Clone Sequence Records
BS08474.3prime Sequence
886 bp (803 high quality bases) assembled on 2006-01-10
> BS08474.3prime
ATGGTCTAGAAAGCTTTTAAACATATCTGGTAATCTGGGTATGGAACTCC
GATAGGCAGATCTGCAGCTGGCTGAACGAAGGTCGCTCAGCTGGCATGGA
GGCCCAACAATAGGCCATAATGGTGAAGAGCTCATCGGGGCAGTTGAATG
GCTGGGCCAATCTGTATCCATCCTTGAGATAGTGCTCCATCTCATAGGGA
TCGATCTCGGCGTAGGGCAGTTTACCCAGAGTGCACATTTCCCACATGAG
AACGCCGAAGGACCAAACATCACTGCCCTCGTTGTAATGGGACTTCTGCA
GGGCCTCCAAGGACAGCCACTTGATGGGTCGGTACTCGCCATCGCCCAGA
GAATTGTAGTCACCCGGGAAGAGATCGCGACTCAAAGCACTATCAGTGAG
CTTAACTCGAAGCTGATCATCAATAACACAGTTTCTGGCCGCAATGTCCT
TGTGGATGACGCCGTGGTTGTGCAGATGCTCCATGGCCATGGCCAGTTGT
GAGCCCATAAGCACCGTCTGAATGGTGGTGACGCTCCTGGCGTACGACGG
ATCCTGCAGGAAGCTCTTCAGGTTCCTCACACTTCCGGTGGCGGCATAGA
GCACAAAGGGCGTGGCATAGTCCTCGATGGAGATGCCCAGAACGGAGAGG
ACATTCGGATGCGAGGCCTCGTACAGCATCATGGACTCCTGGAGCAGCAG
ATTCACTTGCAGCTGGCTGGCGTGCTGAGCCACAGTCTTGACCAATACCT
CCTGGCAGTCGTTATAAGTGCCGCGATAGATTCGCCCAAAGTTTCCCTCC
TGGACGAGGCAGGAGAGCCGGACGCGGCACTTTTGGACTGTCAGCTCTTG
NAGACGGCGGTTGAACTCCTCANGCTCATGCTCATA
BS08474.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:07:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17348-PA | 1833 | drl-RA | 964..1833 | 886..17 | 4312 | 99.7 | Minus |
CG17559-PA | 1755 | dnt-RA | 1613..1671 | 159..101 | 170 | 91.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:51:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
drl-RB | 3104 | CG17348-RB | 1351..2220 | 886..17 | 4328 | 99.8 | Minus |
drl-RA | 3104 | CG17348-RA | 1351..2220 | 886..17 | 4328 | 99.8 | Minus |
dnt-RB | 2639 | CG17559-RB | 1358..2059 | 802..101 | 700 | 73.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:51:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19206578..19207038 | 886..426 | 2283 | 99.6 | Minus |
2L | 23513712 | 2L | 19207205..19207501 | 425..129 | 1485 | 100 | Minus |
2L | 23513712 | 2L | 19207626..19207737 | 128..17 | 560 | 100 | Minus |
2L | 23513712 | 2L | 19339355..19339651 | 129..425 | 390 | 75.4 | Plus |
Blast to na_te.dros performed on 2015-02-11 23:51:28 has no hits.
