Clone Sequence Records
BS08478.3prime Sequence
883 bp (844 high quality bases) assembled on 2006-01-10
> BS08478.3prime
ATGGTCTAGAAAGCTTTCAGTAGGCCTGCGCCTCTTTGTAGTCGCTCTGA
TCAGATGTATAGAAGTCTTCCAGTTTCCATTGTAGCGTCTCAAACGTGGG
TCTGCGCATGGGGTCCTTGTGCCAACATTCCAGCATAATCTCATACAGGC
GCGGCTCGCAGTTGGGAGGTTGCGGCATTCGATAGCCGTGCTCCACTTGC
GTTAGCACCTCAGCGTTGGTCATGCCTGGATATGGTATGCGTCCGTAGGT
GACCAGTTCTGTGAGAAGAATGCCAAAGCTCCAAACATCCGATTTTATTG
AGAATTTGCTGTAGTTAGCAGCCTCTGGAGCGGTCCATTTTATGGGAAAT
CTGGCGCCTACCCGCGCCTCGTATTCGTCCTCCTTGATGAGCCTAGCTAA
ACCAAAGTCGGCGATTTTGACGATGTTTCCATCGCCTACCAGTACATTGC
GCGCCGCTAAATCCCTATGAATATAATTCTGGGACTCCAAGTAAGCCATG
CCAGCAGCTATTTGCGCTGCCATATCAATCAGAGTTTGCATTTTAAGGCT
ACGACCCTTGCCTGCAATGGCTTGGAGATATTCCAACAGTGAACCGTGCT
TCATTAACTCTGTGATAATATAGATAGGCTCCTCAACAGTGCAGACAGCG
TACAACTGTATAAGCTTGGTGTGGCGCAGTTTCTTCATGATCTGGGCTTC
CGCTAAGAAATCCTTGGGGTCCATTGTACCAGATTTCAGAGTTTTAATTG
CCACAGGTGTTGTGTTGTTCCACAATCCCTCCCAGACATCGCCAAACTGT
CCGGAGCCCAGTTTGCGCACGAATTTCAAAGACGTTCTGTCGATCTCCCA
CTGATCGCGAGTGCGGTGCGAAAGCCCTCAGTT
BS08478.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:07:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7873-PB | 1554 | Src42A-RB | 694..1554 | 877..17 | 4305 | 100 | Minus |
CG7873-PA | 1554 | Src42A-RA | 694..1554 | 877..17 | 4305 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:32:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Src42A-RB | 6398 | CG44128-RB | 4347..5214 | 883..17 | 4315 | 99.9 | Minus |
Src42A-RA | 3017 | CG44128-RA | 1261..2128 | 883..17 | 4315 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:32:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 6011401..6011611 | 227..17 | 1055 | 100 | Minus |
2R | 25286936 | 2R | 6010920..6011110 | 582..392 | 910 | 98.4 | Minus |
2R | 25286936 | 2R | 6011169..6011338 | 394..225 | 850 | 100 | Minus |
2R | 25286936 | 2R | 6010609..6010768 | 730..571 | 800 | 100 | Minus |
2R | 25286936 | 2R | 6010400..6010550 | 877..727 | 755 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 11:32:18 has no hits.
BS08478.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:41:47 Download gff for
BS08478.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7873-PA | 687..1554 | 17..883 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:41:25 Download gff for
BS08478.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7873-PA | 687..1554 | 17..883 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 07:53:19 Download gff for
BS08478.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Src42A-RA | 1261..2142 | 5..883 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:48:35 Download gff for
BS08478.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Src42A-RA | 1261..2142 | 5..883 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:48:35 Download gff for
BS08478.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 6010932..6011109 | 393..570 | 100 | -> | Minus |
2R | 6011171..6011337 | 226..392 | 100 | -> | Minus |
2R | 6011403..6011625 | 5..225 | 97 | | Minus |
2R | 6010393..6010547 | 730..883 | 99 | -> | Minus |
2R | 6010610..6010768 | 571..729 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 07:53:19 Download gff for
BS08478.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 1897898..1898052 | 730..883 | 99 | -> | Minus |
arm_2R | 1898115..1898273 | 571..729 | 100 | -> | Minus |
arm_2R | 1898437..1898614 | 393..570 | 100 | -> | Minus |
arm_2R | 1898676..1898842 | 226..392 | 100 | -> | Minus |
arm_2R | 1898908..1899130 | 5..225 | 97 | | Minus |
