Clone BS08482 Report

Search the DGRC for BS08482

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:84
Well:82
Vector:pDNR-Dual
Associated Gene/TranscriptArp3-RA
Protein status:BS08482.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08482.3prime Sequence

945 bp (844 high quality bases) assembled on 2006-01-10

> BS08482.3prime
ATGGTCTAGAAAGCTTTTATGTCATGGTGCCAAAGACGGGATTGTGACGG
CAAATGCTGGGGCCATACTCCTCGTAGGCAGCCTTCGTGTGACACACCTG
ATAGAACTCGGGCGTTGAAGCCAACATGCTGCCTCCAAACCACACGGCGT
ACCTCTGCATGTGGTGCGTAATCACCTGAACATCAATGGGTTTTGGCTTA
ATGCGTCCCTCGGACAAATTCTCGCTGATCCGGAGACGTGTGTCCACCGA
TCGCTTGATATCTCGCTGCAACCTCCTGCCGAAGTCCTTGAACATCGTTG
ATCCACCGCTCAGAACAATGTTATTGTATAGAGGACGCCGCACATCGATT
GGGCAGTTTTGGATGACATTATCCACTATTTCCGACAGTGGAATGGTAAA
GTCGGGGTTTGAGAACTCGGGATGGAAGAAGATCTCGGGTCCCAGGAATC
GCTCGTAGCCCACGTCCACATTGAACGGCGCCTTGGTTACCGTGTTAACG
CCGCTAAAGTTGCGTATCCACTTGCCCGGCTCCGTGTCGTACTTGGCAAA
TTCTTTGGCGATATCGGGACAGATGTAGCAGTGCTTCTCCTTGATCGCTT
TAGCAGTCTCGAGGCTCTGTTCCGGCGGAATGCCCACCTCCCGTTCGCGT
AGCAGGCTCTGGATGAACGAGGTGATATTGCGGCCCGCGATGGGAATGTG
CTTGATGCAGGAGCCGATCACATAGCCCTCGGCCACGGGTATGACGTGCG
TCACTCCATCGCCGCTGTCCACCACGATGCCTGTAAGGGTACGCTCCTCT
GCGGACCGGGAGGCCCAACTGGCGGCTAGGGCAAGCACCGCCTGGACGGC
GATATACAGACCAGGAACGTTGAACGTCTCAACATTATCTCCGCGGTGTA
CTCCCGATTTTCGGGCGTATTTAGCGGCGGCTCAGTCAGCAGGAA

BS08482.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:07:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG7558-PA 1257 Arp66B-RA 392..1257 882..17 4330 100 Minus
CG7558-PA 1257 Arp66B-RA 328..392 945..881 325 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:25:32
Subject Length Description Subject Range Query Range Score Percent Strand
Arp3-RB 1585 CG7558-RB 505..1434 945..17 4625 99.9 Minus
Arp3-RA 1983 CG7558-RA 505..1434 945..17 4625 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:25:24
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8114257..8114794 197..734 2690 100 Plus
3L 28110227 3L 8115029..8115242 733..945 1020 99.5 Plus
3L 28110227 3L 8113956..8114052 17..113 485 100 Plus
3L 28110227 3L 8114113..8114198 113..198 430 100 Plus
Blast to na_te.dros performed on 2015-02-02 18:25:28 has no hits.

