Clone BS08471 Report

Search the DGRC for BS08471

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:84
Well:71
Vector:pDNR-Dual
Associated Gene/TranscriptCG4293-RA
Protein status:BS08471.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08471.3prime Sequence

970 bp (837 high quality bases) assembled on 2006-01-10

> BS08471.3prime
ATGGTCTAGAAAGCTTCTAAAGGCCGGCTTGGAGCTTTGGCGGCGTCGTG
GGCAAATAGGCCGAGATGTCCACGCTGGCCATCAGGTTGGCTGTGTGCAG
AAGCTCGTTGACGGGCGGAGCTGTCCCGGCCTTTGCGGAGAGCGAGGATA
GAGAAGGAGCATCCGGAGCAGCAGCCTTGGCTCTGGTCAATCGGTTGTAC
AAAACCGGAGCGAAGGTGCGGAGTAGGCGGCTTCTAATGCTCAGAAGCAA
GGCATTTATCGCCCCCGAGATGACAATGATTCCTGATATAATTGAGCACA
GGCGGATGGCAAAGGTTACTAGGTGATCGCGATCGTTGCGCACAATAATT
TTCAGAGCCGACCAGTCGTACTTAAAGTAAATGCCAGGGGAGCCGTACGA
ATTGCGCTCTGAATCTAGTTTTCGCACGTTTTCGGTGACGGCATACTGAA
AAGCGTATATGGTGGTGAAAGTCTGGTGGATCTCTGTGGGCACAACCTTC
AGGAAGTATTGTACTGTGGTAGCCTCCTCGTGGATGACAATCTCGTCGCC
CTCCAATGGCTGGACAATCCTTCCCGAGTACTGTCCAAAGCTGAGCCGGT
TAATGCGATGCGTAAAGTTCGCAGGCATGCGCCGCAGTTCGATCATCCAG
TGGTCCTCGAAGAGTCCCACAACGGGCTGAGCTCCGCCCACGAGGTGGAG
CACACCGGCCACTTTGTTGATGCCCAGCGTTCCGTGCAGACGACACGCAT
CGAATTTGCTTTCTGGCTGAACGTTGTGCCGGCCATGCAGGTCGACAGAC
AGTGGCAACGCTCCTGGCGGCGGGGCAGCAGGCGCCTTCGAGGCACTCTC
CCGCGCAGGATGGTTATCCCGCATTATGTCCTTGAACAGTACATCGGCCA
CCGAGTGAAACTCCTCGCGCAGGTAGTGGTTTTGAATCTGTATGGGCTGG
AACTGCAGCCGGTCGTGTTC

BS08471.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:07:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG4293-PB 1326 CG4293-RB 373..1326 970..17 4745 99.8 Minus
CG4293-PA 1326 CG4293-RA 373..1326 970..17 4745 99.8 Minus
CG4293-PC 1326 CG4293-RC 373..1326 970..17 4745 99.8 Minus
CG4293-PD 1326 CG4293-RD 373..1326 970..17 4745 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:23:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG4293-RD 1976 CG4293-RD 878..1831 970..17 4755 99.9 Minus
CG4293-RC 1677 CG4293-RC 579..1532 970..17 4755 99.9 Minus
CG4293-RA 1689 CG4293-RA 591..1544 970..17 4755 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:23:16
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 528545..529100 415..970 2765 99.8 Plus
X 23542271 X 528086..528486 17..417 2005 100 Plus
Blast to na_te.dros performed on 2015-02-12 18:23:19 has no hits.

BS08471.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:41:35 Download gff for BS08471.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4293-PC 373..1326 17..970 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:41:07 Download gff for BS08471.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4293-PD 373..1326 17..970 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:12:39 Download gff for BS08471.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4293-RA 591..1555 8..970 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:14:24 Download gff for BS08471.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4293-RA 591..1555 8..970 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:14:24 Download gff for BS08471.3prime
Subject Subject Range Query Range Percent Splice Strand
X 528075..528483 8..414 99 <- Plus
X 528545..529100 415..970 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:12:39 Download gff for BS08471.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 422108..422516 8..414 99 <- Plus
arm_X 422578..423133 415..970 99   Plus