BS08478.5prime Sequence
951 bp (803 high quality bases) assembled on 2006-01-10
> BS08478.5prime
GAAGTTATCAGTCGACATGGGTAACTGCCTCACCACACAGAAGGGCGAAC
CCGACAAGCCCGCAGATCGAATCAAGCTGGACGACCCGCCCACCATCGGA
GTCGGAGTGGGCGTGCCACAAATCCCCATGCCCTCACACGCCGGACAGCC
ACCGGAGCAGATACGTCCGGTTCCCCAGATCCCGGAGAGCGAAACGGCAG
GTGCCAACGCCAAGATTTTTGTCGCCCTCTACGACTACGACGCCCGCACC
GACGAGGATTTGAGCTTCCGCAAGGGAGAGCACTTGGAGATACTGAATGA
CACGCAGGGTGACTGGTGGCTGGCGCGGAGCAAGAAGACACGTTCGGAAG
GCTACATTCCATCCAATTATGTGGCCAAGTTGAAATCAATCGAAGCAGAA
CCCTGGTACTTCCGCAAAATCAAACGCATTGAGGCTGAGAAAAAACTTCT
ACTGCCAGAGAACGAGCACGGTGCATTTTTAATTCGCGATTCCGAAAGCC
GTCACAACGACTACTCGCTATCAGTGCGCGATGGCGATACGGTTAAGCAT
TATCGCATCAGACAATTGGACGAAGGCGGCTTCTTCATCGCCAGGCGCAC
GACATTCAGAACCCTTCAGGAGCTGGTGGAACACTATTCGAAGGACTCTG
ATGGCCTATGCGTCAACCTCTGCAAGCCGTGTGTCCAGATCGAGAAGCCT
GTAACTGAGGGGCTTTCGCACCGCACTCGCGATCAGTGGGAGATCGACAG
AACGTCTTTGAAATTCGTGCGCAAACTGGGCTCCGGACAGTTTGGCGATG
TCTGGGAGGGATTGTGGAACAACACAACACCTGTGGCAATTAAAACTCTG
AAATCTGGTACAATGGACCCCAAGGATTTCTTAGCGGAAGCCCAGATCAT
GAAGAAACTGCGCCACACCAAGCTTATACAGTTGTACGCTGTCTGCACTG
T
BS08478.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:07:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7873-PB | 1554 | Src42A-RB | 1..935 | 17..951 | 4675 | 100 | Plus |
CG7873-PA | 1554 | Src42A-RA | 1..935 | 17..951 | 4675 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:43:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Src42A-RA | 3017 | CG44128-RA | 575..1509 | 17..951 | 4675 | 100 | Plus |
Src42A-RB | 6398 | CG44128-RB | 4046..4595 | 402..951 | 2750 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:43:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 5982418..5982709 | 17..308 | 1460 | 100 | Plus |
2R | 25286936 | 2R | 6010376..6010550 | 686..860 | 875 | 100 | Plus |
2R | 25286936 | 2R | 6009063..6009184 | 403..524 | 610 | 100 | Plus |
2R | 25286936 | 2R | 5986570..5986666 | 306..402 | 485 | 100 | Plus |
2R | 25286936 | 2R | 6010609..6010703 | 857..951 | 475 | 100 | Plus |
2R | 25286936 | 2R | 6009268..6009355 | 522..609 | 440 | 100 | Plus |
2R | 25286936 | 2R | 6009420..6009501 | 607..688 | 410 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 23:43:13 has no hits.
BS08478.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:41:48 Download gff for
BS08478.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7873-PA | 1..935 | 17..951 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:41:27 Download gff for
BS08478.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7873-PA | 1..935 | 17..951 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:38:32 Download gff for
BS08478.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Src42A-RA | 565..1509 | 8..951 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 01:19:57 Download gff for
BS08478.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Src42A-RA | 565..1509 | 8..951 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 01:19:57 Download gff for
BS08478.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 6009063..6009184 | 403..524 | 100 | -> | Plus |
2R | 6009271..6009355 | 525..609 | 100 | -> | Plus |
2R | 6009423..6009501 | 610..688 | 100 | -> | Plus |
2R | 6010379..6010547 | 689..857 | 100 | -> | Plus |
2R | 6010610..6010703 | 858..951 | 100 | | Plus |
2R | 5982408..5982708 | 8..307 | 98 | -> | Plus |
2R | 5986572..5986666 | 308..402 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:38:32 Download gff for
BS08478.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 1869913..1870213 | 8..307 | 98 | -> | Plus |
