Clone Sequence Records
BS08488.3prime Sequence
555 bp (554 high quality bases) assembled on 2006-01-10
> BS08488.3prime
ATGGTCTAGAAAGCTTCTACTGACTGGCGGCTTTGTCATTTGGCTCCTCG
GCGGACTTCTTTGCCGGCTCGCCAGTCTGCTCGATGGTCACCTCACGCTC
CTTGAGTGTCTCCTGCACGCCTGGAGGATTGGGCACACTGATGGTCAGGA
CGCCGTCGCTGCTCAGCGTTGAGGTCACCTTGTCCGCCTCGTATCCTTCC
GGCAGGACGAAGCGGCGGAGGAAGTGCCTGGAGCTATAGCCACCTTGTTC
GGCCTCCTGCTGCTCTGATTTTCCCTCCACCAGGACAACGCTCTCGTCCA
GCACCTTGACCTTTAGCTCGCTGTAGTCCTTGACGTCCAGGGTGAGTTTG
TAGCCATCCTTGTTGACGGTGGCCGGCGGAGCGAACTCCTGCTCCTGCCA
GCGGGCAATCTGCTGCCAGTTCCTCGGTAGCGCCACACTCCAAACGGGCG
GCTCGTGGAAGAAGGCGTGAAAGGGCGAGGAGAGGCGTGGCATCCGTGCC
ATCTCCTCGGCCATGCGCCAAAACATCGGTAAGGAACGCATGTCGACTGA
TAACT
BS08488.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:08:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4460-PA | 525 | Hsp22-RA | 1..525 | 541..17 | 2625 | 100 | Minus |
CG4460-PB | 525 | Hsp22-RB | 1..525 | 541..17 | 2625 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:31:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hsp67Bb-RB | 1900 | CG4456-RB | 1187..1713 | 541..15 | 2635 | 100 | Minus |
Hsp22-RB | 968 | CG4460-RB | 255..781 | 541..15 | 2635 | 100 | Minus |
Hsp22-RA | 1900 | CG4460-RA | 1187..1713 | 541..15 | 2635 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 09:31:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9374251..9374777 | 541..15 | 2635 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-03 09:31:30 has no hits.
BS08488.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:42:05 Download gff for
BS08488.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4460-PB | 1..525 | 17..541 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:41:49 Download gff for
BS08488.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4460-PB | 1..525 | 17..541 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:47:12 Download gff for
BS08488.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hsp67Bb-RB | 1187..1713 | 15..541 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 10:01:10 Download gff for
BS08488.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hsp22-RA | 1187..1713 | 15..541 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 10:01:10 Download gff for
BS08488.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9374251..9374777 | 15..541 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:47:12 Download gff for
BS08488.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9367351..9367877 | 15..541 | 100 | | Minus |
BS08488.5prime Sequence
555 bp (554 high quality bases) assembled on 2006-01-10
> BS08488.5prime
GAAGTTATCAGTCGACATGCGTTCCTTACCGATGTTTTGGCGCATGGCCG
AGGAGATGGCACGGATGCCACGCCTCTCCTCGCCCTTTCACGCCTTCTTC
CACGAGCCGCCCGTTTGGAGTGTGGCGCTACCGAGGAACTGGCAGCAGAT
TGCCCGCTGGCAGGAGCAGGAGTTCGCTCCGCCGGCCACCGTCAACAAGG
ATGGCTACAAACTCACCCTGGACGTCAAGGACTACAGCGAGCTAAAGGTC
AAGGTGCTGGACGAGAGCGTTGTCCTGGTGGAGGGAAAATCAGAGCAGCA
GGAGGCCGAACAAGGTGGCTATAGCTCCAGGCACTTCCTCCGCCGCTTCG
TCCTGCCGGAAGGATACGAGGCGGACAAGGTGACCTCAACGCTGAGCAGC
GACGGCGTCCTGACCATCAGTGTGCCCAATCCTCCAGGCGTGCAGGAGAC
ACTCAAGGAGCGTGAGGTGACCATCGAGCAGACTGGCGAGCCGGCAAAGA
AGTCCGCCGAGGAGCCAAATGACAAAGCCGCCAGTCAGTAGAAGCTTTCT
AGACC
BS08488.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:08:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4460-PA | 525 | Hsp22-RA | 1..525 | 17..541 | 2625 | 100 | Plus |
CG4460-PB | 525 | Hsp22-RB | 1..525 | 17..541 | 2625 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 10:31:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hsp67Bb-RB | 1900 | CG4456-RB | 1187..1713 | 17..543 | 2635 | 100 | Plus |
Hsp22-RB | 968 | CG4460-RB | 255..781 | 17..543 | 2635 | 100 | Plus |
Hsp22-RA | 1900 | CG4460-RA | 1187..1713 | 17..543 | 2635 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 10:31:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9374251..9374777 | 17..543 | 2635 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 10:31:26 has no hits.
