Clone BS08492 Report

Search the DGRC for BS08492

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:84
Well:92
Vector:pDNR-Dual
Associated Gene/TranscriptCG17565-RA
Protein status:BS08492.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08492.3prime Sequence

908 bp (824 high quality bases) assembled on 2006-01-10

> BS08492.3prime
ATGGTCTAGAAAGCTTTTAACTCTCCTCCTTGCTGGGACTGTCTTTCCCC
AAGAACTCTGTGTCATTGGAATTGCTGAAGTGGCTCCTGGCAGCTGCAAC
TGACTTTGGTGGGATGTTGAACAGTGGGTGGGTAGGCAGTAGCTCGTTAA
TGGTGTCGCCCAGGACCTGGGGGCTGCTGGCGCACTCCGAGTGCTGGGCA
ATGGAAACGCCACTAAGAGTATAGCATGTGTGGTAGAGATCCTGCGGTTT
TCCGGGTTTGTCGATAAGCCCGCCGCTCTGCTTTTGGCAGCAGAGCAGGA
TGTACTCCTGCAGGGCCTCCACATCGAAAAGGGTGTGCTCCATTTGCTTA
TCGACGCCGGATAGCGTTGCCTGCGTAATGGGAATGGTGGCTCCCACCCA
GAAGGAGTAGCAGCCATCAACCAGTTTGTTGGTCCTCCCTTGGAAGCCGC
CTTCGTAGGTCATCTGACGGCGCAGTGTCCATTTGAGCAAAGCCTGCCTG
TCGCACTTATCAGCCTCGTTGAGCAGCGCCAGGCCCGCGATTCCGCAGAA
GGTGTAGCCACCATGGGCCTCCAGACCAGGGGCTCCTCCAAATCCTCCCT
CGTATGTCTGACACTGGGCTATCCAGTCGCCAGTGCCGGCAAATAGCTCC
TTGATCACTGGCTCGGGAAGATTTAGCAGCTTTGCGCAGGAGATTGCGCA
GTAGGCGCCACGCACATCCGTCTCACCATCCACGTGGAGCCGGAAGGAGC
CGTCTGAGTCACGTACACTGAACAGGAACTGGACCAAAGTCGGTCGGTCT
ATGGCACGGTACGCCTGCTCGCTTCCGATGATGCACAGACTGTTCACTGC
TGCATAGGTGGGCGCCAGATGGGCATACTGTCCAGGTCCTCCTCCAAAAC
CCCAGTCG

BS08492.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:08:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG17565-PA 1260 CG17565-RA 374..1260 903..17 4435 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:10:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG17565-RA 1569 CG17565-RA 453..1345 908..17 4440 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:10:08
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16433574..16434228 903..249 3275 100 Minus
3R 32079331 3R 16434285..16434516 248..17 1160 100 Minus
Blast to na_te.dros performed on 2015-02-11 03:10:10 has no hits.

BS08492.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:42:09 Download gff for BS08492.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17565-PA 368..1260 17..908 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:41:56 Download gff for BS08492.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17565-PA 368..1260 17..908 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:25:09 Download gff for BS08492.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17565-RA 453..1353 6..908 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:26:50 Download gff for BS08492.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17565-RA 453..1353 6..908 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:26:50 Download gff for BS08492.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 16434285..16434524 6..248 98   Minus
3R 16433568..16434228 249..908 99 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:25:09 Download gff for BS08492.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12259290..12259950 249..908 99 -> Minus
arm_3R 12260007..12260246 6..248 98   Minus

