Clone BS08479 Report

Search the DGRC for BS08479

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:84
Well:79
Vector:pDNR-Dual
Associated Gene/Transcriptaralar1-RA
Protein status:BS08479.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08479.3prime Sequence

928 bp (815 high quality bases) assembled on 2006-01-10

> BS08479.3prime
ATGGTCTAGAAAGCTTTCAGGATCCCGTGGCCGTCGAGGGCGAGGCAGCG
GTTACTCCGCGTCCAAATCGCGGCAGATACAACCCGAACTTGGACTCCAC
TCCCGCCAGAAGAGGAACTGCCGCCCGGTAGCCACCAATGTGGTCCACGT
TTTCGGTGGTCACCGACGCAGCCGCCTGTTCCAGGGGAGTGGTGATCTTG
TGCGCCTCGGATCCCTTGGGCTGAGTGCCTCCGAAGTCCACGTAGAAGAG
GCGCTGTAGCAGTTCGTAGGTCACCAGGGTCACACCGAACTGTGGTGAGG
AACGGAACACTCGAGCGGCTGTGCCCTTCCAGAAGGCTCTGGGTCCCTCC
TCGGCCATGATCTTCTTGGTGGCATCCCATACGCCGGTGTAGGTGGTCTG
TCCAGATCGGGCAACCACCTGAAGGCGGGTCTTGATGACGTCGGCGGGCG
TGACAAGGGAGGCGGCCGGAACACCGGCGATGGCACCGGCGGCCAGCAGG
GTGAGTGGATGATTGTAGCCGTCCTTGTCGGCCATCATGGCCTTGGTGTG
GGCGTAGGTCGGGAAGTAGATGGCCGAGAATGGCACATCGCGGAGGAGAC
ATGCTCTGGCTCCCTTGTAGAGGCCAAAGAGTCCCAGTTCCCGGACCACC
GACCACGCGCGGATCTTGCTCCCACTAGCGATTTCTCCCGCCACCTGGAG
ACGGATCTTCACAATCTCCAGGGGATTGGTGAACACCACCTGCGACGCAC
CGGCACATCCACCAGCCAGAACTTCCGCCCATGTGGGAATGTTGCCCTTC
TTGTCGGTGAGTTTGTCCCTCCCAAATCATTCACCGTCAGTTTGATGGCT
TTCTCGGGGGCCACGCCCATTAGCTGGGGCAGGAGACCTCTGTAGAGACC
CATGAATCCCTCGTGGCGAACCACCTTT

BS08479.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:07:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG2139-PA 2049 aralar1-RA 1245..2049 821..17 4025 100 Minus
CG2139-PD 2049 aralar1-RD 1245..2049 821..17 4025 100 Minus
CG2139-PC 2088 aralar1-RC 1284..2088 821..17 4025 100 Minus
CG2139-PB 2040 aralar1-RB 1236..2040 821..17 4025 100 Minus
CG2139-PA 2049 aralar1-RA 1137..1243 928..822 535 100 Minus
CG2139-PD 2049 aralar1-RD 1137..1243 928..822 535 100 Minus
CG2139-PC 2088 aralar1-RC 1176..1282 928..822 535 100 Minus
CG2139-PB 2040 aralar1-RB 1128..1234 928..822 535 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:33:01
Subject Length Description Subject Range Query Range Score Percent Strand
aralar1-RE 2845 CG2139-RE 1363..2275 928..17 4540 99.9 Minus
aralar1-RF 2770 CG2139-RF 1288..2200 928..17 4540 99.9 Minus
aralar1-RB 2945 CG2139-RB 1463..2375 928..17 4540 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 09:32:52
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30446564..30447175 316..926 3010 99.8 Plus
3R 32079331 3R 30446205..30446504 17..316 1500 100 Plus
Blast to na_te.dros performed on 2015-02-03 09:32:57 has no hits.

