Clone BS08483 Report

Search the DGRC for BS08483

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:84
Well:83
Vector:pDNR-Dual
Associated Gene/TranscriptCaper-RA
Protein status:BS08483.pep: gold
Sequenced Size:16

Clone Sequence Records

BS08483.3prime Sequence

903 bp (816 high quality bases) assembled on 2006-01-10

> BS08483.3prime
ATGGTCTAGAAAGCTTTCAATCGTCGGTGTTCTTGCGCGTGGACGTCACC
AGATCGACGGCGTTGATGGAGTCCGGAAACATGGTGTGATAGTTGATCAC
GGGCACGTAGGCCGCCGTGATCACTCGACCGGCAAACCAGCGTCCATGCA
GTGCATTCACTGCCAGCACTGCGGTCGTTGTGCTCGGGCACTTGACATAC
ACGGTTCCCGTGTGCGAAATGGTGTCCACGTGGATGTGCAGCACCCCGCC
GTGTTTGGCGCACTCCTCCAGCACATCGTCGCGGATCTCAACGTCCCAGG
TAGGATTTGTCTCGGTACGCGGATCAAACATATTGGACAGTATGAAGCAC
TGTGTGGCTATCGATGGTGCCACCTCCTGCTGCTGCAACGGCGCCGGTTG
AGGTGCTGTAGCCAGCAGCGCATTGGCAGCCGCCTGGGGCACTGCCAAAC
CGGCTCCTTCCGCCAGCTTGAACATCAGCTGCAGACGTCCCGTGGCACCC
AGATCGATGCCCGTGCGATCCATCTCGTCGGTGTCCAGCGAGGTGGTATT
CATGTCCAGTCGCTCCGTCACATTGCCCACTTTCATGAGCCGACCGGCCA
GTTCAAAGCCGTTCAGCTGTTCCAGAGCCTTTTTGGCATCGTCAGCATTG
TGGTACGTGATAAAGCCGTAGCCCTTGGATCGGCCCGTCTCCGTATCCAT
GATCAGTTGAATGGCATCGATCTTGCCAAAGGGCTCGAATATGCCCCGCA
GCATGTCCTCGGTAATGTTGAAGTGCAGTGATCCCACGTAGAGGCGCATG
GGACCCGTGTGACTCTTCGGTTGGAATGCCGGCGCTGCATTCTGGAGACG
ATTCTTCTCAGCCTGCGTGTGCTGCACCATGATGGGTACACCGAGCAGCC
GCT

BS08483.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:07:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG11266-PA 1785 CG11266-RA 899..1785 903..17 4435 100 Minus
CG11266-PB 1785 CG11266-RB 899..1785 903..17 4435 100 Minus
CG11266-PF 864 CG11266-RF 1..864 880..17 4320 100 Minus
CG11266-PG 864 CG11266-RG 1..864 880..17 4320 100 Minus
CG11266-PD 864 CG11266-RD 1..864 880..17 4320 100 Minus
CG11266-PE 864 CG11266-RE 1..864 880..17 4320 100 Minus
CG11266-PC 864 CG11266-RC 1..864 880..17 4320 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:12:58
Subject Length Description Subject Range Query Range Score Percent Strand
Caper-RL 2484 CG11266-RL 1435..2321 903..17 4435 100 Minus
Caper-RK 3145 CG11266-RK 1831..2717 903..17 4435 100 Minus
Caper-RJ 2453 CG11266-RJ 1404..2290 903..17 4435 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:12:56
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7036811..7037450 656..17 3200 100 Minus
2L 23513712 2L 7036475..7036722 903..656 1240 100 Minus
Blast to na_te.dros performed on 2015-02-12 04:12:57 has no hits.

BS08483.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:41:56 Download gff for BS08483.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11266-PB 899..1785 17..903 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:41:38 Download gff for BS08483.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11266-PB 899..1785 17..903 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:40:56 Download gff for BS08483.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11266-RE 1404..2293 12..903 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:55:34 Download gff for BS08483.3prime
Subject Subject Range Query Range Percent Splice Strand
Caper-RJ 1404..2293 12..903 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:55:34 Download gff for BS08483.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 7036475..7036722 656..903 100 -> Minus
2L 7036812..7037453 12..655 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:40:56 Download gff for BS08483.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7036475..7036722 656..903 100 -> Minus
arm_2L 7036812..7037453 12..655 99   Minus

