Clone Sequence Records
BS08492.3prime Sequence
908 bp (824 high quality bases) assembled on 2006-01-10
> BS08492.3prime
ATGGTCTAGAAAGCTTTTAACTCTCCTCCTTGCTGGGACTGTCTTTCCCC
AAGAACTCTGTGTCATTGGAATTGCTGAAGTGGCTCCTGGCAGCTGCAAC
TGACTTTGGTGGGATGTTGAACAGTGGGTGGGTAGGCAGTAGCTCGTTAA
TGGTGTCGCCCAGGACCTGGGGGCTGCTGGCGCACTCCGAGTGCTGGGCA
ATGGAAACGCCACTAAGAGTATAGCATGTGTGGTAGAGATCCTGCGGTTT
TCCGGGTTTGTCGATAAGCCCGCCGCTCTGCTTTTGGCAGCAGAGCAGGA
TGTACTCCTGCAGGGCCTCCACATCGAAAAGGGTGTGCTCCATTTGCTTA
TCGACGCCGGATAGCGTTGCCTGCGTAATGGGAATGGTGGCTCCCACCCA
GAAGGAGTAGCAGCCATCAACCAGTTTGTTGGTCCTCCCTTGGAAGCCGC
CTTCGTAGGTCATCTGACGGCGCAGTGTCCATTTGAGCAAAGCCTGCCTG
TCGCACTTATCAGCCTCGTTGAGCAGCGCCAGGCCCGCGATTCCGCAGAA
GGTGTAGCCACCATGGGCCTCCAGACCAGGGGCTCCTCCAAATCCTCCCT
CGTATGTCTGACACTGGGCTATCCAGTCGCCAGTGCCGGCAAATAGCTCC
TTGATCACTGGCTCGGGAAGATTTAGCAGCTTTGCGCAGGAGATTGCGCA
GTAGGCGCCACGCACATCCGTCTCACCATCCACGTGGAGCCGGAAGGAGC
CGTCTGAGTCACGTACACTGAACAGGAACTGGACCAAAGTCGGTCGGTCT
ATGGCACGGTACGCCTGCTCGCTTCCGATGATGCACAGACTGTTCACTGC
TGCATAGGTGGGCGCCAGATGGGCATACTGTCCAGGTCCTCCTCCAAAAC
CCCAGTCG
BS08492.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:08:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17565-PA | 1260 | CG17565-RA | 374..1260 | 903..17 | 4435 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:10:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17565-RA | 1569 | CG17565-RA | 453..1345 | 908..17 | 4440 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:10:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16433574..16434228 | 903..249 | 3275 | 100 | Minus |
3R | 32079331 | 3R | 16434285..16434516 | 248..17 | 1160 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 03:10:10 has no hits.
BS08492.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:42:09 Download gff for
BS08492.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17565-PA | 368..1260 | 17..908 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:41:56 Download gff for
BS08492.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17565-PA | 368..1260 | 17..908 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:25:09 Download gff for
BS08492.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17565-RA | 453..1353 | 6..908 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:26:50 Download gff for
BS08492.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17565-RA | 453..1353 | 6..908 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:26:50 Download gff for
BS08492.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16434285..16434524 | 6..248 | 98 | | Minus |
3R | 16433568..16434228 | 249..908 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:25:09 Download gff for
BS08492.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12259290..12259950 | 249..908 | 99 | -> | Minus |
arm_3R | 12260007..12260246 | 6..248 | 98 | | Minus |
BS08492.5prime Sequence
953 bp (795 high quality bases) assembled on 2006-01-10
> BS08492.5prime
GAAGTTATCAGTCGACATGGGAACCGAGGAGGAGCTGATGTTCCGCAACT
TCCAGCGCCTGAAAAGCTACATCTTCGACGACGAGAAGGTGTCCACCACC
ACATCCCGCGAGCAACAAAAGACGGAGAGTTCGGTGGAGAAATGCTTCGA
CCGCTTCGAGCAGATAATGTTCACCGACCCGCGCCTCACCCAGATCTTCC
GGCTGGAGCACCAGTACTACCTGGACGCGATGCTGAGGCGGCTGCCGTCC
AATTACGAGTGCCTGGACAGCAGTCGCGCGTGGTGCGTTTACTGGATCCT
GCAGGCGGCCCAGCTACTTAGCTTTAACTTCGACGACCAGACATTGAACC
ACGTGGTCCAGTTTCTAAGCAACTGCCGTTCGCCGACTGGGGGTTTTGGA
GGAGGACCTGGACAGTATGCCCATCTGGCGCCCACCTATGCAGCAGTGAA
CAGTCTGTGCATCATCGGAAGCGAGCAGGCGTACCGTGCCATAGACCGAC
CGACTTTGGTCCAGTTCCTGTTCAGTGTACGTGACTCAGACGGCTCCTTC
CGGCTCCACGTGGATGGTGAGACGGATGTGCGTGGCGCCTACTGCGCAAT