BS08479.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:41:50 Download gff for BS08479.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2139-PB 1128..2040 17..928 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:41:28 Download gff for BS08479.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2139-PC 1176..2088 17..928 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:47:22 Download gff for BS08479.3prime
Subject Subject Range Query Range Percent Splice Strand
aralar1-RB 1463..2377 11..928 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 10:01:20 Download gff for BS08479.3prime
Subject Subject Range Query Range Percent Splice Strand
aralar1-RB 1463..2377 11..928 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 10:01:20 Download gff for BS08479.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 30446198..30446503 11..315 98 <- Plus
3R 30446564..30447177 316..928 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:47:22 Download gff for BS08479.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26271920..26272225 11..315 98 <- Plus
arm_3R 26272286..26272899 316..928 99   Plus

BS08479.5prime Sequence

855 bp (854 high quality bases) assembled on 2006-01-10

> BS08479.5prime
GAAGTTATCAGTCGACATGCCGTTGACCAAGAGTTTGCCAAATTCTCCGT
CGCTTTTGAAGCGCGCCGGCACCGAAAAGTTGCGAGAGGTGTTCCTGAAG
TACGCATCCATCCAGAAGAATGGCGAGCACTATATGACCAGCGAGGACTT
CGTGCGAAAGTTCCTGGGACTCTTTTCCGAATCTGCATTTAATGACGAAT
CGGTGCGCCTGCTGGCCAACATTGCGGACACGAGCAAGGATGGACTCATC
TCCTTCTCGGAGTTCCAGGCGTTCGAGGGTCTGCTCTGCACTCCAGATGC
CCTCTACAGGACCGCTTTCCAGCTGTTCGACCGCAAGGGCAACGGCACTG
TTTCCTATGCTGACTTCGCTGATGTCGTACAAAAAACTGAACTGCACTCA
AAGATACCTTTTAGCTTAGATGGCCCCTTTATCAAGCGCTACTTTGGTGA
TAAGAAGCAACGCCTTATCAACTATGCTGAGTTCACGCAGCTGCTGCACG
ACTTTCACGAGGAGCACGCGATGGAGGCCTTCCGCAGCAAGGATCCAGCT
GGCACTGGGTTCATCTCGCCATTGGACTTCCAGGACATCATAGTTAATGT
TAAGCGGCATTTACTGACCCCCGGCGTCAGGGACAATCTAGTTTCGGTAA
CTGAGGGTCACAAAGTGAGCTTCCCGTATTTCATCGCATTTACCTCGCTG
CTGAACAACATGGAACTGATCAAACAAGTCTACCTGCACGCCACCGAGGG
CAGTCGCACGGATATGATCACCAAGGATCAGATCCTCCTCGCCGCCCAAA
CGATGAGCCAAATCACGCCGCTGGAGATCGACATACTTTTCCACCTGGCG
GGCGC

BS08479.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:07:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG2139-PA 2049 aralar1-RA 1..839 17..855 4195 100 Plus
CG2139-PD 2049 aralar1-RD 1..839 17..855 4195 100 Plus
CG2139-PC 2088 aralar1-RC 67..878 44..855 4060 100 Plus
CG2139-PB 2040 aralar1-RB 19..830 44..855 4060 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:46:18
Subject Length Description Subject Range Query Range Score Percent Strand
aralar1-RF 2770 CG2139-RF 152..990 17..855 4195 100 Plus
aralar1-RD 2340 CG2139-RD 152..990 17..855 4195 100 Plus
aralar1-RA 2770 CG2139-RA 152..990 17..855 4195 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:46:10
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30448361..30448570 855..646 1050 100 Minus
3R 32079331 3R 30448632..30448829 649..452 990 100 Minus
3R 32079331 3R 30449042..30449208 363..197 820 99.4 Minus
3R 32079331 3R 30449806..30449959 197..44 770 100 Minus
3R 32079331 3R 30448896..30448988 451..359 465 100 Minus
Blast to na_te.dros performed on 2015-02-11 10:46:14 has no hits.