BS08471.5prime Sequence

962 bp (865 high quality bases) assembled on 2006-01-10

> BS08471.5prime
GAAGTTATCAGTCGACATGACGGCCACGTTGCGTTACCGCGGCGACAAAA
GCAATCTCTTGGAGTTCGCCAAGAACTTGGACGCGTTCAAAAAAGTGCCA
GAGAAGTACACGGAGACCTCGGAAATCGGAGGCACCCTATCCCTGTTGAG
CCGCCTGTTGATCGTTTACCTGGTTTACACGGAGCTGCACTACTACTGGC
ACGAGACGGACATTGTGTACCAGTTCGAGCCGGACATCGCTCTGGACGAG
CAGGTGCAGATGCACGTCGACATCACGGTGGCCATGCCCTGCGCCTCGCT
GTCCGGCGTAGATCTCATGGACGAGACGCAGCAGGACGTGTTCGCCTATG
GGACTCTGCAGCGGGAGGGTGTCTGGTGGGAGATGTCCGAACACGACCGG
CTGCAGTTCCAGGCCATACAGATTCAAAACCACTACCTGCGCGAGGAGTT
TCACTCGGTGGCCGATGTACTGTTCAAGGACATAATGCGGGATAACCATC
CTGCGCGGGAGAGTGCCTCGAAGGCGCCTGCTGCCCCGCCGCCAGGAGCG
TTGCCACTGTCTGTCGACCTGCATGGCCGGCACAACGTTCAGCCAGAAAG
CAAATTCGATGCGTGTCGTCTGCACGGAACGCTGGGCATCAACAAAGTGG
CCGGTGTGCTCCACCTCGTGGGCGGAGCTCAGCCCGTTGTGGGACTCTTC
GAGGACCACTGGATGATCGAACTGCGGCGCATGCCTGCGAACTTTACGCA
TCGCATTAACCGGCTCAGCTTTGGACAGTACTCGGGAAGGATTGTCCAGC
CATTGGAGGGCGACGAGATTGTCATCCACGAGGAGGCTACCACAGTACAA
TACTTCCTGAAGGTTGTGCCCACAGAGATCCACCAGACTTTCACCACCAT
ATACGCTTTTCAGTATGCCGTCACCGAAAACGTGCGAAAACTAGATTCAG
AGCGCAATTCGT

BS08471.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:07:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG4293-PB 1326 CG4293-RB 1..946 17..962 4730 100 Plus
CG4293-PA 1326 CG4293-RA 1..946 17..962 4730 100 Plus
CG4293-PC 1326 CG4293-RC 1..946 17..962 4730 100 Plus
CG4293-PD 1326 CG4293-RD 1..946 17..962 4730 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:43:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG4293-RD 1976 CG4293-RD 504..1451 15..962 4740 100 Plus
CG4293-RA 1689 CG4293-RA 217..1164 15..962 4740 100 Plus
CG4293-RC 1677 CG4293-RC 207..1152 17..962 4730 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:43:35
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 528545..529351 944..138 4035 100 Minus
X 23542271 X 529410..529530 137..17 605 100 Minus
Blast to na_te.dros performed on 2015-02-10 23:43:37 has no hits.

BS08471.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:41:36 Download gff for BS08471.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4293-PC 1..946 17..962 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:41:08 Download gff for BS08471.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4293-PD 1..946 17..962 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:38:48 Download gff for BS08471.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4293-RA 217..1164 15..962 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 01:21:36 Download gff for BS08471.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4293-RA 217..1164 15..962 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 01:21:36 Download gff for BS08471.5prime
Subject Subject Range Query Range Percent Splice Strand
X 528466..528483 945..962 100 <- Minus
X 528545..529351 138..944 100 <- Minus
X 529410..529538 8..137 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:38:48 Download gff for BS08471.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 422499..422516 945..962 100 <- Minus
arm_X 422578..423384 138..944 100 <- Minus
arm_X 423443..423571 8..137 96   Minus

BS08471.complete Sequence

1358 bp (1358 high quality bases) assembled on 2006-01-18

GenBank Submission: FJ636173

> BS08471.complete
GAAGTTATCAGTCGACATGACGGCCACGTTGCGTTACCGCGGCGACAAAA
GCAATCTCTTGGAGTTCGCCAAGAACTTGGACGCGTTCAAAAAAGTGCCA
GAGAAGTACACGGAGACCTCGGAAATCGGAGGCACCCTATCCCTGTTGAG
CCGCCTGTTGATCGTTTACCTGGTTTACACGGAGCTGCACTACTACTGGC
ACGAGACGGACATTGTGTACCAGTTCGAGCCGGACATCGCTCTGGACGAG
CAGGTGCAGATGCACGTCGACATCACGGTGGCCATGCCCTGCGCCTCGCT
GTCCGGCGTAGATCTCATGGACGAGACGCAGCAGGACGTGTTCGCCTATG
GGACTCTGCAGCGGGAGGGTGTCTGGTGGGAGATGTCCGAACACGACCGG
CTGCAGTTCCAGGCCATACAGATTCAAAACCACTACCTGCGCGAGGAGTT
TCACTCGGTGGCCGATGTACTGTTCAAGGACATAATGCGGGATAACCATC
CTGCGCGGGAGAGTGCCTCGAAGGCGCCTGCTGCCCCGCCGCCAGGAGCG
TTGCCACTGTCTGTCGACCTGCATGGCCGGCACAACGTTCAGCCAGAAAG
CAAATTCGATGCGTGTCGTCTGCACGGAACGCTGGGCATCAACAAAGTGG
CCGGTGTGCTCCACCTCGTGGGCGGAGCTCAGCCCGTTGTGGGACTCTTC
GAGGACCACTGGATGATCGAACTGCGGCGCATGCCTGCGAACTTTACGCA
TCGCATTAACCGGCTCAGCTTTGGACAGTACTCGGGAAGGATTGTCCAGC
CATTGGAGGGCGACGAGATTGTCATCCACGAGGAGGCTACCACAGTACAA
TACTTCCTGAAGGTTGTGCCCACAGAGATCCACCAGACTTTCACCACCAT
ATACGCTTTTCAGTATGCCGTCACCGAAAACGTGCGAAAACTAGATTCAG
AGCGCAATTCGTACGGCTCCCCTGGCATTTACTTTAAGTACGACTGGTCG
GCTCTGAAAATTATTGTGCGCAACGATCGCGATCACCTAGTAACCTTTGC
CATCCGCCTGTGCTCAATTATATCAGGAATCATTGTCATCTCGGGGGCGA
TAAATGCCTTGCTTCTGAGCATTAGAAGCCGCCTACTCCGCACCTTCGCT
CCGGTTTTGTACAACCGATTGACCAGAGCCAAGGCTGCTGCTCCGGATGC
TCCTTCTCTATCCTCGCTCTCCGCAAAGGCCGGGACAGCTCCGCCCGTCA
ACGAGCTTCTGCACACAGCCAACCTGATGGCCAGCGTGGACATCTCGGCC
TATTTGCCCACGACGCCGCCAAAGCTCCAAGCCGGCCTTTAGAAGCTTTC
TAGACCAT

