Clone BS08478 Report

Search the DGRC for BS08478

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:84
Well:78
Vector:pDNR-Dual
Associated Gene/TranscriptSrc42A-RA
Protein status:BS08478.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08478.3prime Sequence

883 bp (844 high quality bases) assembled on 2006-01-10

> BS08478.3prime
ATGGTCTAGAAAGCTTTCAGTAGGCCTGCGCCTCTTTGTAGTCGCTCTGA
TCAGATGTATAGAAGTCTTCCAGTTTCCATTGTAGCGTCTCAAACGTGGG
TCTGCGCATGGGGTCCTTGTGCCAACATTCCAGCATAATCTCATACAGGC
GCGGCTCGCAGTTGGGAGGTTGCGGCATTCGATAGCCGTGCTCCACTTGC
GTTAGCACCTCAGCGTTGGTCATGCCTGGATATGGTATGCGTCCGTAGGT
GACCAGTTCTGTGAGAAGAATGCCAAAGCTCCAAACATCCGATTTTATTG
AGAATTTGCTGTAGTTAGCAGCCTCTGGAGCGGTCCATTTTATGGGAAAT
CTGGCGCCTACCCGCGCCTCGTATTCGTCCTCCTTGATGAGCCTAGCTAA
ACCAAAGTCGGCGATTTTGACGATGTTTCCATCGCCTACCAGTACATTGC
GCGCCGCTAAATCCCTATGAATATAATTCTGGGACTCCAAGTAAGCCATG
CCAGCAGCTATTTGCGCTGCCATATCAATCAGAGTTTGCATTTTAAGGCT
ACGACCCTTGCCTGCAATGGCTTGGAGATATTCCAACAGTGAACCGTGCT
TCATTAACTCTGTGATAATATAGATAGGCTCCTCAACAGTGCAGACAGCG
TACAACTGTATAAGCTTGGTGTGGCGCAGTTTCTTCATGATCTGGGCTTC
CGCTAAGAAATCCTTGGGGTCCATTGTACCAGATTTCAGAGTTTTAATTG
CCACAGGTGTTGTGTTGTTCCACAATCCCTCCCAGACATCGCCAAACTGT
CCGGAGCCCAGTTTGCGCACGAATTTCAAAGACGTTCTGTCGATCTCCCA
CTGATCGCGAGTGCGGTGCGAAAGCCCTCAGTT

BS08478.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:07:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG7873-PB 1554 Src42A-RB 694..1554 877..17 4305 100 Minus
CG7873-PA 1554 Src42A-RA 694..1554 877..17 4305 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:32:20
Subject Length Description Subject Range Query Range Score Percent Strand
Src42A-RB 6398 CG44128-RB 4347..5214 883..17 4315 99.9 Minus
Src42A-RA 3017 CG44128-RA 1261..2128 883..17 4315 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:32:15
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6011401..6011611 227..17 1055 100 Minus
2R 25286936 2R 6010920..6011110 582..392 910 98.4 Minus
2R 25286936 2R 6011169..6011338 394..225 850 100 Minus
2R 25286936 2R 6010609..6010768 730..571 800 100 Minus
2R 25286936 2R 6010400..6010550 877..727 755 100 Minus
Blast to na_te.dros performed on 2015-02-11 11:32:18 has no hits.

BS08478.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:41:47 Download gff for BS08478.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7873-PA 687..1554 17..883 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:41:25 Download gff for BS08478.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7873-PA 687..1554 17..883 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 07:53:19 Download gff for BS08478.3prime
Subject Subject Range Query Range Percent Splice Strand
Src42A-RA 1261..2142 5..883 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:48:35 Download gff for BS08478.3prime
Subject Subject Range Query Range Percent Splice Strand
Src42A-RA 1261..2142 5..883 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:48:35 Download gff for BS08478.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 6010932..6011109 393..570 100 -> Minus
2R 6011171..6011337 226..392 100 -> Minus
2R 6011403..6011625 5..225 97   Minus
2R 6010393..6010547 730..883 99 -> Minus
2R 6010610..6010768 571..729 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 07:53:19 Download gff for BS08478.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 1897898..1898052 730..883 99 -> Minus
arm_2R 1898115..1898273 571..729 100 -> Minus
arm_2R 1898437..1898614 393..570 100 -> Minus
arm_2R 1898676..1898842 226..392 100 -> Minus
arm_2R 1898908..1899130 5..225 97   Minus