CTCCTGCGCAAAGCTGCTAAATCTTCCCGAGCCAGTGATCAAGGAGCTAT
TTGCCGGCACTGGCGACTGGATAGCCCAGTGTCAGACATACGAGGGAGGA
TTTGGAGGAGCCCCTGGTCTGGAGGCCCATGGTGGCTACACCTTCTGCGG
AATCGCGGGCCTGGCGCTGCTCAACGAGGCTGATAAGTGCGACAGGCAGG
CTTTGCTCAAATGGACACTGCGCCGTCAGATGACCTACGAAGGCGGCTTC
CAAGGGAGGACCAACAAACTGGTTGATGGCTGCTACTCCTTCTGGGTGGG
AGCCACCATTCCCATTACGCAGGCAACGCTATCCGGCGTCGATAAGCAAA
TGG
BS08492.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:08:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17565-PA | 1260 | CG17565-RA | 1..937 | 17..953 | 4685 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 02:54:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17565-RA | 1569 | CG17565-RA | 79..1022 | 10..953 | 4690 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 02:54:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16433557..16434137 | 373..953 | 2905 | 100 | Plus |
3R | 32079331 | 3R | 16433234..16433498 | 112..376 | 1295 | 99.2 | Plus |
3R | 32079331 | 3R | 16433076..16433181 | 10..115 | 500 | 98.1 | Plus |
Blast to na_te.dros performed on 2015-02-10 02:54:50 has no hits.
BS08492.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:42:10 Download gff for
BS08492.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17565-PA | 1..937 | 17..953 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:41:58 Download gff for
BS08492.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17565-PA | 1..937 | 17..953 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:41:14 Download gff for
BS08492.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17565-RA | 79..1022 | 10..953 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:11:59 Download gff for
BS08492.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17565-RA | 79..1022 | 10..953 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:11:59 Download gff for
BS08492.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16433076..16433181 | 10..115 | 98 | -> | Plus |
3R | 16433238..16433494 | 116..372 | 100 | -> | Plus |
3R | 16433557..16434137 | 373..953 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:41:14 Download gff for
BS08492.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12258798..12258903 | 10..115 | 98 | -> | Plus |
arm_3R | 12258960..12259216 | 116..372 | 100 | -> | Plus |
arm_3R | 12259279..12259859 | 373..953 | 100 | | Plus |
BS08492.complete Sequence
1292 bp (1292 high quality bases) assembled on 2006-01-18
GenBank Submission: FJ636182
> BS08492.complete
GAAGTTATCAGTCGACATGGGAACCGAGGAGGAGCTGATGTTCCGCAACT
TCCAGCGCCTGAAAAGCTACATCTTCGACGACGAGAAGGTGTCCACCACC
ACATCCCGCGAGCAACAAAAGACGGAGAGTTCGGTGGAGAAATGCTTCGA
CCGCTTCGAGCAGATAATGTTCACCGACCCGCGCCTCACCCAGATCTTCC
GGCTGGAGCACCAGTACTACCTGGACGCGATGCTGAGGCGGCTGCCGTCC
AATTACGAGTGCCTGGACAGCAGTCGCGCGTGGTGCGTTTACTGGATCCT
GCAGGCGGCCCAGCTACTTAGCTTTAACTTCGACGACCAGACATTGAACC
ACGTGGTCCAGTTTCTAAGCAACTGCCGTTCGCCGACTGGGGGTTTTGGA
GGAGGACCTGGACAGTATGCCCATCTGGCGCCCACCTATGCAGCAGTGAA
CAGTCTGTGCATCATCGGAAGCGAGCAGGCGTACCGTGCCATAGACCGAC
CGACTTTGGTCCAGTTCCTGTTCAGTGTACGTGACTCAGACGGCTCCTTC
CGGCTCCACGTGGATGGTGAGACGGATGTGCGTGGCGCCTACTGCGCAAT
CTCCTGCGCAAAGCTGCTAAATCTTCCCGAGCCAGTGATCAAGGAGCTAT
TTGCCGGCACTGGCGACTGGATAGCCCAGTGTCAGACATACGAGGGAGGA
TTTGGAGGAGCCCCTGGTCTGGAGGCCCATGGTGGCTACACCTTCTGCGG
AATCGCGGGCCTGGCGCTGCTCAACGAGGCTGATAAGTGCGACAGGCAGG
CTTTGCTCAAATGGACACTGCGCCGTCAGATGACCTACGAAGGCGGCTTC
CAAGGGAGGACCAACAAACTGGTTGATGGCTGCTACTCCTTCTGGGTGGG
AGCCACCATTCCCATTACGCAGGCAACGCTATCCGGCGTCGATAAGCAAA
TGGAGCACACCCTTTTCGATGTGGAGGCCCTGCAGGAGTACATCCTGCTC