arm_2R | 1874077..1874171 | 308..402 | 100 | -> | Plus |
arm_2R | 1896568..1896689 | 403..524 | 100 | -> | Plus |
arm_2R | 1896776..1896860 | 525..609 | 100 | -> | Plus |
arm_2R | 1896928..1897006 | 610..688 | 100 | -> | Plus |
arm_2R | 1897884..1898052 | 689..857 | 100 | -> | Plus |
arm_2R | 1898115..1898208 | 858..951 | 100 | | Plus |
BS08478.complete Sequence
1586 bp (1586 high quality bases) assembled on 2006-01-18
GenBank Submission: FJ636175
> BS08478.complete
GAAGTTATCAGTCGACATGGGTAACTGCCTCACCACACAGAAGGGCGAAC
CCGACAAGCCCGCAGATCGAATCAAGCTGGACGACCCGCCCACCATCGGA
GTCGGAGTGGGCGTGCCACAAATCCCCATGCCCTCACACGCCGGACAGCC
ACCGGAGCAGATACGTCCGGTTCCCCAGATCCCGGAGAGCGAAACGGCAG
GTGCCAACGCCAAGATTTTTGTCGCCCTCTACGACTACGACGCCCGCACC
GACGAGGATTTGAGCTTCCGCAAGGGAGAGCACTTGGAGATACTGAATGA
CACGCAGGGTGACTGGTGGCTGGCGCGGAGCAAGAAGACACGTTCGGAAG
GCTACATTCCATCCAATTATGTGGCCAAGTTGAAATCAATCGAAGCAGAA
CCCTGGTACTTCCGCAAAATCAAACGCATTGAGGCTGAGAAAAAACTTCT
ACTGCCAGAGAACGAGCACGGTGCATTTTTAATTCGCGATTCCGAAAGCC
GTCACAACGACTACTCGCTATCAGTGCGCGATGGCGATACGGTTAAGCAT
TATCGCATCAGACAATTGGACGAAGGCGGCTTCTTCATCGCCAGGCGCAC
GACATTCAGAACCCTTCAGGAGCTGGTGGAACACTATTCGAAGGACTCTG
ATGGCCTATGCGTCAACCTCTGCAAGCCGTGTGTCCAGATCGAGAAGCCT
GTAACTGAGGGGCTTTCGCACCGCACTCGCGATCAGTGGGAGATCGACAG
AACGTCTTTGAAATTCGTGCGCAAACTGGGCTCCGGACAGTTTGGCGATG
TCTGGGAGGGATTGTGGAACAACACAACACCTGTGGCAATTAAAACTCTG
AAATCTGGTACAATGGACCCCAAGGATTTCTTAGCGGAAGCCCAGATCAT
GAAGAAACTGCGCCACACCAAGCTTATACAGTTGTACGCTGTCTGCACTG
TTGAGGAGCCTATCTATATTATCACAGAGTTAATGAAGCACGGTTCACTG
TTGGAATATCTCCAAGCCATTGCAGGCAAGGGTCGTAGCCTTAAAATGCA
AACTCTGATTGATATGGCAGCGCAAATAGCTGCTGGCATGGCTTACTTGG
AGTCCCAGAATTATATTCATAGGGATTTAGCGGCGCGCAATGTACTGGTA
GGCGATGGAAACATCGTCAAAATCGCCGACTTTGGTTTAGCTAGGCTCAT
CAAGGAGGACGAATACGAGGCGCGGGTAGGCGCCAGATTTCCCATAAAAT
GGACCGCTCCAGAGGCTGCTAACTACAGCAAATTCTCAATAAAATCGGAT
GTTTGGAGCTTTGGCATTCTTCTCACAGAACTGGTCACCTACGGACGCAT
ACCATATCCAGGCATGACCAACGCTGAGGTGCTAACGCAAGTGGAGCACG
GCTATCGAATGCCGCAACCTCCCAACTGCGAGCCGCGCCTGTATGAGATT
ATGCTGGAATGTTGGCACAAGGACCCCATGCGCAGACCCACGTTTGAGAC
GCTACAATGGAAACTGGAAGACTTCTATACATCTGATCAGAGCGACTACA
AAGAGGCGCAGGCCTACTGAAAGCTTTCTAGACCAT
BS08478.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:32:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Src42A-RA | 1554 | CG44128-PA | 1..1554 | 17..1570 | 7770 | 100 | Plus |
Src42A-RB | 4794 | CG44128-PB | 3626..4794 | 402..1570 | 5845 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:32:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Src42A-RA | 3017 | CG44128-RA | 575..2128 | 17..1570 | 7770 | 100 | Plus |
Src42A-RB | 6398 | CG44128-RB | 4046..5214 | 402..1570 | 5845 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:32:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 5982418..5982709 | 17..308 | 1460 | 100 | Plus |
2R | 25286936 | 2R | 6011401..6011611 | 1360..1570 | 1055 | 100 | Plus |
2R | 25286936 | 2R | 6010920..6011110 | 1005..1195 | 910 | 98.4 | Plus |
2R | 25286936 | 2R | 6010376..6010550 | 686..860 | 875 | 100 | Plus |
2R | 25286936 | 2R | 6011169..6011338 | 1193..1362 | 850 | 100 | Plus |
2R | 25286936 | 2R | 6010609..6010768 | 857..1016 | 800 | 100 | Plus |
2R | 25286936 | 2R | 6009063..6009184 | 403..524 | 610 | 100 | Plus |
2R | 25286936 | 2R | 5986570..5986666 | 306..402 | 485 | 100 | Plus |
2R | 25286936 | 2R | 6009268..6009355 | 522..609 | 440 | 100 | Plus |
2R | 25286936 | 2R | 6009420..6009501 | 607..688 | 410 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 05:32:25 has no hits.