BS08492.5prime Sequence

953 bp (795 high quality bases) assembled on 2006-01-10

> BS08492.5prime
GAAGTTATCAGTCGACATGGGAACCGAGGAGGAGCTGATGTTCCGCAACT
TCCAGCGCCTGAAAAGCTACATCTTCGACGACGAGAAGGTGTCCACCACC
ACATCCCGCGAGCAACAAAAGACGGAGAGTTCGGTGGAGAAATGCTTCGA
CCGCTTCGAGCAGATAATGTTCACCGACCCGCGCCTCACCCAGATCTTCC
GGCTGGAGCACCAGTACTACCTGGACGCGATGCTGAGGCGGCTGCCGTCC
AATTACGAGTGCCTGGACAGCAGTCGCGCGTGGTGCGTTTACTGGATCCT
GCAGGCGGCCCAGCTACTTAGCTTTAACTTCGACGACCAGACATTGAACC
ACGTGGTCCAGTTTCTAAGCAACTGCCGTTCGCCGACTGGGGGTTTTGGA
GGAGGACCTGGACAGTATGCCCATCTGGCGCCCACCTATGCAGCAGTGAA
CAGTCTGTGCATCATCGGAAGCGAGCAGGCGTACCGTGCCATAGACCGAC
CGACTTTGGTCCAGTTCCTGTTCAGTGTACGTGACTCAGACGGCTCCTTC
CGGCTCCACGTGGATGGTGAGACGGATGTGCGTGGCGCCTACTGCGCAAT
CTCCTGCGCAAAGCTGCTAAATCTTCCCGAGCCAGTGATCAAGGAGCTAT
TTGCCGGCACTGGCGACTGGATAGCCCAGTGTCAGACATACGAGGGAGGA
TTTGGAGGAGCCCCTGGTCTGGAGGCCCATGGTGGCTACACCTTCTGCGG
AATCGCGGGCCTGGCGCTGCTCAACGAGGCTGATAAGTGCGACAGGCAGG
CTTTGCTCAAATGGACACTGCGCCGTCAGATGACCTACGAAGGCGGCTTC
CAAGGGAGGACCAACAAACTGGTTGATGGCTGCTACTCCTTCTGGGTGGG
AGCCACCATTCCCATTACGCAGGCAACGCTATCCGGCGTCGATAAGCAAA
TGG

BS08492.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:08:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG17565-PA 1260 CG17565-RA 1..937 17..953 4685 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 02:54:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG17565-RA 1569 CG17565-RA 79..1022 10..953 4690 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 02:54:47
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16433557..16434137 373..953 2905 100 Plus
3R 32079331 3R 16433234..16433498 112..376 1295 99.2 Plus
3R 32079331 3R 16433076..16433181 10..115 500 98.1 Plus
Blast to na_te.dros performed on 2015-02-10 02:54:50 has no hits.

BS08492.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:42:10 Download gff for BS08492.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17565-PA 1..937 17..953 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:41:58 Download gff for BS08492.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17565-PA 1..937 17..953 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:41:14 Download gff for BS08492.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17565-RA 79..1022 10..953 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:11:59 Download gff for BS08492.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17565-RA 79..1022 10..953 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:11:59 Download gff for BS08492.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 16433076..16433181 10..115 98 -> Plus
3R 16433238..16433494 116..372 100 -> Plus
3R 16433557..16434137 373..953 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:41:14 Download gff for BS08492.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12258798..12258903 10..115 98 -> Plus
arm_3R 12258960..12259216 116..372 100 -> Plus
arm_3R 12259279..12259859 373..953 100   Plus

BS08492.complete Sequence

1292 bp (1292 high quality bases) assembled on 2006-01-18

GenBank Submission: FJ636182

> BS08492.complete
GAAGTTATCAGTCGACATGGGAACCGAGGAGGAGCTGATGTTCCGCAACT
TCCAGCGCCTGAAAAGCTACATCTTCGACGACGAGAAGGTGTCCACCACC
ACATCCCGCGAGCAACAAAAGACGGAGAGTTCGGTGGAGAAATGCTTCGA
CCGCTTCGAGCAGATAATGTTCACCGACCCGCGCCTCACCCAGATCTTCC
GGCTGGAGCACCAGTACTACCTGGACGCGATGCTGAGGCGGCTGCCGTCC
AATTACGAGTGCCTGGACAGCAGTCGCGCGTGGTGCGTTTACTGGATCCT
GCAGGCGGCCCAGCTACTTAGCTTTAACTTCGACGACCAGACATTGAACC
ACGTGGTCCAGTTTCTAAGCAACTGCCGTTCGCCGACTGGGGGTTTTGGA
GGAGGACCTGGACAGTATGCCCATCTGGCGCCCACCTATGCAGCAGTGAA
CAGTCTGTGCATCATCGGAAGCGAGCAGGCGTACCGTGCCATAGACCGAC
CGACTTTGGTCCAGTTCCTGTTCAGTGTACGTGACTCAGACGGCTCCTTC
CGGCTCCACGTGGATGGTGAGACGGATGTGCGTGGCGCCTACTGCGCAAT
CTCCTGCGCAAAGCTGCTAAATCTTCCCGAGCCAGTGATCAAGGAGCTAT
TTGCCGGCACTGGCGACTGGATAGCCCAGTGTCAGACATACGAGGGAGGA
TTTGGAGGAGCCCCTGGTCTGGAGGCCCATGGTGGCTACACCTTCTGCGG
AATCGCGGGCCTGGCGCTGCTCAACGAGGCTGATAAGTGCGACAGGCAGG
CTTTGCTCAAATGGACACTGCGCCGTCAGATGACCTACGAAGGCGGCTTC
CAAGGGAGGACCAACAAACTGGTTGATGGCTGCTACTCCTTCTGGGTGGG
AGCCACCATTCCCATTACGCAGGCAACGCTATCCGGCGTCGATAAGCAAA
TGGAGCACACCCTTTTCGATGTGGAGGCCCTGCAGGAGTACATCCTGCTC
TGCTGCCAAAAGCAGAGCGGCGGGCTTATCGACAAACCCGGAAAACCGCA
GGATCTCTACCACACATGCTATACTCTTAGTGGCGTTTCCATTGCCCAGC
ACTCGGAGTGCGCCAGCAGCCCCCAGGTCCTGGGCGACACCATTAACGAG
CTACTGCCTACCCACCCACTGTTCAACATCCCACCAAAGTCAGTTGCAGC
TGCCAGGAGCCACTTCAGCAATTCCAATGACACAGAGTTCTTGGGGAAAG
ACAGTCCCAGCAAGGAGGAGAGTTAAAAGCTTTCTAGACCAT