BS08478.5prime Sequence

951 bp (803 high quality bases) assembled on 2006-01-10

> BS08478.5prime
GAAGTTATCAGTCGACATGGGTAACTGCCTCACCACACAGAAGGGCGAAC
CCGACAAGCCCGCAGATCGAATCAAGCTGGACGACCCGCCCACCATCGGA
GTCGGAGTGGGCGTGCCACAAATCCCCATGCCCTCACACGCCGGACAGCC
ACCGGAGCAGATACGTCCGGTTCCCCAGATCCCGGAGAGCGAAACGGCAG
GTGCCAACGCCAAGATTTTTGTCGCCCTCTACGACTACGACGCCCGCACC
GACGAGGATTTGAGCTTCCGCAAGGGAGAGCACTTGGAGATACTGAATGA
CACGCAGGGTGACTGGTGGCTGGCGCGGAGCAAGAAGACACGTTCGGAAG
GCTACATTCCATCCAATTATGTGGCCAAGTTGAAATCAATCGAAGCAGAA
CCCTGGTACTTCCGCAAAATCAAACGCATTGAGGCTGAGAAAAAACTTCT
ACTGCCAGAGAACGAGCACGGTGCATTTTTAATTCGCGATTCCGAAAGCC
GTCACAACGACTACTCGCTATCAGTGCGCGATGGCGATACGGTTAAGCAT
TATCGCATCAGACAATTGGACGAAGGCGGCTTCTTCATCGCCAGGCGCAC
GACATTCAGAACCCTTCAGGAGCTGGTGGAACACTATTCGAAGGACTCTG
ATGGCCTATGCGTCAACCTCTGCAAGCCGTGTGTCCAGATCGAGAAGCCT
GTAACTGAGGGGCTTTCGCACCGCACTCGCGATCAGTGGGAGATCGACAG
AACGTCTTTGAAATTCGTGCGCAAACTGGGCTCCGGACAGTTTGGCGATG
TCTGGGAGGGATTGTGGAACAACACAACACCTGTGGCAATTAAAACTCTG
AAATCTGGTACAATGGACCCCAAGGATTTCTTAGCGGAAGCCCAGATCAT
GAAGAAACTGCGCCACACCAAGCTTATACAGTTGTACGCTGTCTGCACTG
T

BS08478.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:07:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG7873-PB 1554 Src42A-RB 1..935 17..951 4675 100 Plus
CG7873-PA 1554 Src42A-RA 1..935 17..951 4675 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:43:14
Subject Length Description Subject Range Query Range Score Percent Strand
Src42A-RA 3017 CG44128-RA 575..1509 17..951 4675 100 Plus
Src42A-RB 6398 CG44128-RB 4046..4595 402..951 2750 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:43:12
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 5982418..5982709 17..308 1460 100 Plus
2R 25286936 2R 6010376..6010550 686..860 875 100 Plus
2R 25286936 2R 6009063..6009184 403..524 610 100 Plus
2R 25286936 2R 5986570..5986666 306..402 485 100 Plus
2R 25286936 2R 6010609..6010703 857..951 475 100 Plus
2R 25286936 2R 6009268..6009355 522..609 440 100 Plus
2R 25286936 2R 6009420..6009501 607..688 410 100 Plus
Blast to na_te.dros performed on 2015-02-10 23:43:13 has no hits.

BS08478.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:41:48 Download gff for BS08478.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7873-PA 1..935 17..951 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:41:27 Download gff for BS08478.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7873-PA 1..935 17..951 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:38:32 Download gff for BS08478.5prime
Subject Subject Range Query Range Percent Splice Strand
Src42A-RA 565..1509 8..951 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 01:19:57 Download gff for BS08478.5prime
Subject Subject Range Query Range Percent Splice Strand
Src42A-RA 565..1509 8..951 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 01:19:57 Download gff for BS08478.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 6009063..6009184 403..524 100 -> Plus
2R 6009271..6009355 525..609 100 -> Plus
2R 6009423..6009501 610..688 100 -> Plus
2R 6010379..6010547 689..857 100 -> Plus
2R 6010610..6010703 858..951 100   Plus
2R 5982408..5982708 8..307 98 -> Plus
2R 5986572..5986666 308..402 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:38:32 Download gff for BS08478.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 1869913..1870213 8..307 98 -> Plus
arm_2R 1874077..1874171 308..402 100 -> Plus
arm_2R 1896568..1896689 403..524 100 -> Plus
arm_2R 1896776..1896860 525..609 100 -> Plus
arm_2R 1896928..1897006 610..688 100 -> Plus
arm_2R 1897884..1898052 689..857 100 -> Plus
arm_2R 1898115..1898208 858..951 100   Plus

