Clone BS08488 Report

Search the DGRC for BS08488

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:84
Well:88
Vector:pDNR-Dual
Associated Gene/TranscriptHsp22-RA
Protein status:BS08488.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08488.3prime Sequence

555 bp (554 high quality bases) assembled on 2006-01-10

> BS08488.3prime
ATGGTCTAGAAAGCTTCTACTGACTGGCGGCTTTGTCATTTGGCTCCTCG
GCGGACTTCTTTGCCGGCTCGCCAGTCTGCTCGATGGTCACCTCACGCTC
CTTGAGTGTCTCCTGCACGCCTGGAGGATTGGGCACACTGATGGTCAGGA
CGCCGTCGCTGCTCAGCGTTGAGGTCACCTTGTCCGCCTCGTATCCTTCC
GGCAGGACGAAGCGGCGGAGGAAGTGCCTGGAGCTATAGCCACCTTGTTC
GGCCTCCTGCTGCTCTGATTTTCCCTCCACCAGGACAACGCTCTCGTCCA
GCACCTTGACCTTTAGCTCGCTGTAGTCCTTGACGTCCAGGGTGAGTTTG
TAGCCATCCTTGTTGACGGTGGCCGGCGGAGCGAACTCCTGCTCCTGCCA
GCGGGCAATCTGCTGCCAGTTCCTCGGTAGCGCCACACTCCAAACGGGCG
GCTCGTGGAAGAAGGCGTGAAAGGGCGAGGAGAGGCGTGGCATCCGTGCC
ATCTCCTCGGCCATGCGCCAAAACATCGGTAAGGAACGCATGTCGACTGA
TAACT

BS08488.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:08:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG4460-PA 525 Hsp22-RA 1..525 541..17 2625 100 Minus
CG4460-PB 525 Hsp22-RB 1..525 541..17 2625 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:31:35
Subject Length Description Subject Range Query Range Score Percent Strand
Hsp67Bb-RB 1900 CG4456-RB 1187..1713 541..15 2635 100 Minus
Hsp22-RB 968 CG4460-RB 255..781 541..15 2635 100 Minus
Hsp22-RA 1900 CG4460-RA 1187..1713 541..15 2635 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 09:31:26
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9374251..9374777 541..15 2635 100 Minus
Blast to na_te.dros performed on 2015-02-03 09:31:30 has no hits.

BS08488.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:42:05 Download gff for BS08488.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4460-PB 1..525 17..541 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:41:49 Download gff for BS08488.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4460-PB 1..525 17..541 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:47:12 Download gff for BS08488.3prime
Subject Subject Range Query Range Percent Splice Strand
Hsp67Bb-RB 1187..1713 15..541 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 10:01:10 Download gff for BS08488.3prime
Subject Subject Range Query Range Percent Splice Strand
Hsp22-RA 1187..1713 15..541 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 10:01:10 Download gff for BS08488.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 9374251..9374777 15..541 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:47:12 Download gff for BS08488.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9367351..9367877 15..541 100   Minus

BS08488.5prime Sequence

555 bp (554 high quality bases) assembled on 2006-01-10

> BS08488.5prime
GAAGTTATCAGTCGACATGCGTTCCTTACCGATGTTTTGGCGCATGGCCG
AGGAGATGGCACGGATGCCACGCCTCTCCTCGCCCTTTCACGCCTTCTTC
CACGAGCCGCCCGTTTGGAGTGTGGCGCTACCGAGGAACTGGCAGCAGAT
TGCCCGCTGGCAGGAGCAGGAGTTCGCTCCGCCGGCCACCGTCAACAAGG
ATGGCTACAAACTCACCCTGGACGTCAAGGACTACAGCGAGCTAAAGGTC
AAGGTGCTGGACGAGAGCGTTGTCCTGGTGGAGGGAAAATCAGAGCAGCA
GGAGGCCGAACAAGGTGGCTATAGCTCCAGGCACTTCCTCCGCCGCTTCG
TCCTGCCGGAAGGATACGAGGCGGACAAGGTGACCTCAACGCTGAGCAGC
GACGGCGTCCTGACCATCAGTGTGCCCAATCCTCCAGGCGTGCAGGAGAC
ACTCAAGGAGCGTGAGGTGACCATCGAGCAGACTGGCGAGCCGGCAAAGA
AGTCCGCCGAGGAGCCAAATGACAAAGCCGCCAGTCAGTAGAAGCTTTCT
AGACC

BS08488.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:08:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG4460-PA 525 Hsp22-RA 1..525 17..541 2625 100 Plus
CG4460-PB 525 Hsp22-RB 1..525 17..541 2625 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 10:31:31
Subject Length Description Subject Range Query Range Score Percent Strand
Hsp67Bb-RB 1900 CG4456-RB 1187..1713 17..543 2635 100 Plus
Hsp22-RB 968 CG4460-RB 255..781 17..543 2635 100 Plus
Hsp22-RA 1900 CG4460-RA 1187..1713 17..543 2635 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 10:31:22
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9374251..9374777 17..543 2635 100 Plus
Blast to na_te.dros performed on 2015-02-04 10:31:26 has no hits.