BS08478.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:03:06 Download gff for
BS08478.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Src42A-RA | 1..1554 | 17..1570 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:43:11 Download gff for
BS08478.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Src42A-RA | 572..2124 | 17..1569 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:15:14 Download gff for
BS08478.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Src42A-RA | 575..2127 | 17..1569 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:03:07 Download gff for
BS08478.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Src42A-RA | 562..2139 | 8..1582 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:13:18 Download gff for
BS08478.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Src42A-RA | 575..2127 | 17..1569 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:13:18 Download gff for
BS08478.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 5982418..5982708 | 17..307 | 100 | -> | Plus |
2R | 5986572..5986666 | 308..402 | 100 | -> | Plus |
2R | 6009063..6009184 | 403..524 | 100 | -> | Plus |
2R | 6009271..6009355 | 525..609 | 100 | -> | Plus |
2R | 6009423..6009501 | 610..688 | 100 | -> | Plus |
2R | 6010379..6010547 | 689..857 | 100 | -> | Plus |
2R | 6010610..6010768 | 858..1016 | 100 | -> | Plus |
2R | 6010932..6011109 | 1017..1194 | 100 | -> | Plus |
2R | 6011171..6011337 | 1195..1361 | 100 | -> | Plus |
2R | 6011403..6011610 | 1362..1569 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:15:14 Download gff for
BS08478.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 1896568..1896689 | 403..524 | 100 | -> | Plus |
arm_2R | 1896776..1896860 | 525..609 | 100 | -> | Plus |
arm_2R | 1896928..1897006 | 610..688 | 100 | -> | Plus |
arm_2R | 1897884..1898052 | 689..857 | 100 | -> | Plus |
arm_2R | 1898115..1898273 | 858..1016 | 100 | -> | Plus |
arm_2R | 1898908..1899115 | 1362..1569 | 100 | | Plus |
arm_2R | 1898437..1898614 | 1017..1194 | 100 | -> | Plus |
arm_2R | 1898676..1898842 | 1195..1361 | 100 | -> | Plus |
arm_2R | 1869923..1870213 | 17..307 | 100 | -> | Plus |
arm_2R | 1874077..1874171 | 308..402 | 100 | -> | Plus |
BS08478.pep Sequence
Translation from 16 to 1569
> BS08478.pep
MGNCLTTQKGEPDKPADRIKLDDPPTIGVGVGVPQIPMPSHAGQPPEQIR
PVPQIPESETAGANAKIFVALYDYDARTDEDLSFRKGEHLEILNDTQGDW
WLARSKKTRSEGYIPSNYVAKLKSIEAEPWYFRKIKRIEAEKKLLLPENE
HGAFLIRDSESRHNDYSLSVRDGDTVKHYRIRQLDEGGFFIARRTTFRTL
QELVEHYSKDSDGLCVNLCKPCVQIEKPVTEGLSHRTRDQWEIDRTSLKF
VRKLGSGQFGDVWEGLWNNTTPVAIKTLKSGTMDPKDFLAEAQIMKKLRH
TKLIQLYAVCTVEEPIYIITELMKHGSLLEYLQAIAGKGRSLKMQTLIDM
AAQIAAGMAYLESQNYIHRDLAARNVLVGDGNIVKIADFGLARLIKEDEY
EARVGARFPIKWTAPEAANYSKFSIKSDVWSFGILLTELVTYGRIPYPGM
TNAEVLTQVEHGYRMPQPPNCEPRLYEIMLECWHKDPMRRPTFETLQWKL
EDFYTSDQSDYKEAQAY*
BS08478.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:21:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Src42A-PA | 517 | CG44128-PA | 1..517 | 1..517 | 2742 | 100 | Plus |
Src42A-PB | 1597 | CG44128-PB | 1205..1597 | 125..517 | 2054 | 98.7 | Plus |
Src64B-PD | 552 | CG7524-PD | 98..551 | 66..515 | 1227 | 51.9 | Plus |
Src64B-PC | 552 | CG7524-PC | 98..551 | 66..515 | 1227 | 51.9 | Plus |
Src64B-PI | 552 | CG7524-PI | 98..551 | 66..515 | 1227 | 51.9 | Plus |