BS08482.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:41:54 Download gff for BS08482.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7558-PA 330..1257 17..943 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:41:35 Download gff for BS08482.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7558-PA 330..1257 17..943 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:41:00 Download gff for BS08482.3prime
Subject Subject Range Query Range Percent Splice Strand
Arp3-RA 505..1434 17..945 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:15:22 Download gff for BS08482.3prime
Subject Subject Range Query Range Percent Splice Strand
Arp3-RA 505..1434 17..945 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:15:22 Download gff for BS08482.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 8113956..8114051 17..112 100 <- Plus
3L 8114113..8114196 113..196 100 <- Plus
3L 8114257..8114793 197..733 100 <- Plus
3L 8115030..8115242 734..945 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:41:00 Download gff for BS08482.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8107056..8107151 17..112 100 <- Plus
arm_3L 8107213..8107296 113..196 100 <- Plus
arm_3L 8107357..8107893 197..733 100 <- Plus
arm_3L 8108130..8108342 734..945 99   Plus

BS08482.5prime Sequence

890 bp (826 high quality bases) assembled on 2006-01-10

> BS08482.5prime
GAAGTTATCAGTCGACATGGCAGGCAGGCTACCGGCATGCGTAATCGATG
TGGGCACCGGCTACTCCAAACTGGGATTTGCCGGGAATAAAGAGCCGCAG
TTCATTATTCCCTCGGCGATTGCCATCAAGGAGTCGGCACGAGTGGGAGA
CACCAACACACGGCGCATCACAAAGGGCATCGAGGACCTGGACTTCTTCA
TCGGCGATGAGGCCTTCGATGCCACCGGCTACTCCATCAAGTATCCGGTG
CGTCATGGTCTGGTGGAGGACTGGGACTTGATGGAGCGCTTTCTGGAGCA
GTGCGTCTTTAAGTATCTGCGCGCCGAGCCTGAGGATCACTACTTCCTGC
TGACTGAGCCGCCGCTAAATACGCCCGAAAATCGGGAGTACACCGCGGAG
ATAATGTTTGAGACGTTCAACGTTCCTGGTCTGTATATCGCCGTCCAGGC
GGTGCTTGCCCTAGCCGCCAGTTGGGCCTCCCGGTCCGCAGAGGAGCGTA
CCCTTACAGGCATCGTGGTGGACAGCGGCGATGGAGTGACGCACGTCATA
CCCGTGGCCGAGGGCTATGTGATCGGCTCCTGCATCAAGCACATTCCCAT
CGCGGGCCGCAATATCACCTCGTTCATCCAGAGCCTGCTACGCGAACGGG
AGGTGGGCATTCCGCCGGAACAGAGCCTCGAGACTGCTAAAGCGATCAAG
GAGAAGCACTGCTACATCTGTCCCGATATCGCCAAAGAATTTGCCAAGTA
CGACACGGAGCCGGGCAAGTGGATACGCAACTTTAGCGGCGTTAACACGG
TAACCAAGGCGCCGTTCAATGTGGACGTGGGCTACGAGCGATTCCTGGGA
CCCGAGATCTTCTTCCATCCGAGTTCTCAAACCCCGACTT

BS08482.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:07:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG7558-PA 1257 Arp66B-RA 1..854 17..870 4270 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:40:32
Subject Length Description Subject Range Query Range Score Percent Strand
Arp3-RB 1585 CG7558-RB 177..1052 16..890 4355 99.9 Plus
Arp3-RA 1983 CG7558-RA 177..1052 16..890 4355 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:40:26
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8114459..8114794 890..556 1630 99.7 Minus
3L 28110227 3L 8115029..8115346 557..240 1590 100 Minus
3L 28110227 3L 8115408..8115589 241..60 910 100 Minus
3L 28110227 3L 8115682..8115726 60..16 225 100 Minus
Blast to na_te.dros performed on 2015-02-11 17:40:29 has no hits.