TGCTGCCAAAAGCAGAGCGGCGGGCTTATCGACAAACCCGGAAAACCGCA
GGATCTCTACCACACATGCTATACTCTTAGTGGCGTTTCCATTGCCCAGC
ACTCGGAGTGCGCCAGCAGCCCCCAGGTCCTGGGCGACACCATTAACGAG
CTACTGCCTACCCACCCACTGTTCAACATCCCACCAAAGTCAGTTGCAGC
TGCCAGGAGCCACTTCAGCAATTCCAATGACACAGAGTTCTTGGGGAAAG
ACAGTCCCAGCAAGGAGGAGAGTTAAAAGCTTTCTAGACCAT
BS08492.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:18:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17565-RA | 1260 | CG17565-PA | 1..1260 | 17..1276 | 6300 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:18:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17565-RA | 1569 | CG17565-RA | 79..1345 | 10..1276 | 6305 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:18:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16433557..16434228 | 373..1044 | 3360 | 100 | Plus |
3R | 32079331 | 3R | 16433234..16433498 | 112..376 | 1295 | 99.2 | Plus |
3R | 32079331 | 3R | 16434285..16434516 | 1045..1276 | 1160 | 100 | Plus |
3R | 32079331 | 3R | 16433076..16433181 | 10..115 | 500 | 98.1 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:18:26 has no hits.
BS08492.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:02:58 Download gff for
BS08492.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17565-RA | 1..1260 | 17..1276 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:40:50 Download gff for
BS08492.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17565-RA | 96..1370 | 10..1287 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:25:49 Download gff for
BS08492.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17565-RA | 86..1343 | 17..1274 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:02:58 Download gff for
BS08492.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17565-RA | 96..1370 | 10..1287 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:15:27 Download gff for
BS08492.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17565-RA | 86..1343 | 17..1274 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:15:27 Download gff for
BS08492.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16433083..16433181 | 17..115 | 100 | -> | Plus |
3R | 16433238..16433494 | 116..372 | 100 | -> | Plus |
3R | 16433557..16434228 | 373..1044 | 100 | -> | Plus |
3R | 16434285..16434514 | 1045..1274 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:25:49 Download gff for
BS08492.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12258805..12258903 | 17..115 | 100 | -> | Plus |
arm_3R | 12258960..12259216 | 116..372 | 100 | -> | Plus |
arm_3R | 12259279..12259950 | 373..1044 | 100 | -> | Plus |
arm_3R | 12260007..12260236 | 1045..1274 | 100 | | Plus |
BS08492.pep Sequence
Translation from 16 to 1275
> BS08492.pep
MGTEEELMFRNFQRLKSYIFDDEKVSTTTSREQQKTESSVEKCFDRFEQI
MFTDPRLTQIFRLEHQYYLDAMLRRLPSNYECLDSSRAWCVYWILQAAQL
LSFNFDDQTLNHVVQFLSNCRSPTGGFGGGPGQYAHLAPTYAAVNSLCII
GSEQAYRAIDRPTLVQFLFSVRDSDGSFRLHVDGETDVRGAYCAISCAKL
LNLPEPVIKELFAGTGDWIAQCQTYEGGFGGAPGLEAHGGYTFCGIAGLA
LLNEADKCDRQALLKWTLRRQMTYEGGFQGRTNKLVDGCYSFWVGATIPI
TQATLSGVDKQMEHTLFDVEALQEYILLCCQKQSGGLIDKPGKPQDLYHT
CYTLSGVSIAQHSECASSPQVLGDTINELLPTHPLFNIPPKSVAAARSHF
SNSNDTEFLGKDSPSKEES*
BS08492.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:22:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17565-PA | 419 | CG17565-PA | 1..419 | 1..419 | 2237 | 100 | Plus |
betaggt-II-PA | 347 | CG18627-PA | 61..318 | 91..363 | 345 | 31.4 | Plus |
betaggt-I-PB | 376 | CG3469-PB | 109..320 | 133..358 | 279 | 34.8 | Plus |
betaggt-I-PA | 395 | CG3469-PA | 109..320 | 133..358 | 279 | 34.8 | Plus |