Clone BS08474 Report

Search the DGRC for BS08474

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:84
Well:74
Vector:pDNR-Dual
Associated Gene/Transcriptdrl-RA
Protein status:BS08474.pep: full length peptide match
Sequenced Size:1865

Clone Sequence Records

BS08474.3prime Sequence

886 bp (803 high quality bases) assembled on 2006-01-10

> BS08474.3prime
ATGGTCTAGAAAGCTTTTAAACATATCTGGTAATCTGGGTATGGAACTCC
GATAGGCAGATCTGCAGCTGGCTGAACGAAGGTCGCTCAGCTGGCATGGA
GGCCCAACAATAGGCCATAATGGTGAAGAGCTCATCGGGGCAGTTGAATG
GCTGGGCCAATCTGTATCCATCCTTGAGATAGTGCTCCATCTCATAGGGA
TCGATCTCGGCGTAGGGCAGTTTACCCAGAGTGCACATTTCCCACATGAG
AACGCCGAAGGACCAAACATCACTGCCCTCGTTGTAATGGGACTTCTGCA
GGGCCTCCAAGGACAGCCACTTGATGGGTCGGTACTCGCCATCGCCCAGA
GAATTGTAGTCACCCGGGAAGAGATCGCGACTCAAAGCACTATCAGTGAG
CTTAACTCGAAGCTGATCATCAATAACACAGTTTCTGGCCGCAATGTCCT
TGTGGATGACGCCGTGGTTGTGCAGATGCTCCATGGCCATGGCCAGTTGT
GAGCCCATAAGCACCGTCTGAATGGTGGTGACGCTCCTGGCGTACGACGG
ATCCTGCAGGAAGCTCTTCAGGTTCCTCACACTTCCGGTGGCGGCATAGA
GCACAAAGGGCGTGGCATAGTCCTCGATGGAGATGCCCAGAACGGAGAGG
ACATTCGGATGCGAGGCCTCGTACAGCATCATGGACTCCTGGAGCAGCAG
ATTCACTTGCAGCTGGCTGGCGTGCTGAGCCACAGTCTTGACCAATACCT
CCTGGCAGTCGTTATAAGTGCCGCGATAGATTCGCCCAAAGTTTCCCTCC
TGGACGAGGCAGGAGAGCCGGACGCGGCACTTTTGGACTGTCAGCTCTTG
NAGACGGCGGTTGAACTCCTCANGCTCATGCTCATA

BS08474.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:07:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG17348-PA 1833 drl-RA 964..1833 886..17 4312 99.7 Minus
CG17559-PA 1755 dnt-RA 1613..1671 159..101 170 91.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:51:31
Subject Length Description Subject Range Query Range Score Percent Strand
drl-RB 3104 CG17348-RB 1351..2220 886..17 4328 99.8 Minus
drl-RA 3104 CG17348-RA 1351..2220 886..17 4328 99.8 Minus
dnt-RB 2639 CG17559-RB 1358..2059 802..101 700 73.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:51:23
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19206578..19207038 886..426 2283 99.6 Minus
2L 23513712 2L 19207205..19207501 425..129 1485 100 Minus
2L 23513712 2L 19207626..19207737 128..17 560 100 Minus
2L 23513712 2L 19339355..19339651 129..425 390 75.4 Plus
Blast to na_te.dros performed on 2015-02-11 23:51:28 has no hits.

BS08474.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:41:39 Download gff for BS08474.3prime
Subject Subject Range Query Range Percent Splice Strand
drl-PA 965..1833 17..885 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:41:13 Download gff for BS08474.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17348-PA 965..1833 17..885 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:38:05 Download gff for BS08474.3prime
Subject Subject Range Query Range Percent Splice Strand
drl-RA 1352..2225 13..885 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:05:15 Download gff for BS08474.3prime
Subject Subject Range Query Range Percent Splice Strand
drl-RA 1352..2225 13..885 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:05:15 Download gff for BS08474.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 19206579..19207038 426..885 99 -> Minus
2L 19207205..19207501 129..425 100 -> Minus
2L 19207626..19207742 13..128 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:38:05 Download gff for BS08474.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19206579..19207038 426..885 99 -> Minus
arm_2L 19207205..19207501 129..425 100 -> Minus
arm_2L 19207626..19207742 13..128 98   Minus