BS08474.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:41:39 Download gff for
BS08474.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
drl-PA | 965..1833 | 17..885 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:41:13 Download gff for
BS08474.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17348-PA | 965..1833 | 17..885 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:38:05 Download gff for
BS08474.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
drl-RA | 1352..2225 | 13..885 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:05:15 Download gff for
BS08474.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
drl-RA | 1352..2225 | 13..885 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:05:15 Download gff for
BS08474.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19206579..19207038 | 426..885 | 99 | -> | Minus |
2L | 19207205..19207501 | 129..425 | 100 | -> | Minus |
2L | 19207626..19207742 | 13..128 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:38:05 Download gff for
BS08474.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19206579..19207038 | 426..885 | 99 | -> | Minus |
arm_2L | 19207205..19207501 | 129..425 | 100 | -> | Minus |
arm_2L | 19207626..19207742 | 13..128 | 98 | | Minus |
BS08474.5prime Sequence
899 bp (818 high quality bases) assembled on 2006-01-10
> BS08474.5prime
GAAGTTATCAGTCGACATGGCCCCCAACTTGCTAACAATCGGATTACTTT
TGACCCTGATCGCCAGCGGTCAGGCCCATCTCAATATTTTCCTCAACTTG
CACGAGGTGCTGCGCCTAATCGGAGTCTCGGCGGAGCTTTACTACGTGCG
GGAGGGCGCCATTAACGACTACGCCTTGAACTTCGCCGTGCCCGTGCCGG
CGAACATCAGTGACGTGACCTTTACGTGGCAATCCCTGGTGGACCATCCG
CTGCCCTACAGCATCAATATCGCCACATCGGACACGGAGGTGTTGCCGCG
ACCCATTCTGAACATATCCCGGATCGGGGATGTGCCCGTGGAGCCACAGA
CATGGGGCATTGCGCTCAAGTGCTCGGGCACCAGGAATGCCGAGGTTACG
GTCACCATAAATGTGGAGGTCATTCTGGATCGGGCTACCAATAACAATAC
GAATCTGATCTTCAAAAGGAAGAAGATCTGTTTGAGGGAGGAACAGGACA
GTGCGCACGAGGAGTACGACGACGATGACTTGGACTTGCTGCAAACGGCG
CGTAAGGGACATGGCGGAGATATTCACTATGTGGATCGAAACGATGAGCA
TGTGGTCGCCAATGGACACCAGGCGCCGGAGAAGCAACGTCCGGTTGTCA
CAGAGTCGCCAGTGGGCCGTGGAAACTCCGGTGGATCGAAGCGCGACTTT
GACCCGATGCTGAGGGAGAACCTGGTGCCACCGGCCAGTGGCCTGGTTAC
CCTAATTGTGGGTGGCATTCTGGCTCTGGTCCTTGTTTCCACCCTCATCC
TGATAGCCTACTGTGCCAAGGGCCCGTCCAAGCGACATCCTTCGAACGGA
GTGCATCTCATCAAAACCTCTAGCTTCCAGAGACTGCCCACCATATCGT
BS08474.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:07:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17348-PA | 1833 | drl-RA | 1..883 | 17..899 | 4415 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:47:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
drl-RB | 3104 | CG17348-RB | 388..1270 | 17..899 | 4415 | 100 | Plus |
drl-RA | 3104 | CG17348-RA | 388..1270 | 17..899 | 4415 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 09:47:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19205720..19206497 | 122..899 | 3890 | 100 | Plus |
2L | 23513712 | 2L | 19190729..19190835 | 17..123 | 535 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 09:47:38 has no hits.
BS08474.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:41:40 Download gff for
BS08474.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
drl-PA | 1..883 | 17..899 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:41:15 Download gff for
BS08474.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17348-PA | 1..883 | 17..899 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:25:06 Download gff for
BS08474.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
drl-RA | 388..1270 | 17..899 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:33:53 Download gff for
BS08474.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