BS08478.complete Sequence

1586 bp (1586 high quality bases) assembled on 2006-01-18

GenBank Submission: FJ636175

> BS08478.complete
GAAGTTATCAGTCGACATGGGTAACTGCCTCACCACACAGAAGGGCGAAC
CCGACAAGCCCGCAGATCGAATCAAGCTGGACGACCCGCCCACCATCGGA
GTCGGAGTGGGCGTGCCACAAATCCCCATGCCCTCACACGCCGGACAGCC
ACCGGAGCAGATACGTCCGGTTCCCCAGATCCCGGAGAGCGAAACGGCAG
GTGCCAACGCCAAGATTTTTGTCGCCCTCTACGACTACGACGCCCGCACC
GACGAGGATTTGAGCTTCCGCAAGGGAGAGCACTTGGAGATACTGAATGA
CACGCAGGGTGACTGGTGGCTGGCGCGGAGCAAGAAGACACGTTCGGAAG
GCTACATTCCATCCAATTATGTGGCCAAGTTGAAATCAATCGAAGCAGAA
CCCTGGTACTTCCGCAAAATCAAACGCATTGAGGCTGAGAAAAAACTTCT
ACTGCCAGAGAACGAGCACGGTGCATTTTTAATTCGCGATTCCGAAAGCC
GTCACAACGACTACTCGCTATCAGTGCGCGATGGCGATACGGTTAAGCAT
TATCGCATCAGACAATTGGACGAAGGCGGCTTCTTCATCGCCAGGCGCAC
GACATTCAGAACCCTTCAGGAGCTGGTGGAACACTATTCGAAGGACTCTG
ATGGCCTATGCGTCAACCTCTGCAAGCCGTGTGTCCAGATCGAGAAGCCT
GTAACTGAGGGGCTTTCGCACCGCACTCGCGATCAGTGGGAGATCGACAG
AACGTCTTTGAAATTCGTGCGCAAACTGGGCTCCGGACAGTTTGGCGATG
TCTGGGAGGGATTGTGGAACAACACAACACCTGTGGCAATTAAAACTCTG
AAATCTGGTACAATGGACCCCAAGGATTTCTTAGCGGAAGCCCAGATCAT
GAAGAAACTGCGCCACACCAAGCTTATACAGTTGTACGCTGTCTGCACTG
TTGAGGAGCCTATCTATATTATCACAGAGTTAATGAAGCACGGTTCACTG
TTGGAATATCTCCAAGCCATTGCAGGCAAGGGTCGTAGCCTTAAAATGCA
AACTCTGATTGATATGGCAGCGCAAATAGCTGCTGGCATGGCTTACTTGG
AGTCCCAGAATTATATTCATAGGGATTTAGCGGCGCGCAATGTACTGGTA
GGCGATGGAAACATCGTCAAAATCGCCGACTTTGGTTTAGCTAGGCTCAT
CAAGGAGGACGAATACGAGGCGCGGGTAGGCGCCAGATTTCCCATAAAAT
GGACCGCTCCAGAGGCTGCTAACTACAGCAAATTCTCAATAAAATCGGAT
GTTTGGAGCTTTGGCATTCTTCTCACAGAACTGGTCACCTACGGACGCAT
ACCATATCCAGGCATGACCAACGCTGAGGTGCTAACGCAAGTGGAGCACG
GCTATCGAATGCCGCAACCTCCCAACTGCGAGCCGCGCCTGTATGAGATT
ATGCTGGAATGTTGGCACAAGGACCCCATGCGCAGACCCACGTTTGAGAC
GCTACAATGGAAACTGGAAGACTTCTATACATCTGATCAGAGCGACTACA
AAGAGGCGCAGGCCTACTGAAAGCTTTCTAGACCAT

BS08478.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:32:25
Subject Length Description Subject Range Query Range Score Percent Strand
Src42A-RA 1554 CG44128-PA 1..1554 17..1570 7770 100 Plus
Src42A-RB 4794 CG44128-PB 3626..4794 402..1570 5845 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:32:26
Subject Length Description Subject Range Query Range Score Percent Strand
Src42A-RA 3017 CG44128-RA 575..2128 17..1570 7770 100 Plus
Src42A-RB 6398 CG44128-RB 4046..5214 402..1570 5845 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:32:24
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 5982418..5982709 17..308 1460 100 Plus
2R 25286936 2R 6011401..6011611 1360..1570 1055 100 Plus
2R 25286936 2R 6010920..6011110 1005..1195 910 98.4 Plus
2R 25286936 2R 6010376..6010550 686..860 875 100 Plus
2R 25286936 2R 6011169..6011338 1193..1362 850 100 Plus
2R 25286936 2R 6010609..6010768 857..1016 800 100 Plus
2R 25286936 2R 6009063..6009184 403..524 610 100 Plus
2R 25286936 2R 5986570..5986666 306..402 485 100 Plus
2R 25286936 2R 6009268..6009355 522..609 440 100 Plus
2R 25286936 2R 6009420..6009501 607..688 410 100 Plus
Blast to na_te.dros performed on 2014-11-28 05:32:25 has no hits.

