529410..529530 | 137..17 | 605 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 23:43:37 has no hits.
BS08471.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:41:36 Download gff for
BS08471.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4293-PC | 1..946 | 17..962 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:41:08 Download gff for
BS08471.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4293-PD | 1..946 | 17..962 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:38:48 Download gff for
BS08471.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4293-RA | 217..1164 | 15..962 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 01:21:36 Download gff for
BS08471.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4293-RA | 217..1164 | 15..962 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 01:21:36 Download gff for
BS08471.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 528466..528483 | 945..962 | 100 | <- | Minus |
X | 528545..529351 | 138..944 | 100 | <- | Minus |
X | 529410..529538 | 8..137 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:38:48 Download gff for
BS08471.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 422499..422516 | 945..962 | 100 | <- | Minus |
arm_X | 422578..423384 | 138..944 | 100 | <- | Minus |
arm_X | 423443..423571 | 8..137 | 96 | | Minus |
BS08471.complete Sequence
1358 bp (1358 high quality bases) assembled on 2006-01-18
GenBank Submission: FJ636173
> BS08471.complete
GAAGTTATCAGTCGACATGACGGCCACGTTGCGTTACCGCGGCGACAAAA
GCAATCTCTTGGAGTTCGCCAAGAACTTGGACGCGTTCAAAAAAGTGCCA
GAGAAGTACACGGAGACCTCGGAAATCGGAGGCACCCTATCCCTGTTGAG
CCGCCTGTTGATCGTTTACCTGGTTTACACGGAGCTGCACTACTACTGGC
ACGAGACGGACATTGTGTACCAGTTCGAGCCGGACATCGCTCTGGACGAG
CAGGTGCAGATGCACGTCGACATCACGGTGGCCATGCCCTGCGCCTCGCT
GTCCGGCGTAGATCTCATGGACGAGACGCAGCAGGACGTGTTCGCCTATG
GGACTCTGCAGCGGGAGGGTGTCTGGTGGGAGATGTCCGAACACGACCGG
CTGCAGTTCCAGGCCATACAGATTCAAAACCACTACCTGCGCGAGGAGTT
TCACTCGGTGGCCGATGTACTGTTCAAGGACATAATGCGGGATAACCATC
CTGCGCGGGAGAGTGCCTCGAAGGCGCCTGCTGCCCCGCCGCCAGGAGCG
TTGCCACTGTCTGTCGACCTGCATGGCCGGCACAACGTTCAGCCAGAAAG
CAAATTCGATGCGTGTCGTCTGCACGGAACGCTGGGCATCAACAAAGTGG
CCGGTGTGCTCCACCTCGTGGGCGGAGCTCAGCCCGTTGTGGGACTCTTC
GAGGACCACTGGATGATCGAACTGCGGCGCATGCCTGCGAACTTTACGCA
TCGCATTAACCGGCTCAGCTTTGGACAGTACTCGGGAAGGATTGTCCAGC
CATTGGAGGGCGACGAGATTGTCATCCACGAGGAGGCTACCACAGTACAA
TACTTCCTGAAGGTTGTGCCCACAGAGATCCACCAGACTTTCACCACCAT
ATACGCTTTTCAGTATGCCGTCACCGAAAACGTGCGAAAACTAGATTCAG
AGCGCAATTCGTACGGCTCCCCTGGCATTTACTTTAAGTACGACTGGTCG
GCTCTGAAAATTATTGTGCGCAACGATCGCGATCACCTAGTAACCTTTGC
CATCCGCCTGTGCTCAATTATATCAGGAATCATTGTCATCTCGGGGGCGA
TAAATGCCTTGCTTCTGAGCATTAGAAGCCGCCTACTCCGCACCTTCGCT
CCGGTTTTGTACAACCGATTGACCAGAGCCAAGGCTGCTGCTCCGGATGC
TCCTTCTCTATCCTCGCTCTCCGCAAAGGCCGGGACAGCTCCGCCCGTCA
ACGAGCTTCTGCACACAGCCAACCTGATGGCCAGCGTGGACATCTCGGCC
TATTTGCCCACGACGCCGCCAAAGCTCCAAGCCGGCCTTTAGAAGCTTTC
TAGACCAT
BS08471.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:36:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4293-RD | 1326 | CG4293-PD | 1..1326 | 17..1342 | 6630 | 100 | Plus |
CG4293-RC | 1326 | CG4293-PC | 1..1326 | 17..1342 | 6630 | 100 | Plus |