BS08483.5prime Sequence

836 bp (773 high quality bases) assembled on 2006-01-10

> BS08483.5prime
GAAGTTATCAGTCGACATGGCCGAGGACTTTGATGTGGAGGCGATGCTCG
AGGCGCCGTACATGAAAAACAATGTCAGTGCGGGCAGCGGTGGAAGTGGT
GGACGCAAGCGCAGCGGCAGCAGTCCAGGCGGCGGCGGTGGACACGATGA
CGACTACGCCGAGAATGGTCCGCGGAACGGCAGCGGCGGCGGAAGCTCAC
ACAAAAAGCAAAGCAAACGATCCCGGAGTAGAAGCGGCTCGCGTGATGGC
AAATCTCGACGAGATCGCGGCAATGAACGCAGCAGTCATCGGGACAAGGA
TAAGGAGCGCGATCGTAACCGCGACGGCGGCGACCGAGATCGACACCGCA
GGGAAGGTGGCGATCGAGATCGGGAGCGGGAACGTGAGCGCGAACGCGAC
AGATCTCGTCGGAGTCGTTCGCGTGATGAGCGCGGTGGAGGTGGTCGCTA
CGGCGATCGTGACAAGGATCGCCGCTCGCGAGATCGACGCGGCGGCAGCA
AGTCGTTGCAAGTGGATCGCTCGCGGGACAAGCGTCGACGCAGTCGTTCC
CGCGATCAGCAGCGCAAACGGCTGAGTCCGATCCGTGAACGCAAGCGCAG
CCATTCCCGCTCGAGGGACAGAAATAGCCGCCGTCGGGGAACCAATTCTC
CGCGACGCCGCTCACCACCGAATGGAGCTGATCGCACCACGCCCACCGAA
CTCAGTCCCGAGGAGCGGGACGCCCGCACCGTTTTCTGCATCCAGTTGTC
GCAGCGAGTGCGAGCCCGTGACCTGNAGGAGTTTTTCTCCAGCGTCGGCA
AGGTGCGCGACGTGCGTCTAATCACATGCAACAAGA

BS08483.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:07:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG11266-PA 1785 CG11266-RA 1..820 17..836 4081 99.8 Plus
CG11266-PB 1785 CG11266-RB 1..820 17..836 4081 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:56:45
Subject Length Description Subject Range Query Range Score Percent Strand
Caper-RB 2457 CG11266-RB 245..1064 17..836 4089 99.9 Plus
Caper-RA 2128 CG11266-RA 181..1000 17..836 4089 99.9 Plus
Caper-RL 2484 CG11266-RL 591..1356 71..836 3819 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:56:41
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7035636..7036035 225..624 2000 100 Plus
2L 23513712 2L 7036185..7036396 625..836 1049 99.5 Plus
2L 23513712 2L 7035407..7035562 71..226 780 100 Plus
2L 23513712 2L 7032965..7033018 17..70 270 100 Plus
Blast to na_te.dros performed 2015-02-12 18:56:43
Subject Length Description Subject Range Query Range Score Percent Strand
R1A1-element 5356 R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). 668..714 120..74 118 72.3 Minus

BS08483.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:41:57 Download gff for BS08483.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11266-PB 1..819 17..835 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:41:40 Download gff for BS08483.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11266-PB 1..819 17..835 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:27:16 Download gff for BS08483.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11266-RA 175..999 12..835 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:27:32 Download gff for BS08483.5prime
Subject Subject Range Query Range Percent Splice Strand
Caper-RA 175..999 12..835 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:27:32 Download gff for BS08483.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 7035637..7036035 226..624 100 -> Plus
2L 7036185..7036395 625..835 99   Plus
2L 7032959..7033018 12..70 96 -> Plus
2L 7035407..7035561 71..225 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:27:16 Download gff for BS08483.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7035407..7035561 71..225 100 -> Plus
arm_2L 7032959..7033018 12..70 96 -> Plus
arm_2L 7035637..7036035 226..624 100 -> Plus
arm_2L 7036185..7036395 625..835 99   Plus