BS08478.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:03:06 Download gff for BS08478.complete
Subject Subject Range Query Range Percent Splice Strand
Src42A-RA 1..1554 17..1570 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:43:11 Download gff for BS08478.complete
Subject Subject Range Query Range Percent Splice Strand
Src42A-RA 572..2124 17..1569 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:15:14 Download gff for BS08478.complete
Subject Subject Range Query Range Percent Splice Strand
Src42A-RA 575..2127 17..1569 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:03:07 Download gff for BS08478.complete
Subject Subject Range Query Range Percent Splice Strand
Src42A-RA 562..2139 8..1582 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:13:18 Download gff for BS08478.complete
Subject Subject Range Query Range Percent Splice Strand
Src42A-RA 575..2127 17..1569 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:13:18 Download gff for BS08478.complete
Subject Subject Range Query Range Percent Splice Strand
2R 5982418..5982708 17..307 100 -> Plus
2R 5986572..5986666 308..402 100 -> Plus
2R 6009063..6009184 403..524 100 -> Plus
2R 6009271..6009355 525..609 100 -> Plus
2R 6009423..6009501 610..688 100 -> Plus
2R 6010379..6010547 689..857 100 -> Plus
2R 6010610..6010768 858..1016 100 -> Plus
2R 6010932..6011109 1017..1194 100 -> Plus
2R 6011171..6011337 1195..1361 100 -> Plus
2R 6011403..6011610 1362..1569 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:15:14 Download gff for BS08478.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 1896568..1896689 403..524 100 -> Plus
arm_2R 1896776..1896860 525..609 100 -> Plus
arm_2R 1896928..1897006 610..688 100 -> Plus
arm_2R 1897884..1898052 689..857 100 -> Plus
arm_2R 1898115..1898273 858..1016 100 -> Plus
arm_2R 1898908..1899115 1362..1569 100   Plus
arm_2R 1898437..1898614 1017..1194 100 -> Plus
arm_2R 1898676..1898842 1195..1361 100 -> Plus
arm_2R 1869923..1870213 17..307 100 -> Plus
arm_2R 1874077..1874171 308..402 100 -> Plus

BS08478.pep Sequence

Translation from 16 to 1569

> BS08478.pep
MGNCLTTQKGEPDKPADRIKLDDPPTIGVGVGVPQIPMPSHAGQPPEQIR
PVPQIPESETAGANAKIFVALYDYDARTDEDLSFRKGEHLEILNDTQGDW
WLARSKKTRSEGYIPSNYVAKLKSIEAEPWYFRKIKRIEAEKKLLLPENE
HGAFLIRDSESRHNDYSLSVRDGDTVKHYRIRQLDEGGFFIARRTTFRTL
QELVEHYSKDSDGLCVNLCKPCVQIEKPVTEGLSHRTRDQWEIDRTSLKF
VRKLGSGQFGDVWEGLWNNTTPVAIKTLKSGTMDPKDFLAEAQIMKKLRH
TKLIQLYAVCTVEEPIYIITELMKHGSLLEYLQAIAGKGRSLKMQTLIDM
AAQIAAGMAYLESQNYIHRDLAARNVLVGDGNIVKIADFGLARLIKEDEY
EARVGARFPIKWTAPEAANYSKFSIKSDVWSFGILLTELVTYGRIPYPGM
TNAEVLTQVEHGYRMPQPPNCEPRLYEIMLECWHKDPMRRPTFETLQWKL
EDFYTSDQSDYKEAQAY*

BS08478.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:21:36
Subject Length Description Subject Range Query Range Score Percent Strand
Src42A-PA 517 CG44128-PA 1..517 1..517 2742 100 Plus
Src42A-PB 1597 CG44128-PB 1205..1597 125..517 2054 98.7 Plus
Src64B-PD 552 CG7524-PD 98..551 66..515 1227 51.9 Plus
Src64B-PC 552 CG7524-PC 98..551 66..515 1227 51.9 Plus
Src64B-PI 552 CG7524-PI 98..551 66..515 1227 51.9 Plus