drl-RA | 388..1270 | 17..899 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:33:53 Download gff for
BS08474.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19190729..19190834 | 17..122 | 100 | -> | Plus |
2L | 19205721..19206497 | 123..899 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:25:06 Download gff for
BS08474.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19190729..19190834 | 17..122 | 100 | -> | Plus |
arm_2L | 19205721..19206497 | 123..899 | 100 | | Plus |
BS08474.complete Sequence
1865 bp assembled on 2008-08-14
GenBank Submission: FJ636174
> BS08474.complete
GAAGTTATCAGTCGACATGGCCCCCAACTTGCTAACAATCGGATTACTTT
TGACCCTGATCGCCAGCGGTCAGGCCCATCTCAATATTTTCCTCAACTTG
CACGAGGTGCTGCGCCTAATCGGAGTCTCGGCGGAGCTTTACTACGTGCG
GGAGGGCGCCATTAACGACTACGCCTTGAACTTCGCCGTGCCCGTGCCGG
CGAACATCAGTGACGTGACCTTTACGTGGCAATCCCTGGTGGACCATCCG
CTGCCCTACAGCATCAATATCGCCACATCGGACACGGAGGTGTTGCCGCG
ACCCATTCTGAACATATCCCGGATCGGGGATGTGCCCGTGGAGCCACAGA
CATGGGGCATTGCGCTCAAGTGCTCGGGCACCAGGAATGCCGAGGTTACG
GTCACCATAAATGTGGAGGTCATTCTGGATCGGGCTACCAATAACAATAC
GAATCTGATCTTCAAAAGGAAGAAGATCTGTTTGAGGGAGGAACAGGACA
GTGCGCACGAGGAGTACGACGACGATGACTTGGACTTGCTGCAAACGGCG
CGTAAGGGACATGGCGGAGATATTCACTATGTGGATCGAAACGATGAGCA
TGTGGTCGCCAATGGACACCAGGCGCCGGAGAAGCAACGTCCGGTTGTCA
CAGAGTCGCCAGTGGGCCGTGGAAACTCCGGTGGATCGAAGCGCGACTTT
GACCCGATGCTGAGGGAGAACCTGGTGCCACCGGCCAGTGGCCTGGTTAC
CCTAATTGTGGGTGGCATTCTGGCTCTGGTCCTTGTTTCCACCCTCATCC
TGATAGCCTACTGTGCCAAGGGCCCGTCCAAGCGACATCCTTCGAACGGA
GTGCATCTCATCAAAACCTCTAGCTTCCAGAGACTGCCCACCATATCGTC
GACGGCCCACAACTCGATCTACGTCTGCCCATCGACCATCACTCCTACAT
ATGCCACGCTGACGCGGCCCTTTCGCGAATATGAGCATGAGCCTGAGGAG
TTCAACCGCCGTCTCCAAGAGCTGACAGTCCAAAAGTGCCGCGTCCGGCT
CTCCTGCCTCGTCCAGGAGGGAAACTTTGGGCGAATCTATCGCGGCACTT
ATAACGACTGCCAGGAGGTATTGGTCAAGACTGTGGCTCAGCACGCCAGC
CAGCTGCAAGTGAATCTGCTGCTCCAGGAGTCCATGATGCTGTACGAGGC
CTCGCATCCGAATGTCCTCTCCGTTCTGGGCATCTCCATCGAGGACTATG
CCACGCCCTTTGTGCTCTATGCCGCCACCGGAAGTGTGAGGAACCTGAAG
AGCTTCCTGCAGGATCCGTCGTACGCCAGGAGCGTCACCACCATTCAGAC
GGTGCTTATGGGCTCACAACTGGCCATGGCCATGGAGCATCTGCACAACC
ACGGCGTCATCCACAAGGACATTGCGGCCAGAAACTGTGTTATTGATGAT
CAGCTTCGAGTTAAGCTCACTGATAGTGCTTTGAGTCGCGATCTCTTCCC
GGGTGACTACAATTCTCTGGGCGATGGCGAGTACCGACCCATCAAGTGGC
TGTCCTTGGAGGCCCTGCAGAAGTCCCATTACAACGAGGGCAGTGATGTT
TGGTCCTTCGGCGTTCTCATGTGGGAAATGTGCACTCTGGGTAAACTGCC
CTACGCCGAGATCGATCCCTATGAGATGGAGCACTATCTCAAGGATGGAT
ACAGATTGGCCCAGCCATTCAACTGCCCCGATGAGCTCTTCACCATTATG
GCCTATTGTTGGGCCTCCATGCCAGCTGAGCGACCTTCGTTCAGCCAGCT
GCAGATCTGCCTATCGGAGTTCCATACCCAGATTACCAGATATGTTTAAA
AGCTTTCTAGACCAT
BS08474.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:41:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
drl-RB | 1938 | CG17348-PB | 1..1833 | 17..1849 | 9165 | 100 | Plus |
drl-RA | 1833 | CG17348-PA | 1..1833 | 17..1849 | 9165 | 100 | Plus |
dnt-RB | 1755 | CG17559-PB | 970..1671 | 1064..1765 | 675 | 73.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:41:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
drl-RB | 3104 | CG17348-RB | 388..2220 | 17..1849 | 9165 | 100 | Plus |
drl-RA | 3104 | CG17348-RA | 388..2220 | 17..1849 | 9165 | 100 | Plus |
dnt-RB | 2639 | CG17559-RB | 1358..2059 | 1064..1765 | 675 | 73.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:41:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19205720..19207038 | 122..1440 | 6595 | 100 | Plus |
2L | 23513712 | 2L | 19207205..19207501 | 1441..1737 | 1485 | 100 | Plus |
2L | 23513712 | 2L | 19207626..19207737 | 1738..1849 | 560 | 100 | Plus |
2L | 23513712 | 2L | 19190729..19190835 | 17..123 | 535 | 100 | Plus |
2L | 23513712 | 2L | 19339355..19339651 | 1737..1441 | 390 | 75.4 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:41:38 has no hits.
