Clone Sequence Records
BS08486.3prime Sequence
868 bp (808 high quality bases) assembled on 2006-01-10
> BS08486.3prime
ATGGTCTAGAAAGCTTTTAGGAATCTGCTGTTGTCTTGTTTTTGAGCTGA
CGGTATAGCTGAACCATTTTGCTGCGCTCGGTTTCAAGCATTGACCTCGT
AGCCAAGGGCAGATCTTTCCGCTTGCCCTTCATCTGGGCCTTGGTGGGTG
CTTTGAAGGCGCTCTTAGATTGGGCAGCCAGCTTTAGTCGACTGCTGTCG
TCGTCCTCCGGCCCACGATTTGACTGACCCTGGTCGGGATTCAGCATGGA
CTTTAGAAGGAGATTGGCTTTGCGTCCTGGACGCGGCACGGTTTCACTTT
TTTCCGCTTTGCGCGGCAGGATTTTGAGGGAAGGTGGGGCATGGACGATC
TCACCAAATGCCACAGCATCCTGTTTGAATTCTGTTGGCCCGGCATTCTG
CTTCTCCTCGGTATCAACCTCTTGCTGGGCCTCCTTGTAGGCCCTCTTCA
CCAATTCGCGACTGGTCTTCGCATCCATGGGCTTGTGTACGACTTGAACC
TTTTTGCGACCCCTTTTGCCCGCCAGCCGTTGCTCCTTTTGCTTCTGCTT
GAGCAGCTCGTCGATCTCGTTTTTCGGCCTCTTTTGGACAGTAATCTCCC
CGGTTTTGGGGTTTCTGATCACGTTCACACCATACTTGGCCTCGTAGTGG
GCTTCCCGTACGGATGCATTGGTCATGCGATTCACTCGGCGCAGATAATC
CTCGTCCGTTTCGTTGGCGAACTGCTTGATGTTACGCGTTTCCTTTGAGG
AGGAACTACTGCCAGGCTTGGATCCTGGAGAGGATTTGGGCTTATCCTCC
CGTCCAATTTCGCCCAATCTTAGCTTCTTGCCCGATTTGGTGGCGTTGGC
AAGCTGCTGAAACTGACG
BS08486.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:07:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8326-PA | 999 | CG8326-RA | 148..999 | 868..17 | 4260 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:42:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8326-RA | 1260 | CG8326-RA | 217..1080 | 868..4 | 4270 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:42:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 17628356..17629207 | 17..868 | 4260 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:42:14 has no hits.
BS08486.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:42:03 Download gff for
BS08486.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8326-PA | 148..999 | 17..868 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:41:46 Download gff for
BS08486.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8326-PA | 148..999 | 17..868 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:32:58 Download gff for
BS08486.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8326-RA | 217..1081 | 1..868 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:48:57 Download gff for
BS08486.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8326-RA | 217..1081 | 1..868 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:48:57 Download gff for
BS08486.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 17628341..17629207 | 1..868 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:32:58 Download gff for
BS08486.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 17522374..17523240 | 1..868 | 99 | | Plus |
BS08486.5prime Sequence
888 bp (761 high quality bases) assembled on 2006-01-10
> BS08486.5prime
GAAGTTATCAGTCGACATGGCTCGGAAACGAAAGATTCCCGTGCGCAAGC
ACCACGGCGTCCGTGATCCCCTCAAGCAGCTGGAACAGAAGGAGAAGAAA
CTTTCCAAAGTAACGAACAATCCGCCTGTGAAAAAGGATGAGCAGCAGGT
GTCCTTTAAGTTCCGTCAGTTTCAGCAGCTTGCCAACGCCACCAAATCGG
GCAAGAAGCTAAGATTGGGCGAAATTGGACGGGAGGATAAGCCCAAATCC
TCTCCAGGATCCAAGCCTGGCAGTAGTTCCTCCTCAAAGGAAACGCGTAA
CATCAAGCAGTTCGCCAACGAAACGGACGAGGATTATCTGCGCCGAGTGA
ATCGCATGACCAATGCATCCGTACGGGAAGCCCACTACGAGGCCAAGTAT
GGTGTGAACGTGATCAGAAACCCCAAAACCGGGGAGATTACTGTCCAAAA
GAGGCCGAAAAACGAGATCGACGAGCTGCTCAAGCAGAAGCAAAAGGAGC
AACGGCTGGCGGGCAAAAGGGGTCGCAAAAAGGTTCAAGTCGTACACAAG
CCCATGGATGCGAAGACCAGTCGCGAATTGGTGAAGAGGGCCTACAAGGA
GGCCCAGCAAGAGGTTGATACCGAGGAGAAGCAGAATGCCGGGCCAACAG
AATTCAAACAGGATGCTGTGGCATTTGGTGAGATCGTCCATGCCCCACCT
TCCCTCAAAATCCTGCCGCGCAAAGCGGAAAAAAGTGAAACCGTGCCGCG
TCCAGGACGCAAAGCCAATCTCCTTCTAAAGTCCATGCTGAATCCCGACC
AGGGTCAGTCAAATCGTGGGCCGGAGGACGACGACAGCAGTCGACTAAAG
CTGGCTGCCCAATCTAAGAGCGCCTTCAAAGCACCCAC
BS08486.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:07:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8326-PA | 999 | CG8326-RA | 1..872 | 17..888 | 4360 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:51:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8326-RA | 1260 | CG8326-RA | 70..941 | 17..888 | 4360 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:51:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 17628483..17629271 | 888..100 | 3945 | 100 | Minus |
| X | 23542271 | X | 17629341..17629423 | 99..17 | 415 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:51:19 has no hits.