BS08474.5prime Sequence

899 bp (818 high quality bases) assembled on 2006-01-10

> BS08474.5prime
GAAGTTATCAGTCGACATGGCCCCCAACTTGCTAACAATCGGATTACTTT
TGACCCTGATCGCCAGCGGTCAGGCCCATCTCAATATTTTCCTCAACTTG
CACGAGGTGCTGCGCCTAATCGGAGTCTCGGCGGAGCTTTACTACGTGCG
GGAGGGCGCCATTAACGACTACGCCTTGAACTTCGCCGTGCCCGTGCCGG
CGAACATCAGTGACGTGACCTTTACGTGGCAATCCCTGGTGGACCATCCG
CTGCCCTACAGCATCAATATCGCCACATCGGACACGGAGGTGTTGCCGCG
ACCCATTCTGAACATATCCCGGATCGGGGATGTGCCCGTGGAGCCACAGA
CATGGGGCATTGCGCTCAAGTGCTCGGGCACCAGGAATGCCGAGGTTACG
GTCACCATAAATGTGGAGGTCATTCTGGATCGGGCTACCAATAACAATAC
GAATCTGATCTTCAAAAGGAAGAAGATCTGTTTGAGGGAGGAACAGGACA
GTGCGCACGAGGAGTACGACGACGATGACTTGGACTTGCTGCAAACGGCG
CGTAAGGGACATGGCGGAGATATTCACTATGTGGATCGAAACGATGAGCA
TGTGGTCGCCAATGGACACCAGGCGCCGGAGAAGCAACGTCCGGTTGTCA
CAGAGTCGCCAGTGGGCCGTGGAAACTCCGGTGGATCGAAGCGCGACTTT
GACCCGATGCTGAGGGAGAACCTGGTGCCACCGGCCAGTGGCCTGGTTAC
CCTAATTGTGGGTGGCATTCTGGCTCTGGTCCTTGTTTCCACCCTCATCC
TGATAGCCTACTGTGCCAAGGGCCCGTCCAAGCGACATCCTTCGAACGGA
GTGCATCTCATCAAAACCTCTAGCTTCCAGAGACTGCCCACCATATCGT

BS08474.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:07:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG17348-PA 1833 drl-RA 1..883 17..899 4415 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:47:42
Subject Length Description Subject Range Query Range Score Percent Strand
drl-RB 3104 CG17348-RB 388..1270 17..899 4415 100 Plus
drl-RA 3104 CG17348-RA 388..1270 17..899 4415 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 09:47:34
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19205720..19206497 122..899 3890 100 Plus
2L 23513712 2L 19190729..19190835 17..123 535 100 Plus
Blast to na_te.dros performed on 2015-02-02 09:47:38 has no hits.

BS08474.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:41:40 Download gff for BS08474.5prime
Subject Subject Range Query Range Percent Splice Strand
drl-PA 1..883 17..899 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:41:15 Download gff for BS08474.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17348-PA 1..883 17..899 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:25:06 Download gff for BS08474.5prime
Subject Subject Range Query Range Percent Splice Strand
drl-RA 388..1270 17..899 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:33:53 Download gff for BS08474.5prime
Subject Subject Range Query Range Percent Splice Strand
drl-RA 388..1270 17..899 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:33:53 Download gff for BS08474.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 19190729..19190834 17..122 100 -> Plus
2L 19205721..19206497 123..899 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:25:06 Download gff for BS08474.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19190729..19190834 17..122 100 -> Plus
arm_2L 19205721..19206497 123..899 100   Plus