BS08482.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:41:55 Download gff for BS08482.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7558-PA 1..875 17..890 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:41:36 Download gff for BS08482.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7558-PA 1..875 17..890 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:19:54 Download gff for BS08482.5prime
Subject Subject Range Query Range Percent Splice Strand
Arp3-RA 170..1052 9..890 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:28:06 Download gff for BS08482.5prime
Subject Subject Range Query Range Percent Splice Strand
Arp3-RA 170..1052 9..890 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:28:06 Download gff for BS08482.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 8114459..8114793 557..890 99 <- Minus
3L 8115030..8115344 242..556 100 <- Minus
3L 8115408..8115588 61..241 100 <- Minus
3L 8115682..8115733 9..60 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:19:54 Download gff for BS08482.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8107559..8107893 557..890 99 <- Minus
arm_3L 8108130..8108444 242..556 100 <- Minus
arm_3L 8108508..8108688 61..241 100 <- Minus
arm_3L 8108782..8108833 9..60 96   Minus

BS08482.complete Sequence

1289 bp (1289 high quality bases) assembled on 2006-01-18

GenBank Submission: FJ638812

> BS08482.complete
GAAGTTATCAGTCGACATGGCAGGCAGGCTACCGGCATGCGTAATCGATG
TGGGCACCGGCTACTCCAAACTGGGATTTGCCGGGAATAAAGAGCCGCAG
TTCATTATTCCCTCGGCGATTGCCATCAAGGAGTCGGCACGAGTGGGAGA
CACCAACACACGGCGCATCACAAAGGGCATCGAGGACCTGGACTTCTTCA
TCGGCGATGAGGCCTTCGATGCCACCGGCTACTCCATCAAGTATCCGGTG
CGTCATGGTCTGGTGGAGGACTGGGACTTGATGGAGCGCTTTCTGGAGCA
GTGCGTCTTTAAGTATCTGCGCGCCGAGCCTGAGGATCACTACTTCCTGC
TGACTGAGCCGCCGCTAAATACGCCCGAAAATCGGGAGTACACCGCGGAG
ATAATGTTTGAGACGTTCAACGTTCCTGGTCTGTATATCGCCGTCCAGGC
GGTGCTTGCCCTAGCCGCCAGTTGGGCCTCCCGGTCCGCAGAGGAGCGTA
CCCTTACAGGCATCGTGGTGGACAGCGGCGATGGAGTGACGCACGTCATA
CCCGTGGCCGAGGGCTATGTGATCGGCTCCTGCATCAAGCACATTCCCAT
CGCGGGCCGCAATATCACCTCGTTCATCCAGAGCCTGCTACGCGAACGGG
AGGTGGGCATTCCGCCGGAACAGAGCCTCGAGACTGCTAAAGCGATCAAG
GAGAAGCACTGCTACATCTGTCCCGATATCGCCAAAGAATTTGCCAAGTA
CGACACGGAGCCGGGCAAGTGGATACGCAACTTTAGCGGCGTTAACACGG
TAACCAAGGCGCCGTTCAATGTGGACGTGGGCTACGAGCGATTCCTGGGA
CCCGAGATCTTCTTCCATCCCGAGTTCTCAAACCCCGACTTTACCATTCC
ACTGTCGGAAATAGTGGATAATGTCATCCAAAACTGCCCAATCGATGTGC
GGCGTCCTCTATACAATAACATTGTTCTGAGCGGTGGATCAACGATGTTC
AAGGACTTCGGCAGGAGGTTGCAGCGAGATATCAAGCGATCGGTGGACAC
ACGTCTCCGGATCAGCGAGAATTTGTCCGAGGGACGCATTAAGCCAAAAC
CCATTGATGTTCAGGTGATTACGCACCACATGCAGAGGTACGCCGTGTGG
TTTGGAGGCAGCATGTTGGCTTCAACGCCCGAGTTCTATCAGGTGTGTCA
CACGAAGGCTGCCTACGAGGAGTATGGCCCCAGCATTTGCCGTCACAATC
CCGTCTTTGGCACCATGACATAAAAGCTTTCTAGACCAT