BS08488.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:42:06 Download gff for
BS08488.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4460-PB | 1..525 | 17..541 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:41:51 Download gff for
BS08488.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4460-PB | 1..525 | 17..541 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 11:26:25 Download gff for
BS08488.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hsp67Bb-RB | 1187..1713 | 17..543 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 12:37:41 Download gff for
BS08488.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hsp22-RA | 1187..1713 | 17..543 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 12:37:41 Download gff for
BS08488.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9374251..9374777 | 17..543 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 11:26:25 Download gff for
BS08488.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9367351..9367877 | 17..543 | 100 | | Plus |
BS08488.complete Sequence
557 bp (557 high quality bases) assembled on 2006-01-18
GenBank Submission: FJ636181
> BS08488.complete
GAAGTTATCAGTCGACATGCGTTCCTTACCGATGTTTTGGCGCATGGCCG
AGGAGATGGCACGGATGCCACGCCTCTCCTCGCCCTTTCACGCCTTCTTC
CACGAGCCGCCCGTTTGGAGTGTGGCGCTACCGAGGAACTGGCAGCAGAT
TGCCCGCTGGCAGGAGCAGGAGTTCGCTCCGCCGGCCACCGTCAACAAGG
ATGGCTACAAACTCACCCTGGACGTCAAGGACTACAGCGAGCTAAAGGTC
AAGGTGCTGGACGAGAGCGTTGTCCTGGTGGAGGGAAAATCAGAGCAGCA
GGAGGCCGAACAAGGTGGCTATAGCTCCAGGCACTTCCTCCGCCGCTTCG
TCCTGCCGGAAGGATACGAGGCGGACAAGGTGACCTCAACGCTGAGCAGC
GACGGCGTCCTGACCATCAGTGTGCCCAATCCTCCAGGCGTGCAGGAGAC
ACTCAAGGAGCGTGAGGTGACCATCGAGCAGACTGGCGAGCCGGCAAAGA
AGTCCGCCGAGGAGCCAAATGACAAAGCCGCCAGTCAGTAGAAGCTTTCT
AGACCAT
BS08488.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:42:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hsp22-RB | 525 | CG4460-PB | 1..525 | 17..541 | 2625 | 100 | Plus |
Hsp22-RA | 525 | CG4460-PA | 1..525 | 17..541 | 2625 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:42:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hsp67Bb-RB | 1900 | CG4456-RB | 1187..1713 | 17..543 | 2635 | 100 | Plus |
Hsp22-RB | 968 | CG4460-RB | 255..781 | 17..543 | 2635 | 100 | Plus |
Hsp22-RA | 1900 | CG4460-RA | 1187..1713 | 17..543 | 2635 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:42:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9374251..9374777 | 17..543 | 2635 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 23:42:50 has no hits.
BS08488.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:03:09 Download gff for
BS08488.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hsp22-RB | 1..525 | 17..541 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:56:17 Download gff for
BS08488.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hsp67Bb-RB | 1187..1713 | 17..543 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:36:06 Download gff for
BS08488.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hsp67Bb-RB | 1187..1711 | 17..541 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:03:09 Download gff for
BS08488.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hsp67Bb-RB | 1187..1713 | 17..543 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:06:44 Download gff for
BS08488.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hsp22-RA | 1187..1711 | 17..541 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:06:44 Download gff for
BS08488.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9374251..9374775 | 17..541 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:36:06 Download gff for
BS08488.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9367351..9367875 | 17..541 | 100 | | Plus |
BS08488.pep Sequence
Translation from 16 to 540
> BS08488.pep
MRSLPMFWRMAEEMARMPRLSSPFHAFFHEPPVWSVALPRNWQQIARWQE
QEFAPPATVNKDGYKLTLDVKDYSELKVKVLDESVVLVEGKSEQQEAEQG
GYSSRHFLRRFVLPEGYEADKVTSTLSSDGVLTISVPNPPGVQETLKERE
VTIEQTGEPAKKSAEEPNDKAASQ*
BS08488.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:21:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hsp22-PB | 174 | CG4460-PB | 1..174 | 1..174 | 906 | 100 | Plus |
Hsp22-PA | 174 | CG4460-PA | 1..174 | 1..174 | 906 | 100 | Plus |
Hsp23-PB | 186 | CG4463-PB | 1..180 | 1..174 | 287 | 39.7 | Plus |
Hsp23-PA | 186 | CG4463-PA | 1..180 | 1..174 | 287 | 39.7 | Plus |
Hsp26-PB | 208 | CG4183-PB | 68..182 | 43..157 | 251 | 44.4 | Plus |