Clone Sequence Records
BS08482.3prime Sequence
945 bp (844 high quality bases) assembled on 2006-01-10
> BS08482.3prime
ATGGTCTAGAAAGCTTTTATGTCATGGTGCCAAAGACGGGATTGTGACGG
CAAATGCTGGGGCCATACTCCTCGTAGGCAGCCTTCGTGTGACACACCTG
ATAGAACTCGGGCGTTGAAGCCAACATGCTGCCTCCAAACCACACGGCGT
ACCTCTGCATGTGGTGCGTAATCACCTGAACATCAATGGGTTTTGGCTTA
ATGCGTCCCTCGGACAAATTCTCGCTGATCCGGAGACGTGTGTCCACCGA
TCGCTTGATATCTCGCTGCAACCTCCTGCCGAAGTCCTTGAACATCGTTG
ATCCACCGCTCAGAACAATGTTATTGTATAGAGGACGCCGCACATCGATT
GGGCAGTTTTGGATGACATTATCCACTATTTCCGACAGTGGAATGGTAAA
GTCGGGGTTTGAGAACTCGGGATGGAAGAAGATCTCGGGTCCCAGGAATC
GCTCGTAGCCCACGTCCACATTGAACGGCGCCTTGGTTACCGTGTTAACG
CCGCTAAAGTTGCGTATCCACTTGCCCGGCTCCGTGTCGTACTTGGCAAA
TTCTTTGGCGATATCGGGACAGATGTAGCAGTGCTTCTCCTTGATCGCTT
TAGCAGTCTCGAGGCTCTGTTCCGGCGGAATGCCCACCTCCCGTTCGCGT
AGCAGGCTCTGGATGAACGAGGTGATATTGCGGCCCGCGATGGGAATGTG
CTTGATGCAGGAGCCGATCACATAGCCCTCGGCCACGGGTATGACGTGCG
TCACTCCATCGCCGCTGTCCACCACGATGCCTGTAAGGGTACGCTCCTCT
GCGGACCGGGAGGCCCAACTGGCGGCTAGGGCAAGCACCGCCTGGACGGC
GATATACAGACCAGGAACGTTGAACGTCTCAACATTATCTCCGCGGTGTA
CTCCCGATTTTCGGGCGTATTTAGCGGCGGCTCAGTCAGCAGGAA
BS08482.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:07:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7558-PA | 1257 | Arp66B-RA | 392..1257 | 882..17 | 4330 | 100 | Minus |
CG7558-PA | 1257 | Arp66B-RA | 328..392 | 945..881 | 325 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:25:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arp3-RB | 1585 | CG7558-RB | 505..1434 | 945..17 | 4625 | 99.9 | Minus |
Arp3-RA | 1983 | CG7558-RA | 505..1434 | 945..17 | 4625 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:25:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8114257..8114794 | 197..734 | 2690 | 100 | Plus |
3L | 28110227 | 3L | 8115029..8115242 | 733..945 | 1020 | 99.5 | Plus |
3L | 28110227 | 3L | 8113956..8114052 | 17..113 | 485 | 100 | Plus |
3L | 28110227 | 3L | 8114113..8114198 | 113..198 | 430 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 18:25:28 has no hits.