BS08479.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:41:51 Download gff for BS08479.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2139-PD 1..839 17..855 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:41:30 Download gff for BS08479.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2139-PD 1..839 17..855 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:00:16 Download gff for BS08479.5prime
Subject Subject Range Query Range Percent Splice Strand
aralar1-RA 147..990 9..855 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:32:51 Download gff for BS08479.5prime
Subject Subject Range Query Range Percent Splice Strand
aralar1-RA 147..990 9..855 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:32:51 Download gff for BS08479.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 30448361..30448569 647..855 100 <- Minus
3R 30448635..30448829 452..646 100 <- Minus
3R 30448896..30448987 360..451 100 <- Minus
3R 30449046..30449208 197..359 100 <- Minus
3R 30449807..30449959 44..196 100 <- Minus
3R 30450229..30450260 9..43 91   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:00:16 Download gff for BS08479.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26274083..26274291 647..855 100 <- Minus
arm_3R 26274357..26274551 452..646 100 <- Minus
arm_3R 26274618..26274709 360..451 100 <- Minus
arm_3R 26274768..26274930 197..359 100 <- Minus
arm_3R 26275529..26275681 44..196 100 <- Minus
arm_3R 26275951..26275982 9..43 91   Minus

BS08479.complete Sequence

2081 bp assembled on 2008-01-16

GenBank Submission: FJ636176

> BS08479.complete
GAAGTTATCAGTCGACATGCCGTTGACCAAGAGTTTGCCAAATTCTCCGT
CGCTTTTGAAGCGCGCCGGCACCGAAAAGTTGCGAGAGGTGTTCCTGAAG
TACGCATCCATCCAGAAGAATGGCGAGCACTATATGACCAGCGAGGACTT
CGTGCGAAAGTTCCTGGGACTCTTTTCCGAATCTGCATTTAATGACGAAT
CGGTGCGCCTGCTGGCCAACATTGCGGACACGAGCAAGGATGGACTCATC
TCCTTCTCGGAGTTCCAGGCGTTCGAGGGTCTGCTCTGCACTCCAGATGC
CCTCTACAGGACCGCTTTCCAGCTGTTCGACCGCAAGGGCAACGGCACTG
TTTCCTATGCTGACTTCGCTGATGTCGTACAAAAAACTGAACTGCACTCA
AAGATACCTTTTAGCTTAGATGGCCCCTTTATCAAGCGCTACTTTGGTGA
TAAGAAGCAACGCCTTATCAACTATGCTGAGTTCACGCAGCTGCTGCACG
ACTTTCACGAGGAGCACGCGATGGAGGCCTTCCGCAGCAAGGATCCAGCT
GGCACTGGGTTCATCTCGCCATTGGACTTCCAGGACATCATAGTTAATGT
TAAGCGGCATTTACTGACCCCCGGCGTCAGGGACAATCTAGTTTCGGTAA
CTGAGGGTCACAAAGTGAGCTTCCCGTATTTCATCGCATTTACCTCGCTG
CTGAACAACATGGAACTGATCAAACAAGTCTACCTGCACGCCACCGAGGG
CAGTCGCACGGATATGATCACCAAGGATCAGATCCTCCTCGCCGCCCAAA
CGATGAGCCAAATCACGCCGCTGGAGATCGACATACTTTTCCACCTGGCG
GGCGCCGTCCATCAAGCAGGCCGCATCGACTATAGTGACCTGAGCAACAT
CGCACCCGAGCATTACACCAAGCATATGACACATCGTCTGGCGGAGATCA
AGGCGGTGGAGAGTCCTGCGGACCGATCTGCCTTTATTCAGGTCCTGGAG
AGCTCTTACCGTTTCACTCTCGGTTCCTTTGCCGGCGCTGTGGGCGCCAC
TGTGGTCTACCCCATCGATCTAGTCAAGACTCGAATGCAGAACCAGCGAG
CGGGTTCCTATATTGGTGAAGTTGCCTATCGAAACTCATGGGACTGCTTC
AAAAAGGTGGTTCGCCACGAGGGATTCATGGGTCTCTACAGAGGTCTCCT
GCCCCAGCTAATGGGCGTGGCCCCCGAGAAAGCCATCAAACTGACGGTGA
ATGATTTGGTGAGGGACAAACTCACCGACAAGAAGGGCAACATTCCCACA
TGGGCGGAAGTTCTGGCTGGTGGATGTGCCGGTGCGTCGCAGGTGGTGTT
CACCAATCCCCTGGAGATTGTGAAGATCCGTCTCCAGGTGGCGGGAGAAA
TCGCTAGTGGGAGCAAGATCCGCGCGTGGTCGGTGGTCCGGGAACTGGGA
CTCTTTGGCCTCTACAAGGGAGCCAGAGCATGTCTCCTCCGCGATGTGCC
ATTCTCGGCCATCTACTTCCCGACCTACGCCCACACCAAGGCCATGATGG
CCGACAAGGACGGCTACAATCATCCACTCACCCTGCTGGCCGCCGGTGCC
ATCGCCGGTGTTCCGGCCGCCTCCCTTGTCACGCCCGCCGACGTCATCAA
GACCCGCCTTCAGGTGGTTGCCCGATCTGGACAGACCACCTACACCGGCG
TATGGGATGCCACCAAGAAGATCATGGCCGAGGAGGGACCCAGAGCCTTC
TGGAAGGGCACAGCCGCTCGAGTGTTCCGTTCCTCACCACAGTTCGGTGT
GACCCTGGTGACCTACGAACTGCTACAGCGCCTCTTCTACGTGGACTTCG
GAGGCACTCAGCCCAAGGGATCCGAGGCGCACAAGATCACCACTCCCCTG
GAACAGGCGGCTGCGTCGGTGACCACCGAAAACGTGGACCACATTGGTGG
CTACCGGGCGGCAGTTCCTCTTCTGGCGGGAGTGGAGTCCAAGTTCGGGT
TGTATCTGCCGCGATTTGGACGCGGAGTAACCGCTGCCTCGCCCTCGACG
GCCACGGGATCCTGAAAGCTTTCTAGACCAT