BS08483.complete Sequence

1817 bp assembled on 2008-01-16

GenBank Submission: FJ636178

> BS08483.complete
GAAGTTATCAGTCGACATGGCCGAGGACTTTGATGTGGAGGCGATGCTCG
AGGCGCCGTACATGAAAAACAATGTCAGTGCGGGCAGCGGTGGAAGTGGT
GGACGCAAGCGCAGCGGCAGCAGTCCAGGCGGCGGCGGTGGACACGATGA
CGACTACGCCGAGAATGGTCCGCGGAACGGCAGCGGCGGCGGAAGCTCAC
ACAAAAAGCAAAGCAAACGATCCCGGAGTAGAAGCGGCTCGCGTGATGGC
AAATCTCGACGAGATCGCGGCAATGAACGCAGCAGTCATCGGGACAAGGA
TAAGGAGCGCGATCGTAACCGCGACGGCGGCGACCGAGATCGACACCGCA
GGGAAGGTGGCGATCGAGATCGGGAGCGGGAACGTGAGCGCGAACGCGAC
AGATCTCGTCGGAGTCGTTCGCGTGATGAGCGCGGTGGAGGTGGTCGCTA
CGGCGATCGTGACAAGGATCGCCGCTCGCGAGATCGACGCGGCGGCAGCA
AGTCGTTGCAAGTGGATCGCTCGCGGGACAAGCGTCGACGCAGTCGTTCC
CGCGATCAGCAGCGCAAACGGCTGAGTCCGATCCGTGAACGCAAGCGCAG
CCATTCCCGCTCGAGGGACAGAAATAGCCGCCGTCGGGGAACCAATTCTC
CGCGACGCCGCTCACCACCGAATGGAGCTGATCGCACCACGCCCACCGAA
CTCAGTCCCGAGGAGCGGGACGCCCGCACCGTTTTCTGCATCCAGTTGTC
GCAGCGAGTGCGAGCCCGTGACCTGGAGGAGTTTTTCTCCAGCGTCGGCA
AGGTGCGCGACGTGCGTCTAATCACATGCAACAAGACGAAACGCTTCAAG
GGCATTGCCTACATTGAGTTCGATGATCCTGAGTCCGTGGCACTGGCCCT
GGGCCTCTCTGGCCAGCGGCTGCTCGGTGTACCCATCATGGTGCAGCACA
CGCAGGCTGAGAAGAATCGTCTCCAGAATGCAGCGCCGGCATTCCAACCG
AAGAGTCACACGGGTCCCATGCGCCTCTACGTGGGATCACTGCACTTCAA
CATTACCGAGGACATGCTGCGGGGCATATTCGAGCCCTTTGGCAAGATCG
ATGCCATTCAACTGATCATGGATACGGAGACGGGCCGATCCAAGGGCTAC
GGCTTTATCACGTACCACAATGCTGACGATGCCAAAAAGGCTCTGGAACA
GCTGAACGGCTTTGAACTGGCCGGTCGGCTCATGAAAGTGGGCAATGTGA
CGGAGCGACTGGACATGAATACCACCTCGCTGGACACCGACGAGATGGAT
CGCACGGGCATCGATCTGGGTGCCACGGGACGTCTGCAGCTGATGTTCAA
GCTGGCGGAAGGAGCCGGTTTGGCAGTGCCCCAGGCGGCTGCCAATGCGC
TGCTGGCTACAGCACCTCAACCGGCGCCGTTGCAGCAGCAGGAGGTGGCA
CCATCGATAGCCACACAGTGCTTCATACTGTCCAATATGTTTGATCCGCG
TACCGAGACAAATCCTACCTGGGACGTTGAGATCCGCGACGATGTGCTGG
AGGAGTGCGCCAAACACGGCGGGGTGCTGCACATCCACGTGGACACCATT
TCGCACACGGGAACCGTGTATGTCAAGTGCCCGAGCACAACGACCGCAGT
GCTGGCAGTGAATGCACTGCATGGACGCTGGTTTGCCGGTCGAGTGATCA
CGGCGGCCTACGTGCCCGTGATCAACTATCACACCATGTTTCCGGACTCC
ATCAACGCCGTCGATCTGGTGACGTCCACGCGCAAGAACACCGACGATTG
AAAGCTTTCTAGACCAT