BS08482.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:41:54 Download gff for
BS08482.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7558-PA | 330..1257 | 17..943 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:41:35 Download gff for
BS08482.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7558-PA | 330..1257 | 17..943 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:41:00 Download gff for
BS08482.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arp3-RA | 505..1434 | 17..945 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:15:22 Download gff for
BS08482.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arp3-RA | 505..1434 | 17..945 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:15:22 Download gff for
BS08482.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8113956..8114051 | 17..112 | 100 | <- | Plus |
3L | 8114113..8114196 | 113..196 | 100 | <- | Plus |
3L | 8114257..8114793 | 197..733 | 100 | <- | Plus |
3L | 8115030..8115242 | 734..945 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:41:00 Download gff for
BS08482.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8107056..8107151 | 17..112 | 100 | <- | Plus |
arm_3L | 8107213..8107296 | 113..196 | 100 | <- | Plus |
arm_3L | 8107357..8107893 | 197..733 | 100 | <- | Plus |
arm_3L | 8108130..8108342 | 734..945 | 99 | | Plus |
BS08482.5prime Sequence
890 bp (826 high quality bases) assembled on 2006-01-10
> BS08482.5prime
GAAGTTATCAGTCGACATGGCAGGCAGGCTACCGGCATGCGTAATCGATG
TGGGCACCGGCTACTCCAAACTGGGATTTGCCGGGAATAAAGAGCCGCAG
TTCATTATTCCCTCGGCGATTGCCATCAAGGAGTCGGCACGAGTGGGAGA
CACCAACACACGGCGCATCACAAAGGGCATCGAGGACCTGGACTTCTTCA
TCGGCGATGAGGCCTTCGATGCCACCGGCTACTCCATCAAGTATCCGGTG
CGTCATGGTCTGGTGGAGGACTGGGACTTGATGGAGCGCTTTCTGGAGCA
GTGCGTCTTTAAGTATCTGCGCGCCGAGCCTGAGGATCACTACTTCCTGC
TGACTGAGCCGCCGCTAAATACGCCCGAAAATCGGGAGTACACCGCGGAG
ATAATGTTTGAGACGTTCAACGTTCCTGGTCTGTATATCGCCGTCCAGGC
GGTGCTTGCCCTAGCCGCCAGTTGGGCCTCCCGGTCCGCAGAGGAGCGTA
CCCTTACAGGCATCGTGGTGGACAGCGGCGATGGAGTGACGCACGTCATA
CCCGTGGCCGAGGGCTATGTGATCGGCTCCTGCATCAAGCACATTCCCAT
CGCGGGCCGCAATATCACCTCGTTCATCCAGAGCCTGCTACGCGAACGGG
AGGTGGGCATTCCGCCGGAACAGAGCCTCGAGACTGCTAAAGCGATCAAG
GAGAAGCACTGCTACATCTGTCCCGATATCGCCAAAGAATTTGCCAAGTA
CGACACGGAGCCGGGCAAGTGGATACGCAACTTTAGCGGCGTTAACACGG
TAACCAAGGCGCCGTTCAATGTGGACGTGGGCTACGAGCGATTCCTGGGA
CCCGAGATCTTCTTCCATCCGAGTTCTCAAACCCCGACTT
BS08482.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:07:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7558-PA | 1257 | Arp66B-RA | 1..854 | 17..870 | 4270 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:40:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arp3-RB | 1585 | CG7558-RB | 177..1052 | 16..890 | 4355 | 99.9 | Plus |
Arp3-RA | 1983 | CG7558-RA | 177..1052 | 16..890 | 4355 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:40:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8114459..8114794 | 890..556 | 1630 | 99.7 | Minus |
3L | 28110227 | 3L | 8115029..8115346 | 557..240 | 1590 | 100 | Minus |
3L | 28110227 | 3L | 8115408..8115589 | 241..60 | 910 | 100 | Minus |
3L | 28110227 | 3L | 8115682..8115726 | 60..16 | 225 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:40:29 has no hits.