BS08479.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:26:13
Subject Length Description Subject Range Query Range Score Percent Strand
aralar1-RF 2085 CG2139-PF 1..2049 17..2065 10245 100 Plus
aralar1-RD 2049 CG2139-PD 1..2049 17..2065 10245 100 Plus
aralar1-RA 2049 CG2139-PA 1..2049 17..2065 10245 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:26:15
Subject Length Description Subject Range Query Range Score Percent Strand
aralar1-RF 2770 CG2139-RF 152..2200 17..2065 10245 100 Plus
aralar1-RD 2340 CG2139-RD 152..2200 17..2065 10245 100 Plus
aralar1-RA 2770 CG2139-RA 152..2200 17..2065 10245 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:26:10
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30446564..30447175 1766..1155 3060 100 Minus
3R 32079331 3R 30446205..30446504 2065..1766 1500 100 Minus
3R 32079331 3R 30448346..30448570 870..646 1125 100 Minus
3R 32079331 3R 30448632..30448829 649..452 990 100 Minus
3R 32079331 3R 30447412..30447579 1037..870 840 100 Minus
3R 32079331 3R 30449042..30449208 363..197 820 99.4 Minus
3R 32079331 3R 30449806..30449959 197..44 770 100 Minus
3R 32079331 3R 30447228..30447349 1158..1037 610 100 Minus
3R 32079331 3R 30448896..30448988 451..359 465 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:26:12 has no hits.