BS08482.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:51:54
Subject Length Description Subject Range Query Range Score Percent Strand
Arp3-RB 1257 CG7558-PB 1..1257 17..1273 6285 100 Plus
Arp3-RA 1257 CG7558-PA 1..1257 17..1273 6285 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:51:56
Subject Length Description Subject Range Query Range Score Percent Strand
Arp3-RB 1585 CG7558-RB 177..1434 16..1273 6290 100 Plus
Arp3-RA 1983 CG7558-RA 177..1434 16..1273 6290 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:51:52
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8114257..8114794 1093..556 2690 100 Minus
3L 28110227 3L 8115029..8115346 557..240 1590 100 Minus
3L 28110227 3L 8115408..8115589 241..60 910 100 Minus
3L 28110227 3L 8113956..8114052 1273..1177 485 100 Minus
3L 28110227 3L 8114113..8114198 1177..1092 430 100 Minus
3L 28110227 3L 8115682..8115726 60..16 225 100 Minus
Blast to na_te.dros performed on 2014-11-27 01:51:53 has no hits.

BS08482.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:03:07 Download gff for BS08482.complete
Subject Subject Range Query Range Percent Splice Strand
Arp66B-RA 1..1257 17..1273 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:41:03 Download gff for BS08482.complete
Subject Subject Range Query Range Percent Splice Strand
Arp66B-RA 168..1432 9..1273 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:03:41 Download gff for BS08482.complete
Subject Subject Range Query Range Percent Splice Strand
Arp3-RA 178..1432 17..1271 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:03:08 Download gff for BS08482.complete
Subject Subject Range Query Range Percent Splice Strand
Arp66B-RA 168..1432 9..1273 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:33:13 Download gff for BS08482.complete
Subject Subject Range Query Range Percent Splice Strand
Arp3-RA 178..1432 17..1271 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:33:13 Download gff for BS08482.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8113958..8114051 1178..1271 100 <- Minus
3L 8114113..8114196 1094..1177 100 <- Minus
3L 8114257..8114793 557..1093 100 <- Minus
3L 8115030..8115344 242..556 100 <- Minus
3L 8115408..8115588 61..241 100 <- Minus
3L 8115682..8115725 17..60 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:03:41 Download gff for BS08482.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8107058..8107151 1178..1271 100 <- Minus
arm_3L 8107213..8107296 1094..1177 100 <- Minus
arm_3L 8107357..8107893 557..1093 100 <- Minus
arm_3L 8108130..8108444 242..556 100 <- Minus
arm_3L 8108508..8108688 61..241 100 <- Minus
arm_3L 8108782..8108825 17..60 100   Minus

BS08482.pep Sequence

Translation from 16 to 1272

> BS08482.pep
MAGRLPACVIDVGTGYSKLGFAGNKEPQFIIPSAIAIKESARVGDTNTRR
ITKGIEDLDFFIGDEAFDATGYSIKYPVRHGLVEDWDLMERFLEQCVFKY
LRAEPEDHYFLLTEPPLNTPENREYTAEIMFETFNVPGLYIAVQAVLALA
ASWASRSAEERTLTGIVVDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRNI
TSFIQSLLREREVGIPPEQSLETAKAIKEKHCYICPDIAKEFAKYDTEPG
KWIRNFSGVNTVTKAPFNVDVGYERFLGPEIFFHPEFSNPDFTIPLSEIV
DNVIQNCPIDVRRPLYNNIVLSGGSTMFKDFGRRLQRDIKRSVDTRLRIS
ENLSEGRIKPKPIDVQVITHHMQRYAVWFGGSMLASTPEFYQVCHTKAAY
EEYGPSICRHNPVFGTMT*

BS08482.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:21:33
Subject Length Description Subject Range Query Range Score Percent Strand
Arp3-PB 418 CG7558-PB 1..418 1..418 2211 100 Plus
Arp3-PA 418 CG7558-PA 1..418 1..418 2211 100 Plus
Act87E-PC 376 CG18290-PC 8..370 7..407 648 35.8 Plus
Act87E-PB 376 CG18290-PB 8..370 7..407 648 35.8 Plus
Act87E-PA 376 CG18290-PA 8..370 7..407 648 35.8 Plus