BS08488.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:42:06 Download gff for BS08488.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4460-PB 1..525 17..541 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:41:51 Download gff for BS08488.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4460-PB 1..525 17..541 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 11:26:25 Download gff for BS08488.5prime
Subject Subject Range Query Range Percent Splice Strand
Hsp67Bb-RB 1187..1713 17..543 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 12:37:41 Download gff for BS08488.5prime
Subject Subject Range Query Range Percent Splice Strand
Hsp22-RA 1187..1713 17..543 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 12:37:41 Download gff for BS08488.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 9374251..9374777 17..543 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 11:26:25 Download gff for BS08488.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9367351..9367877 17..543 100   Plus

BS08488.complete Sequence

557 bp (557 high quality bases) assembled on 2006-01-18

GenBank Submission: FJ636181

> BS08488.complete
GAAGTTATCAGTCGACATGCGTTCCTTACCGATGTTTTGGCGCATGGCCG
AGGAGATGGCACGGATGCCACGCCTCTCCTCGCCCTTTCACGCCTTCTTC
CACGAGCCGCCCGTTTGGAGTGTGGCGCTACCGAGGAACTGGCAGCAGAT
TGCCCGCTGGCAGGAGCAGGAGTTCGCTCCGCCGGCCACCGTCAACAAGG
ATGGCTACAAACTCACCCTGGACGTCAAGGACTACAGCGAGCTAAAGGTC
AAGGTGCTGGACGAGAGCGTTGTCCTGGTGGAGGGAAAATCAGAGCAGCA
GGAGGCCGAACAAGGTGGCTATAGCTCCAGGCACTTCCTCCGCCGCTTCG
TCCTGCCGGAAGGATACGAGGCGGACAAGGTGACCTCAACGCTGAGCAGC
GACGGCGTCCTGACCATCAGTGTGCCCAATCCTCCAGGCGTGCAGGAGAC
ACTCAAGGAGCGTGAGGTGACCATCGAGCAGACTGGCGAGCCGGCAAAGA
AGTCCGCCGAGGAGCCAAATGACAAAGCCGCCAGTCAGTAGAAGCTTTCT
AGACCAT

BS08488.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:42:51
Subject Length Description Subject Range Query Range Score Percent Strand
Hsp22-RB 525 CG4460-PB 1..525 17..541 2625 100 Plus
Hsp22-RA 525 CG4460-PA 1..525 17..541 2625 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:42:52
Subject Length Description Subject Range Query Range Score Percent Strand
Hsp67Bb-RB 1900 CG4456-RB 1187..1713 17..543 2635 100 Plus
Hsp22-RB 968 CG4460-RB 255..781 17..543 2635 100 Plus
Hsp22-RA 1900 CG4460-RA 1187..1713 17..543 2635 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:42:49
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9374251..9374777 17..543 2635 100 Plus
Blast to na_te.dros performed on 2014-11-27 23:42:50 has no hits.

BS08488.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:03:09 Download gff for BS08488.complete
Subject Subject Range Query Range Percent Splice Strand
Hsp22-RB 1..525 17..541 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:56:17 Download gff for BS08488.complete
Subject Subject Range Query Range Percent Splice Strand
Hsp67Bb-RB 1187..1713 17..543 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:36:06 Download gff for BS08488.complete
Subject Subject Range Query Range Percent Splice Strand
Hsp67Bb-RB 1187..1711 17..541 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:03:09 Download gff for BS08488.complete
Subject Subject Range Query Range Percent Splice Strand
Hsp67Bb-RB 1187..1713 17..543 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:06:44 Download gff for BS08488.complete
Subject Subject Range Query Range Percent Splice Strand
Hsp22-RA 1187..1711 17..541 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:06:44 Download gff for BS08488.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9374251..9374775 17..541 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:36:06 Download gff for BS08488.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9367351..9367875 17..541 100   Plus

BS08488.pep Sequence

Translation from 16 to 540

> BS08488.pep
MRSLPMFWRMAEEMARMPRLSSPFHAFFHEPPVWSVALPRNWQQIARWQE
QEFAPPATVNKDGYKLTLDVKDYSELKVKVLDESVVLVEGKSEQQEAEQG
GYSSRHFLRRFVLPEGYEADKVTSTLSSDGVLTISVPNPPGVQETLKERE
VTIEQTGEPAKKSAEEPNDKAASQ*

BS08488.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:21:29
Subject Length Description Subject Range Query Range Score Percent Strand
Hsp22-PB 174 CG4460-PB 1..174 1..174 906 100 Plus
Hsp22-PA 174 CG4460-PA 1..174 1..174 906 100 Plus
Hsp23-PB 186 CG4463-PB 1..180 1..174 287 39.7 Plus
Hsp23-PA 186 CG4463-PA 1..180 1..174 287 39.7 Plus
Hsp26-PB 208 CG4183-PB 68..182 43..157 251 44.4 Plus