BS08483.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:18:14
Subject Length Description Subject Range Query Range Score Percent Strand
Caper-RB 1785 CG11266-PB 1..1785 17..1801 8925 100 Plus
Caper-RA 1785 CG11266-PA 1..1785 17..1801 8925 100 Plus
Caper-RL 69 CG11266-PL 1..55 17..71 275 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:18:16
Subject Length Description Subject Range Query Range Score Percent Strand
Caper-RB 2457 CG11266-RB 245..2029 17..1801 8925 100 Plus
Caper-RA 2128 CG11266-RA 181..1965 17..1801 8925 100 Plus
Caper-RL 2484 CG11266-RL 591..2321 71..1801 8655 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:18:11
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7036811..7037450 1162..1801 3200 100 Plus
2L 23513712 2L 7036185..7036722 625..1162 2690 100 Plus
2L 23513712 2L 7035636..7036035 225..624 2000 100 Plus
2L 23513712 2L 7035407..7035562 71..226 780 100 Plus
2L 23513712 2L 7032965..7033018 17..70 270 100 Plus
Blast to na_te.dros performed 2014-11-28 00:18:13
Subject Length Description Subject Range Query Range Score Percent Strand
R1A1-element 5356 R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). 668..714 120..74 118 72.3 Minus

BS08483.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:09:22 Download gff for BS08483.complete
Subject Subject Range Query Range Percent Splice Strand
CG11266-RB 1..1785 17..1801 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:34:47 Download gff for BS08483.complete
Subject Subject Range Query Range Percent Splice Strand
CG11266-RD 189..241 17..69 100 <- Plus
CG11266-RD 669..2403 70..1800 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:49:34 Download gff for BS08483.complete
Subject Subject Range Query Range Percent Splice Strand
CG11266-RA 181..1964 17..1800 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:09:22 Download gff for BS08483.complete
Subject Subject Range Query Range Percent Splice Strand
CG11266-RD 183..241 12..69 96 <- Plus
CG11266-RD 669..2407 70..1806 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:18:01 Download gff for BS08483.complete
Subject Subject Range Query Range Percent Splice Strand
Caper-RA 181..1964 17..1800 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:18:01 Download gff for BS08483.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7032965..7033018 17..70 100 -> Plus
2L 7035407..7035561 71..225 100 -> Plus
2L 7035637..7036035 226..624 100 -> Plus
2L 7036185..7036722 625..1162 100 -> Plus
2L 7036812..7037449 1163..1800 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:49:34 Download gff for BS08483.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7032965..7033018 17..70 100 -> Plus
arm_2L 7035407..7035561 71..225 100 -> Plus
arm_2L 7035637..7036035 226..624 100 -> Plus
arm_2L 7036185..7036722 625..1162 100 -> Plus
arm_2L 7036812..7037449 1163..1800 100   Plus

BS08483.pep Sequence

Translation from 16 to 1800

> BS08483.pep
MAEDFDVEAMLEAPYMKNNVSAGSGGSGGRKRSGSSPGGGGGHDDDYAEN
GPRNGSGGGSSHKKQSKRSRSRSGSRDGKSRRDRGNERSSHRDKDKERDR
NRDGGDRDRHRREGGDRDRERERERERDRSRRSRSRDERGGGGRYGDRDK
DRRSRDRRGGSKSLQVDRSRDKRRRSRSRDQQRKRLSPIRERKRSHSRSR
DRNSRRRGTNSPRRRSPPNGADRTTPTELSPEERDARTVFCIQLSQRVRA
RDLEEFFSSVGKVRDVRLITCNKTKRFKGIAYIEFDDPESVALALGLSGQ
RLLGVPIMVQHTQAEKNRLQNAAPAFQPKSHTGPMRLYVGSLHFNITEDM
LRGIFEPFGKIDAIQLIMDTETGRSKGYGFITYHNADDAKKALEQLNGFE
LAGRLMKVGNVTERLDMNTTSLDTDEMDRTGIDLGATGRLQLMFKLAEGA
GLAVPQAAANALLATAPQPAPLQQQEVAPSIATQCFILSNMFDPRTETNP
TWDVEIRDDVLEECAKHGGVLHIHVDTISHTGTVYVKCPSTTTAVLAVNA
LHGRWFAGRVITAAYVPVINYHTMFPDSINAVDLVTSTRKNTDD*

BS08483.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:38:51
Subject Length Description Subject Range Query Range Score Percent Strand
Caper-PB 594 CG11266-PB 1..594 1..594 3088 100 Plus
Caper-PA 594 CG11266-PA 1..594 1..594 3088 100 Plus
RnpS1-PA 374 CG16788-PA 23..302 30..318 265 30 Plus
SF1-PC 323 CG5836-PC 27..197 56..235 244 37.5 Plus
SF1-PB 347 CG5836-PB 27..197 56..235 244 37.5 Plus
SF1-PC 323 CG5836-PC 25..217 35..233 225 33.7 Plus