BS08474.complete Sequence

1865 bp assembled on 2008-08-14

GenBank Submission: FJ636174

> BS08474.complete
GAAGTTATCAGTCGACATGGCCCCCAACTTGCTAACAATCGGATTACTTT
TGACCCTGATCGCCAGCGGTCAGGCCCATCTCAATATTTTCCTCAACTTG
CACGAGGTGCTGCGCCTAATCGGAGTCTCGGCGGAGCTTTACTACGTGCG
GGAGGGCGCCATTAACGACTACGCCTTGAACTTCGCCGTGCCCGTGCCGG
CGAACATCAGTGACGTGACCTTTACGTGGCAATCCCTGGTGGACCATCCG
CTGCCCTACAGCATCAATATCGCCACATCGGACACGGAGGTGTTGCCGCG
ACCCATTCTGAACATATCCCGGATCGGGGATGTGCCCGTGGAGCCACAGA
CATGGGGCATTGCGCTCAAGTGCTCGGGCACCAGGAATGCCGAGGTTACG
GTCACCATAAATGTGGAGGTCATTCTGGATCGGGCTACCAATAACAATAC
GAATCTGATCTTCAAAAGGAAGAAGATCTGTTTGAGGGAGGAACAGGACA
GTGCGCACGAGGAGTACGACGACGATGACTTGGACTTGCTGCAAACGGCG
CGTAAGGGACATGGCGGAGATATTCACTATGTGGATCGAAACGATGAGCA
TGTGGTCGCCAATGGACACCAGGCGCCGGAGAAGCAACGTCCGGTTGTCA
CAGAGTCGCCAGTGGGCCGTGGAAACTCCGGTGGATCGAAGCGCGACTTT
GACCCGATGCTGAGGGAGAACCTGGTGCCACCGGCCAGTGGCCTGGTTAC
CCTAATTGTGGGTGGCATTCTGGCTCTGGTCCTTGTTTCCACCCTCATCC
TGATAGCCTACTGTGCCAAGGGCCCGTCCAAGCGACATCCTTCGAACGGA
GTGCATCTCATCAAAACCTCTAGCTTCCAGAGACTGCCCACCATATCGTC
GACGGCCCACAACTCGATCTACGTCTGCCCATCGACCATCACTCCTACAT
ATGCCACGCTGACGCGGCCCTTTCGCGAATATGAGCATGAGCCTGAGGAG
TTCAACCGCCGTCTCCAAGAGCTGACAGTCCAAAAGTGCCGCGTCCGGCT
CTCCTGCCTCGTCCAGGAGGGAAACTTTGGGCGAATCTATCGCGGCACTT
ATAACGACTGCCAGGAGGTATTGGTCAAGACTGTGGCTCAGCACGCCAGC
CAGCTGCAAGTGAATCTGCTGCTCCAGGAGTCCATGATGCTGTACGAGGC
CTCGCATCCGAATGTCCTCTCCGTTCTGGGCATCTCCATCGAGGACTATG
CCACGCCCTTTGTGCTCTATGCCGCCACCGGAAGTGTGAGGAACCTGAAG
AGCTTCCTGCAGGATCCGTCGTACGCCAGGAGCGTCACCACCATTCAGAC
GGTGCTTATGGGCTCACAACTGGCCATGGCCATGGAGCATCTGCACAACC
ACGGCGTCATCCACAAGGACATTGCGGCCAGAAACTGTGTTATTGATGAT
CAGCTTCGAGTTAAGCTCACTGATAGTGCTTTGAGTCGCGATCTCTTCCC
GGGTGACTACAATTCTCTGGGCGATGGCGAGTACCGACCCATCAAGTGGC
TGTCCTTGGAGGCCCTGCAGAAGTCCCATTACAACGAGGGCAGTGATGTT
TGGTCCTTCGGCGTTCTCATGTGGGAAATGTGCACTCTGGGTAAACTGCC
CTACGCCGAGATCGATCCCTATGAGATGGAGCACTATCTCAAGGATGGAT
ACAGATTGGCCCAGCCATTCAACTGCCCCGATGAGCTCTTCACCATTATG
GCCTATTGTTGGGCCTCCATGCCAGCTGAGCGACCTTCGTTCAGCCAGCT
GCAGATCTGCCTATCGGAGTTCCATACCCAGATTACCAGATATGTTTAAA
AGCTTTCTAGACCAT