BS08482.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:41:55 Download gff for
BS08482.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7558-PA | 1..875 | 17..890 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:41:36 Download gff for
BS08482.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7558-PA | 1..875 | 17..890 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:19:54 Download gff for
BS08482.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arp3-RA | 170..1052 | 9..890 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:28:06 Download gff for
BS08482.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arp3-RA | 170..1052 | 9..890 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:28:06 Download gff for
BS08482.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8114459..8114793 | 557..890 | 99 | <- | Minus |
3L | 8115030..8115344 | 242..556 | 100 | <- | Minus |
3L | 8115408..8115588 | 61..241 | 100 | <- | Minus |
3L | 8115682..8115733 | 9..60 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:19:54 Download gff for
BS08482.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8107559..8107893 | 557..890 | 99 | <- | Minus |
arm_3L | 8108130..8108444 | 242..556 | 100 | <- | Minus |
arm_3L | 8108508..8108688 | 61..241 | 100 | <- | Minus |
arm_3L | 8108782..8108833 | 9..60 | 96 | | Minus |
BS08482.complete Sequence
1289 bp (1289 high quality bases) assembled on 2006-01-18
GenBank Submission: FJ638812
> BS08482.complete
GAAGTTATCAGTCGACATGGCAGGCAGGCTACCGGCATGCGTAATCGATG
TGGGCACCGGCTACTCCAAACTGGGATTTGCCGGGAATAAAGAGCCGCAG
TTCATTATTCCCTCGGCGATTGCCATCAAGGAGTCGGCACGAGTGGGAGA
CACCAACACACGGCGCATCACAAAGGGCATCGAGGACCTGGACTTCTTCA
TCGGCGATGAGGCCTTCGATGCCACCGGCTACTCCATCAAGTATCCGGTG
CGTCATGGTCTGGTGGAGGACTGGGACTTGATGGAGCGCTTTCTGGAGCA
GTGCGTCTTTAAGTATCTGCGCGCCGAGCCTGAGGATCACTACTTCCTGC
TGACTGAGCCGCCGCTAAATACGCCCGAAAATCGGGAGTACACCGCGGAG
ATAATGTTTGAGACGTTCAACGTTCCTGGTCTGTATATCGCCGTCCAGGC
GGTGCTTGCCCTAGCCGCCAGTTGGGCCTCCCGGTCCGCAGAGGAGCGTA
CCCTTACAGGCATCGTGGTGGACAGCGGCGATGGAGTGACGCACGTCATA
CCCGTGGCCGAGGGCTATGTGATCGGCTCCTGCATCAAGCACATTCCCAT
CGCGGGCCGCAATATCACCTCGTTCATCCAGAGCCTGCTACGCGAACGGG
AGGTGGGCATTCCGCCGGAACAGAGCCTCGAGACTGCTAAAGCGATCAAG
GAGAAGCACTGCTACATCTGTCCCGATATCGCCAAAGAATTTGCCAAGTA
CGACACGGAGCCGGGCAAGTGGATACGCAACTTTAGCGGCGTTAACACGG
TAACCAAGGCGCCGTTCAATGTGGACGTGGGCTACGAGCGATTCCTGGGA
CCCGAGATCTTCTTCCATCCCGAGTTCTCAAACCCCGACTTTACCATTCC
ACTGTCGGAAATAGTGGATAATGTCATCCAAAACTGCCCAATCGATGTGC
GGCGTCCTCTATACAATAACATTGTTCTGAGCGGTGGATCAACGATGTTC
AAGGACTTCGGCAGGAGGTTGCAGCGAGATATCAAGCGATCGGTGGACAC
ACGTCTCCGGATCAGCGAGAATTTGTCCGAGGGACGCATTAAGCCAAAAC
CCATTGATGTTCAGGTGATTACGCACCACATGCAGAGGTACGCCGTGTGG
TTTGGAGGCAGCATGTTGGCTTCAACGCCCGAGTTCTATCAGGTGTGTCA
CACGAAGGCTGCCTACGAGGAGTATGGCCCCAGCATTTGCCGTCACAATC
CCGTCTTTGGCACCATGACATAAAAGCTTTCTAGACCAT
BS08482.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:51:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arp3-RB | 1257 | CG7558-PB | 1..1257 | 17..1273 | 6285 | 100 | Plus |
Arp3-RA | 1257 | CG7558-PA | 1..1257 | 17..1273 | 6285 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:51:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arp3-RB | 1585 | CG7558-RB | 177..1434 | 16..1273 | 6290 | 100 | Plus |
Arp3-RA | 1983 | CG7558-RA | 177..1434 | 16..1273 | 6290 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:51:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8114257..8114794 | 1093..556 | 2690 | 100 | Minus |
3L | 28110227 | 3L | 8115029..8115346 | 557..240 | 1590 | 100 | Minus |
3L | 28110227 | 3L | 8115408..8115589 | 241..60 | 910 | 100 | Minus |
3L | 28110227 | 3L | 8113956..8114052 | 1273..1177 | 485 | 100 | Minus |
3L | 28110227 | 3L | 8114113..8114198 | 1177..1092 | 430 | 100 | Minus |
3L | 28110227 | 3L | 8115682..8115726 | 60..16 | 225 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:51:53 has no hits.