CG4293-RA | 1326 | CG4293-PA | 1..1326 | 17..1342 | 6630 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:36:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4293-RD | 1976 | CG4293-RD | 504..1831 | 15..1342 | 6640 | 100 | Plus |
CG4293-RA | 1689 | CG4293-RA | 217..1544 | 15..1342 | 6640 | 100 | Plus |
CG4293-RC | 1677 | CG4293-RC | 207..1532 | 17..1342 | 6630 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:36:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 528545..529351 | 944..138 | 4035 | 100 | Minus |
X | 23542271 | X | 528086..528486 | 1342..942 | 2005 | 100 | Minus |
X | 23542271 | X | 529410..529530 | 137..17 | 605 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:36:40 has no hits.
BS08471.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:03:05 Download gff for
BS08471.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4293-RC | 1..1326 | 17..1342 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:41:00 Download gff for
BS08471.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4293-RD | 504..1842 | 15..1351 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:20:00 Download gff for
BS08471.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4293-RA | 219..1544 | 17..1342 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:03:05 Download gff for
BS08471.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4293-RD | 504..1842 | 15..1351 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:51:49 Download gff for
BS08471.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4293-RA | 219..1544 | 17..1342 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:51:49 Download gff for
BS08471.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 528086..528483 | 945..1342 | 100 | <- | Minus |
X | 528545..529351 | 138..944 | 100 | <- | Minus |
X | 529410..529530 | 17..137 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:20:00 Download gff for
BS08471.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 422119..422516 | 945..1342 | 100 | <- | Minus |
arm_X | 422578..423384 | 138..944 | 100 | <- | Minus |
arm_X | 423443..423563 | 17..137 | 100 | | Minus |
BS08471.pep Sequence
Translation from 16 to 1341
> BS08471.pep
MTATLRYRGDKSNLLEFAKNLDAFKKVPEKYTETSEIGGTLSLLSRLLIV
YLVYTELHYYWHETDIVYQFEPDIALDEQVQMHVDITVAMPCASLSGVDL
MDETQQDVFAYGTLQREGVWWEMSEHDRLQFQAIQIQNHYLREEFHSVAD
VLFKDIMRDNHPARESASKAPAAPPPGALPLSVDLHGRHNVQPESKFDAC
RLHGTLGINKVAGVLHLVGGAQPVVGLFEDHWMIELRRMPANFTHRINRL
SFGQYSGRIVQPLEGDEIVIHEEATTVQYFLKVVPTEIHQTFTTIYAFQY
AVTENVRKLDSERNSYGSPGIYFKYDWSALKIIVRNDRDHLVTFAIRLCS
IISGIIVISGAINALLLSIRSRLLRTFAPVLYNRLTRAKAAAPDAPSLSS
LSAKAGTAPPVNELLHTANLMASVDISAYLPTTPPKLQAGL*
BS08471.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:21:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4293-PD | 441 | CG4293-PD | 1..441 | 1..441 | 2281 | 100 | Plus |
CG4293-PC | 441 | CG4293-PC | 1..441 | 1..441 | 2281 | 100 | Plus |
CG4293-PA | 441 | CG4293-PA | 1..441 | 1..441 | 2281 | 100 | Plus |
CG4293-PB | 441 | CG4293-PB | 1..441 | 1..441 | 2281 | 100 | Plus |
CG4293-PE | 439 | CG4293-PE | 1..439 | 1..441 | 2258 | 99.5 | Plus |