BS08474.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:41:39
Subject Length Description Subject Range Query Range Score Percent Strand
drl-RB 1938 CG17348-PB 1..1833 17..1849 9165 100 Plus
drl-RA 1833 CG17348-PA 1..1833 17..1849 9165 100 Plus
dnt-RB 1755 CG17559-PB 970..1671 1064..1765 675 73.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:41:41
Subject Length Description Subject Range Query Range Score Percent Strand
drl-RB 3104 CG17348-RB 388..2220 17..1849 9165 100 Plus
drl-RA 3104 CG17348-RA 388..2220 17..1849 9165 100 Plus
dnt-RB 2639 CG17559-RB 1358..2059 1064..1765 675 73.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:41:37
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19205720..19207038 122..1440 6595 100 Plus
2L 23513712 2L 19207205..19207501 1441..1737 1485 100 Plus
2L 23513712 2L 19207626..19207737 1738..1849 560 100 Plus
2L 23513712 2L 19190729..19190835 17..123 535 100 Plus
2L 23513712 2L 19339355..19339651 1737..1441 390 75.4 Minus
Blast to na_te.dros performed on 2014-11-27 14:41:38 has no hits.

BS08474.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:43:26 Download gff for BS08474.complete
Subject Subject Range Query Range Percent Splice Strand
drl-RA 384..2221 17..1853 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:31:45 Download gff for BS08474.complete
Subject Subject Range Query Range Percent Splice Strand
drl-RA 388..2218 17..1847 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:07:15 Download gff for BS08474.complete
Subject Subject Range Query Range Percent Splice Strand
drl-RA 384..2214 17..1847 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:50:45 Download gff for BS08474.complete
Subject Subject Range Query Range Percent Splice Strand
drl-RA 388..2218 17..1847 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:50:45 Download gff for BS08474.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19190729..19190834 17..122 100 -> Plus
2L 19205721..19207038 123..1440 100 -> Plus
2L 19207205..19207501 1441..1737 100 -> Plus
2L 19207626..19207735 1738..1847 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:31:45 Download gff for BS08474.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19190729..19190834 17..122 100 -> Plus
arm_2L 19205721..19207038 123..1440 100 -> Plus
arm_2L 19207205..19207501 1441..1737 100 -> Plus
arm_2L 19207626..19207735 1738..1847 100   Plus

BS08474.pep Sequence

Translation from 16 to 1848

> BS08474.pep
MAPNLLTIGLLLTLIASGQAHLNIFLNLHEVLRLIGVSAELYYVREGAIN
DYALNFAVPVPANISDVTFTWQSLVDHPLPYSINIATSDTEVLPRPILNI
SRIGDVPVEPQTWGIALKCSGTRNAEVTVTINVEVILDRATNNNTNLIFK
RKKICLREEQDSAHEEYDDDDLDLLQTARKGHGGDIHYVDRNDEHVVANG
HQAPEKQRPVVTESPVGRGNSGGSKRDFDPMLRENLVPPASGLVTLIVGG
ILALVLVSTLILIAYCAKGPSKRHPSNGVHLIKTSSFQRLPTISSTAHNS
IYVCPSTITPTYATLTRPFREYEHEPEEFNRRLQELTVQKCRVRLSCLVQ
EGNFGRIYRGTYNDCQEVLVKTVAQHASQLQVNLLLQESMMLYEASHPNV
LSVLGISIEDYATPFVLYAATGSVRNLKSFLQDPSYARSVTTIQTVLMGS
QLAMAMEHLHNHGVIHKDIAARNCVIDDQLRVKLTDSALSRDLFPGDYNS
LGDGEYRPIKWLSLEALQKSHYNEGSDVWSFGVLMWEMCTLGKLPYAEID
PYEMEHYLKDGYRLAQPFNCPDELFTIMAYCWASMPAERPSFSQLQICLS
EFHTQITRYV*

BS08474.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:17:42
Subject Length Description Subject Range Query Range Score Percent Strand
drl-PB 645 CG17348-PB 1..610 1..610 3189 100 Plus
drl-PA 610 CG17348-PA 1..610 1..610 3189 100 Plus
dnt-PB 584 CG17559-PB 195..584 229..610 1336 65.1 Plus
dnt-PA 584 CG17559-PA 195..584 229..610 1336 65.1 Plus
Drl-2-PC 648 CG3915-PC 352..648 310..610 615 43.9 Plus
dnt-PB 584 CG17559-PB 45..201 20..177 513 62.3 Plus
dnt-PA 584 CG17559-PA 45..201 20..177 513 62.3 Plus