BS08482.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:03:07 Download gff for
BS08482.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arp66B-RA | 1..1257 | 17..1273 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:41:03 Download gff for
BS08482.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arp66B-RA | 168..1432 | 9..1273 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:03:41 Download gff for
BS08482.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arp3-RA | 178..1432 | 17..1271 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:03:08 Download gff for
BS08482.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arp66B-RA | 168..1432 | 9..1273 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:33:13 Download gff for
BS08482.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arp3-RA | 178..1432 | 17..1271 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:33:13 Download gff for
BS08482.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8113958..8114051 | 1178..1271 | 100 | <- | Minus |
3L | 8114113..8114196 | 1094..1177 | 100 | <- | Minus |
3L | 8114257..8114793 | 557..1093 | 100 | <- | Minus |
3L | 8115030..8115344 | 242..556 | 100 | <- | Minus |
3L | 8115408..8115588 | 61..241 | 100 | <- | Minus |
3L | 8115682..8115725 | 17..60 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:03:41 Download gff for
BS08482.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8107058..8107151 | 1178..1271 | 100 | <- | Minus |
arm_3L | 8107213..8107296 | 1094..1177 | 100 | <- | Minus |
arm_3L | 8107357..8107893 | 557..1093 | 100 | <- | Minus |
arm_3L | 8108130..8108444 | 242..556 | 100 | <- | Minus |
arm_3L | 8108508..8108688 | 61..241 | 100 | <- | Minus |
arm_3L | 8108782..8108825 | 17..60 | 100 | | Minus |
BS08482.pep Sequence
Translation from 16 to 1272
> BS08482.pep
MAGRLPACVIDVGTGYSKLGFAGNKEPQFIIPSAIAIKESARVGDTNTRR
ITKGIEDLDFFIGDEAFDATGYSIKYPVRHGLVEDWDLMERFLEQCVFKY
LRAEPEDHYFLLTEPPLNTPENREYTAEIMFETFNVPGLYIAVQAVLALA
ASWASRSAEERTLTGIVVDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRNI
TSFIQSLLREREVGIPPEQSLETAKAIKEKHCYICPDIAKEFAKYDTEPG
KWIRNFSGVNTVTKAPFNVDVGYERFLGPEIFFHPEFSNPDFTIPLSEIV
DNVIQNCPIDVRRPLYNNIVLSGGSTMFKDFGRRLQRDIKRSVDTRLRIS
ENLSEGRIKPKPIDVQVITHHMQRYAVWFGGSMLASTPEFYQVCHTKAAY
EEYGPSICRHNPVFGTMT*
BS08482.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:21:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arp3-PB | 418 | CG7558-PB | 1..418 | 1..418 | 2211 | 100 | Plus |
Arp3-PA | 418 | CG7558-PA | 1..418 | 1..418 | 2211 | 100 | Plus |
Act87E-PC | 376 | CG18290-PC | 8..370 | 7..407 | 648 | 35.8 | Plus |
Act87E-PB | 376 | CG18290-PB | 8..370 | 7..407 | 648 | 35.8 | Plus |
Act87E-PA | 376 | CG18290-PA | 8..370 | 7..407 | 648 | 35.8 | Plus |