BS08486.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:42:04 Download gff for
BS08486.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8326-PA | 1..872 | 17..888 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:41:48 Download gff for
BS08486.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8326-PA | 1..872 | 17..888 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:28:52 Download gff for
BS08486.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8326-RA | 70..941 | 17..888 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:55:13 Download gff for
BS08486.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8326-RA | 70..941 | 17..888 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:55:13 Download gff for
BS08486.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 17628483..17629271 | 100..888 | 100 | <- | Minus |
| X | 17629341..17629423 | 17..99 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:28:52 Download gff for
BS08486.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 17522516..17523304 | 100..888 | 100 | <- | Minus |
| arm_X | 17523374..17523456 | 17..99 | 100 | | Minus |
BS08486.complete Sequence
1031 bp (1031 high quality bases) assembled on 2006-01-18
GenBank Submission: FJ636180
> BS08486.complete
GAAGTTATCAGTCGACATGGCTCGGAAACGAAAGATTCCCGTGCGCAAGC
ACCACGGCGTCCGTGATCCCCTCAAGCAGCTGGAACAGAAGGAGAAGAAA
CTTTCCAAAGTAACGAACAATCCGCCTGTGAAAAAGGATGAGCAGCAGGT
GTCCTTTAAGTTCCGTCAGTTTCAGCAGCTTGCCAACGCCACCAAATCGG
GCAAGAAGCTAAGATTGGGCGAAATTGGACGGGAGGATAAGCCCAAATCC
TCTCCAGGATCCAAGCCTGGCAGTAGTTCCTCCTCAAAGGAAACGCGTAA
CATCAAGCAGTTCGCCAACGAAACGGACGAGGATTATCTGCGCCGAGTGA
ATCGCATGACCAATGCATCCGTACGGGAAGCCCACTACGAGGCCAAGTAT
GGTGTGAACGTGATCAGAAACCCCAAAACCGGGGAGATTACTGTCCAAAA
GAGGCCGAAAAACGAGATCGACGAGCTGCTCAAGCAGAAGCAAAAGGAGC
AACGGCTGGCGGGCAAAAGGGGTCGCAAAAAGGTTCAAGTCGTACACAAG
CCCATGGATGCGAAGACCAGTCGCGAATTGGTGAAGAGGGCCTACAAGGA
GGCCCAGCAAGAGGTTGATACCGAGGAGAAGCAGAATGCCGGGCCAACAG
AATTCAAACAGGATGCTGTGGCATTTGGTGAGATCGTCCATGCCCCACCT
TCCCTCAAAATCCTGCCGCGCAAAGCGGAAAAAAGTGAAACCGTGCCGCG
TCCAGGACGCAAAGCCAATCTCCTTCTAAAGTCCATGCTGAATCCCGACC
AGGGTCAGTCAAATCGTGGGCCGGAGGACGACGACAGCAGTCGACTAAAG
CTGGCTGCCCAATCTAAGAGCGCCTTCAAAGCACCCACCAAGGCCCAGAT
GAAGGGCAAGCGGAAAGATCTGCCCTTGGCTACGAGGTCAATGCTTGAAA
CCGAGCGCAGCAAAATGGTTCAGCTATACCGTCAGCTCAAAAACAAGACA
ACAGCAGATTCCTAAAAGCTTTCTAGACCAT
BS08486.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:38:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8326-RA | 999 | CG8326-PA | 1..999 | 17..1015 | 4995 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:38:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8326-RA | 1260 | CG8326-RA | 70..1068 | 17..1015 | 4995 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:38:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 17628356..17629271 | 1015..100 | 4580 | 100 | Minus |
| X | 23542271 | X | 17629341..17629423 | 99..17 | 415 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:38:42 has no hits.
BS08486.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:48:36 Download gff for
BS08486.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8326-RA | 1..999 | 17..1015 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:36:45 Download gff for
BS08486.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8326-RA | 54..1065 | 17..1031 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:40:31 Download gff for
BS08486.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8326-RA | 70..1066 | 17..1013 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:48:36 Download gff for
BS08486.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8326-RA | 54..1065 | 17..1031 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:27:12 Download gff for
BS08486.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8326-RA | 70..1066 | 17..1013 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:27:12 Download gff for
BS08486.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 17628358..17629271 | 100..1013 | 100 | <- | Minus |
| X | 17629341..17629423 | 17..99 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:40:31 Download gff for
BS08486.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 17522391..17523304 | 100..1013 | 100 | <- | Minus |
| arm_X | 17523374..17523456 | 17..99 | 100 | | Minus |
BS08486.pep Sequence
Translation from 16 to 1014
> BS08486.pep
MARKRKIPVRKHHGVRDPLKQLEQKEKKLSKVTNNPPVKKDEQQVSFKFR
QFQQLANATKSGKKLRLGEIGREDKPKSSPGSKPGSSSSSKETRNIKQFA
NETDEDYLRRVNRMTNASVREAHYEAKYGVNVIRNPKTGEITVQKRPKNE
IDELLKQKQKEQRLAGKRGRKKVQVVHKPMDAKTSRELVKRAYKEAQQEV
DTEEKQNAGPTEFKQDAVAFGEIVHAPPSLKILPRKAEKSETVPRPGRKA
NLLLKSMLNPDQGQSNRGPEDDDSSRLKLAAQSKSAFKAPTKAQMKGKRK
DLPLATRSMLETERSKMVQLYRQLKNKTTADS*
BS08486.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:32:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8326-PA | 332 | CG8326-PA | 1..332 | 1..332 | 1679 | 100 | Plus |