BS08474.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:43:26 Download gff for
BS08474.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
drl-RA | 384..2221 | 17..1853 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:31:45 Download gff for
BS08474.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
drl-RA | 388..2218 | 17..1847 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:07:15 Download gff for
BS08474.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
drl-RA | 384..2214 | 17..1847 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:50:45 Download gff for
BS08474.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
drl-RA | 388..2218 | 17..1847 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:50:45 Download gff for
BS08474.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19190729..19190834 | 17..122 | 100 | -> | Plus |
2L | 19205721..19207038 | 123..1440 | 100 | -> | Plus |
2L | 19207205..19207501 | 1441..1737 | 100 | -> | Plus |
2L | 19207626..19207735 | 1738..1847 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:31:45 Download gff for
BS08474.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19190729..19190834 | 17..122 | 100 | -> | Plus |
arm_2L | 19205721..19207038 | 123..1440 | 100 | -> | Plus |
arm_2L | 19207205..19207501 | 1441..1737 | 100 | -> | Plus |
arm_2L | 19207626..19207735 | 1738..1847 | 100 | | Plus |
BS08474.pep Sequence
Translation from 16 to 1848
> BS08474.pep
MAPNLLTIGLLLTLIASGQAHLNIFLNLHEVLRLIGVSAELYYVREGAIN
DYALNFAVPVPANISDVTFTWQSLVDHPLPYSINIATSDTEVLPRPILNI
SRIGDVPVEPQTWGIALKCSGTRNAEVTVTINVEVILDRATNNNTNLIFK
RKKICLREEQDSAHEEYDDDDLDLLQTARKGHGGDIHYVDRNDEHVVANG
HQAPEKQRPVVTESPVGRGNSGGSKRDFDPMLRENLVPPASGLVTLIVGG
ILALVLVSTLILIAYCAKGPSKRHPSNGVHLIKTSSFQRLPTISSTAHNS
IYVCPSTITPTYATLTRPFREYEHEPEEFNRRLQELTVQKCRVRLSCLVQ
EGNFGRIYRGTYNDCQEVLVKTVAQHASQLQVNLLLQESMMLYEASHPNV
LSVLGISIEDYATPFVLYAATGSVRNLKSFLQDPSYARSVTTIQTVLMGS
QLAMAMEHLHNHGVIHKDIAARNCVIDDQLRVKLTDSALSRDLFPGDYNS
LGDGEYRPIKWLSLEALQKSHYNEGSDVWSFGVLMWEMCTLGKLPYAEID
PYEMEHYLKDGYRLAQPFNCPDELFTIMAYCWASMPAERPSFSQLQICLS
EFHTQITRYV*
BS08474.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:17:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
drl-PB | 645 | CG17348-PB | 1..610 | 1..610 | 3189 | 100 | Plus |
drl-PA | 610 | CG17348-PA | 1..610 | 1..610 | 3189 | 100 | Plus |
dnt-PB | 584 | CG17559-PB | 195..584 | 229..610 | 1336 | 65.1 | Plus |
dnt-PA | 584 | CG17559-PA | 195..584 | 229..610 | 1336 | 65.1 | Plus |
Drl-2-PC | 648 | CG3915-PC | 352..648 | 310..610 | 615 | 43.9 | Plus |
dnt-PB | 584 | CG17559-PB | 45..201 | 20..177 | 513 | 62.3 | Plus |
dnt-PA | 584 | CG17559-PA | 45..201 | 20..177 | 513 | 62.3 | Plus |