BS08471.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:36:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG4293-RD 1326 CG4293-PD 1..1326 17..1342 6630 100 Plus
CG4293-RC 1326 CG4293-PC 1..1326 17..1342 6630 100 Plus
CG4293-RA 1326 CG4293-PA 1..1326 17..1342 6630 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:36:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG4293-RD 1976 CG4293-RD 504..1831 15..1342 6640 100 Plus
CG4293-RA 1689 CG4293-RA 217..1544 15..1342 6640 100 Plus
CG4293-RC 1677 CG4293-RC 207..1532 17..1342 6630 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:36:39
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 528545..529351 944..138 4035 100 Minus
X 23542271 X 528086..528486 1342..942 2005 100 Minus
X 23542271 X 529410..529530 137..17 605 100 Minus
Blast to na_te.dros performed on 2014-11-27 13:36:40 has no hits.

BS08471.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:03:05 Download gff for BS08471.complete
Subject Subject Range Query Range Percent Splice Strand
CG4293-RC 1..1326 17..1342 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:41:00 Download gff for BS08471.complete
Subject Subject Range Query Range Percent Splice Strand
CG4293-RD 504..1842 15..1351 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:20:00 Download gff for BS08471.complete
Subject Subject Range Query Range Percent Splice Strand
CG4293-RA 219..1544 17..1342 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:03:05 Download gff for BS08471.complete
Subject Subject Range Query Range Percent Splice Strand
CG4293-RD 504..1842 15..1351 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:51:49 Download gff for BS08471.complete
Subject Subject Range Query Range Percent Splice Strand
CG4293-RA 219..1544 17..1342 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:51:49 Download gff for BS08471.complete
Subject Subject Range Query Range Percent Splice Strand
X 528086..528483 945..1342 100 <- Minus
X 528545..529351 138..944 100 <- Minus
X 529410..529530 17..137 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:20:00 Download gff for BS08471.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 422119..422516 945..1342 100 <- Minus
arm_X 422578..423384 138..944 100 <- Minus
arm_X 423443..423563 17..137 100   Minus

BS08471.pep Sequence

Translation from 16 to 1341

> BS08471.pep
MTATLRYRGDKSNLLEFAKNLDAFKKVPEKYTETSEIGGTLSLLSRLLIV
YLVYTELHYYWHETDIVYQFEPDIALDEQVQMHVDITVAMPCASLSGVDL
MDETQQDVFAYGTLQREGVWWEMSEHDRLQFQAIQIQNHYLREEFHSVAD
VLFKDIMRDNHPARESASKAPAAPPPGALPLSVDLHGRHNVQPESKFDAC
RLHGTLGINKVAGVLHLVGGAQPVVGLFEDHWMIELRRMPANFTHRINRL
SFGQYSGRIVQPLEGDEIVIHEEATTVQYFLKVVPTEIHQTFTTIYAFQY
AVTENVRKLDSERNSYGSPGIYFKYDWSALKIIVRNDRDHLVTFAIRLCS
IISGIIVISGAINALLLSIRSRLLRTFAPVLYNRLTRAKAAAPDAPSLSS
LSAKAGTAPPVNELLHTANLMASVDISAYLPTTPPKLQAGL*

BS08471.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:21:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG4293-PD 441 CG4293-PD 1..441 1..441 2281 100 Plus
CG4293-PC 441 CG4293-PC 1..441 1..441 2281 100 Plus
CG4293-PA 441 CG4293-PA 1..441 1..441 2281 100 Plus
CG4293-PB 441 CG4293-PB 1..441 1..441 2281 100 Plus
CG4293-PE 439 CG4293-PE 1..439 1..441 2258 99.5 Plus