BS08492.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:18:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG17565-RA 1260 CG17565-PA 1..1260 17..1276 6300 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:18:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG17565-RA 1569 CG17565-RA 79..1345 10..1276 6305 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:18:25
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16433557..16434228 373..1044 3360 100 Plus
3R 32079331 3R 16433234..16433498 112..376 1295 99.2 Plus
3R 32079331 3R 16434285..16434516 1045..1276 1160 100 Plus
3R 32079331 3R 16433076..16433181 10..115 500 98.1 Plus
Blast to na_te.dros performed on 2014-11-27 13:18:26 has no hits.

BS08492.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:02:58 Download gff for BS08492.complete
Subject Subject Range Query Range Percent Splice Strand
CG17565-RA 1..1260 17..1276 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:40:50 Download gff for BS08492.complete
Subject Subject Range Query Range Percent Splice Strand
CG17565-RA 96..1370 10..1287 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:25:49 Download gff for BS08492.complete
Subject Subject Range Query Range Percent Splice Strand
CG17565-RA 86..1343 17..1274 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:02:58 Download gff for BS08492.complete
Subject Subject Range Query Range Percent Splice Strand
CG17565-RA 96..1370 10..1287 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:15:27 Download gff for BS08492.complete
Subject Subject Range Query Range Percent Splice Strand
CG17565-RA 86..1343 17..1274 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:15:27 Download gff for BS08492.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16433083..16433181 17..115 100 -> Plus
3R 16433238..16433494 116..372 100 -> Plus
3R 16433557..16434228 373..1044 100 -> Plus
3R 16434285..16434514 1045..1274 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:25:49 Download gff for BS08492.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12258805..12258903 17..115 100 -> Plus
arm_3R 12258960..12259216 116..372 100 -> Plus
arm_3R 12259279..12259950 373..1044 100 -> Plus
arm_3R 12260007..12260236 1045..1274 100   Plus

BS08492.pep Sequence

Translation from 16 to 1275

> BS08492.pep
MGTEEELMFRNFQRLKSYIFDDEKVSTTTSREQQKTESSVEKCFDRFEQI
MFTDPRLTQIFRLEHQYYLDAMLRRLPSNYECLDSSRAWCVYWILQAAQL
LSFNFDDQTLNHVVQFLSNCRSPTGGFGGGPGQYAHLAPTYAAVNSLCII
GSEQAYRAIDRPTLVQFLFSVRDSDGSFRLHVDGETDVRGAYCAISCAKL
LNLPEPVIKELFAGTGDWIAQCQTYEGGFGGAPGLEAHGGYTFCGIAGLA
LLNEADKCDRQALLKWTLRRQMTYEGGFQGRTNKLVDGCYSFWVGATIPI
TQATLSGVDKQMEHTLFDVEALQEYILLCCQKQSGGLIDKPGKPQDLYHT
CYTLSGVSIAQHSECASSPQVLGDTINELLPTHPLFNIPPKSVAAARSHF
SNSNDTEFLGKDSPSKEES*

BS08492.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:22:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG17565-PA 419 CG17565-PA 1..419 1..419 2237 100 Plus
betaggt-II-PA 347 CG18627-PA 61..318 91..363 345 31.4 Plus
betaggt-I-PB 376 CG3469-PB 109..320 133..358 279 34.8 Plus
betaggt-I-PA 395 CG3469-PA 109..320 133..358 279 34.8 Plus