BS08479.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:09:21 Download gff for BS08479.complete
Subject Subject Range Query Range Percent Splice Strand
aralar1-RD 1..2049 17..2065 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:30:38 Download gff for BS08479.complete
Subject Subject Range Query Range Percent Splice Strand
aralar1-RD 152..2199 17..2064 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:52:05 Download gff for BS08479.complete
Subject Subject Range Query Range Percent Splice Strand
aralar1-RA 152..2199 17..2064 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:09:21 Download gff for BS08479.complete
Subject Subject Range Query Range Percent Splice Strand
aralar1-RD 147..2202 9..2071 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:20:25 Download gff for BS08479.complete
Subject Subject Range Query Range Percent Splice Strand
aralar1-RA 152..2199 17..2064 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:20:25 Download gff for BS08479.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30449807..30449959 44..196 100 <- Minus
3R 30450229..30450255 17..43 100   Minus
3R 30446206..30446503 1767..2064 100 <- Minus
3R 30446564..30447173 1157..1766 100 <- Minus
3R 30447230..30447348 1038..1156 100 <- Minus
3R 30447412..30447578 871..1037 100 <- Minus
3R 30448346..30448569 647..870 100 <- Minus
3R 30448635..30448829 452..646 100 <- Minus
3R 30448896..30448987 360..451 100 <- Minus
3R 30449046..30449208 197..359 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:52:05 Download gff for BS08479.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26275529..26275681 44..196 100 <- Minus
arm_3R 26275951..26275977 17..43 100   Minus
arm_3R 26271928..26272225 1767..2064 100 <- Minus
arm_3R 26272286..26272895 1157..1766 100 <- Minus
arm_3R 26272952..26273070 1038..1156 100 <- Minus
arm_3R 26273134..26273300 871..1037 100 <- Minus
arm_3R 26274068..26274291 647..870 100 <- Minus
arm_3R 26274357..26274551 452..646 100 <- Minus
arm_3R 26274618..26274709 360..451 100 <- Minus
arm_3R 26274768..26274930 197..359 100 <- Minus

BS08479.pep Sequence

Translation from 16 to 2064

> BS08479.pep
MPLTKSLPNSPSLLKRAGTEKLREVFLKYASIQKNGEHYMTSEDFVRKFL
GLFSESAFNDESVRLLANIADTSKDGLISFSEFQAFEGLLCTPDALYRTA
FQLFDRKGNGTVSYADFADVVQKTELHSKIPFSLDGPFIKRYFGDKKQRL
INYAEFTQLLHDFHEEHAMEAFRSKDPAGTGFISPLDFQDIIVNVKRHLL
TPGVRDNLVSVTEGHKVSFPYFIAFTSLLNNMELIKQVYLHATEGSRTDM
ITKDQILLAAQTMSQITPLEIDILFHLAGAVHQAGRIDYSDLSNIAPEHY
TKHMTHRLAEIKAVESPADRSAFIQVLESSYRFTLGSFAGAVGATVVYPI
DLVKTRMQNQRAGSYIGEVAYRNSWDCFKKVVRHEGFMGLYRGLLPQLMG
VAPEKAIKLTVNDLVRDKLTDKKGNIPTWAEVLAGGCAGASQVVFTNPLE
IVKIRLQVAGEIASGSKIRAWSVVRELGLFGLYKGARACLLRDVPFSAIY
FPTYAHTKAMMADKDGYNHPLTLLAAGAIAGVPAASLVTPADVIKTRLQV
VARSGQTTYTGVWDATKKIMAEEGPRAFWKGTAARVFRSSPQFGVTLVTY
ELLQRLFYVDFGGTQPKGSEAHKITTPLEQAAASVTTENVDHIGGYRAAV
PLLAGVESKFGLYLPRFGRGVTAASPSTATGS*

BS08479.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:38:54
Subject Length Description Subject Range Query Range Score Percent Strand
aralar1-PF 694 CG2139-PF 1..682 1..682 3496 100 Plus
aralar1-PD 682 CG2139-PD 1..682 1..682 3496 100 Plus
aralar1-PA 682 CG2139-PA 1..682 1..682 3496 100 Plus
aralar1-PB 679 CG2139-PB 7..679 10..682 3449 100 Plus
aralar1-PC 695 CG2139-PC 23..695 10..682 3449 100 Plus