Clone BS08494 Report

Search the DGRC for BS08494

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:84
Well:94
Vector:pDNR-Dual
Associated Gene/TranscriptSap47-RA
Protein status:BS08494.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08494.3prime Sequence

831 bp (810 high quality bases) assembled on 2006-01-10

> BS08494.3prime
ATGGTCTAGAAAGCTTTTACTTTAAATCATCGGTATCCTCAATTAAATCG
GCGTACTCCTCCCAATCGTTGTTAGTCGAGCGTGTGCGCAAGTTTGATAT
TGTCGGTTCGTCCTCATCTGCCTCGGTGTCGTCCTCGCCGGCCTTCCTGC
CCTTTCTGCGTCCTCCGCCACCATCGCCGCCGGTGCCGCCTTCGTCAACC
ACCTCGTAGTCCTTGAGTTCAGCTTCCAGATCCTTTTCCCATTGTTCCTC
ATCAGTCGCAGCTAATGCCTGCTGGGTCATGCTGTCGATGCCCAATTTGC
GCATGCCGTCTTGGATCTCAGCCAAGTCCGATTCGCTCGAGGCCTGGAAG
TCATCCGAAACGAATTCCGATTCGGAGATCTTCTGGCCCAGCTCTTTGCC
GGCTTGAGCCTTTGCCTTTGCCTTTGACTTGGCTGCCTGGACATCGCACT
CCTGCGCCTCCGGCTCAATCACGGCCTTCGGCTGCTCGGCAATGGCTTTC
ACACTCGAATCGCCCTTGGCTGGTTCGGCAGTCTTGGATTTCTTTTCTTT
AGTGGCCACTTCGTTGGCATCTTCGCCGCTTGAGGCCTGACCCACGCCAT
CGGCGCCCAGAGTGCCCAACTCGGCGGCCTGGATGATCAGTGAGACGCGG
TAGAAGTAATTCCGCCAGAAATTCTCTTCAGTGATGATCTTGGGCACCAG
CTCGAATCGCATCGTCTCGAGCGCCTTGTCTTCGGCCATAATGGCTATGG
CCGTANGATAGGCGGTGTCGTAGCTAAACTCAAAGTCCACGCCGGCGGGC
GGGGCGCGCACGAAGTTGCGGCGATCCTGCG

BS08494.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:08:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG8884-PA 1656 Sap47-RA 842..1656 831..17 4056 99.8 Minus
CG8884-PC 1656 Sap47-RC 842..1656 831..17 4056 99.8 Minus
CG8884-PD 1656 Sap47-RD 842..1656 831..17 4056 99.8 Minus
CG8884-PE 1656 Sap47-RE 842..1656 831..17 4056 99.8 Minus
CG8884-PG 1608 Sap47-RG 794..1608 831..17 4056 99.8 Minus
CG8884-PH 1656 Sap47-RH 842..1656 831..17 4056 99.8 Minus
CG8884-PB 1125 Sap47-RB 842..1106 831..567 1306 99.6 Minus
CG8884-PF 1056 Sap47-RF 773..1037 831..567 1306 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:56:44
Subject Length Description Subject Range Query Range Score Percent Strand
Sap47-RG 4819 CG8884-RG 1433..2247 831..17 4064 99.9 Minus
Sap47-RE 4989 CG8884-RE 1603..2417 831..17 4064 99.9 Minus
Sap47-RD 5171 CG8884-RD 1785..2599 831..17 4064 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:56:36
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15955989..15956307 568..250 1595 100 Minus
3R 32079331 3R 15959319..15959552 250..17 1170 100 Minus
3R 32079331 3R 15954877..15955021 831..687 714 99.3 Minus
3R 32079331 3R 15955087..15955205 686..568 595 100 Minus
Blast to na_te.dros performed on 2015-02-06 10:56:40 has no hits.

BS08494.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:42:13 Download gff for BS08494.3prime
Subject Subject Range Query Range Percent Splice Strand
Sap47-PA 842..1656 17..831 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:42:02 Download gff for BS08494.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8884-PC 842..1656 17..831 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:31:24 Download gff for BS08494.3prime
Subject Subject Range Query Range Percent Splice Strand
Sap47-RD 1785..2599 17..831 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:41:05 Download gff for BS08494.3prime
Subject Subject Range Query Range Percent Splice Strand
Sap47-RD 1785..2599 17..831 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:41:05 Download gff for BS08494.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 15955087..15955205 568..686 100 -> Minus
3R 15954877..15955021 687..831 99 -> Minus
3R 15955990..15956307 250..567 100 -> Minus
3R 15959320..15959552 17..249 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:31:24 Download gff for BS08494.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11780599..11780743 687..831 99 -> Minus
arm_3R 11780809..11780927 568..686 100 -> Minus
arm_3R 11781712..11782029 250..567 100 -> Minus
arm_3R 11785042..11785274 17..249 100   Minus

BS08494.5prime Sequence

851 bp (785 high quality bases) assembled on 2006-01-10

> BS08494.5prime
GAAGTTATCAGTCGACATGTTTTCGGGCCTAACAAATCAATTCACCTCGC
TGGTGGGCGCCGTTAAAGGAGGCGCTGGCGACGAGGATGTGCCCGCGCCC
ACAGGAGATGCGCCCGCAGCCGCTCCAGCAGCATCCACATCCGTGGAGGC
CACGGCCTCCTCCGCCGTGGACCCGGAGGCAGCTGCCGCAGCCGGTGGCG
AAGGACTCGAGGGCGAGGAAGCTGGCAAAAGACTTCCCAAATCCGCCTCC
CTGGTTGATTCATTAGTATCCGAAGCCACCGGATGGCTGGGCAGTGCCAA
GGGTTGGCTGGGAAACGCCTCGATACCGTCGATGCCAGCCATGCCGTCGA
TGCCATCGATGCCGGCCATGCCAGCGATGCCATCGATACCATCGATCCCG
GGACTCCGCAAGGGCGCAGGAGCCGATGGAGCCGAGGGCGCCGAGGGAGC
TGTCGCCGGAGAGGGCGGGGCCGCCGCCAGTGGAGCCGTGAGTGGTGGCG
AGGATGACGACAAGTCGAGGTATATTAGCGCCACGGAGGGCGCCGACTCG
CATCCTGCATCGGGCGGTGGCACGCCCACCGGCGACGAGGGTCAAATCGG
ACAGGGTAAGGGCGATGAAGTCAAAATTACCACAAAAGTAACACAGCAGG
CCAAACACTTTGGATCCTTCTTGTCATCGGCCATCAGCAAGGCTGGCAGC
AAAATCAAGGAAACTGTCAAGGATAATACCATTCTCGACTCGTTCAACAA
GGAACAGGAAGCTTTCATCAAGGGCCAGGGAGGCGTGAGCAATGGAGCAG
CCCCCTGGATCGGACACGCCAACGAGGCCAAGATCAAGGAGGAAATCCTT
T

BS08494.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:08:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG8884-PA 1656 Sap47-RA 1..834 17..850 4145 99.8 Plus
CG8884-PB 1125 Sap47-RB 1..834 17..850 4145 99.8 Plus
CG8884-PC 1656 Sap47-RC 1..834 17..850 4145 99.8 Plus
CG8884-PD 1656 Sap47-RD 1..834 17..850 4145 99.8 Plus
CG8884-PE 1656 Sap47-RE 1..834 17..850 4145 99.8 Plus
CG8884-PH 1656 Sap47-RH 1..834 17..850 4145 99.8 Plus
CG8884-PG 1608 Sap47-RG 216..786 280..850 2830 99.8 Plus
CG8884-PF 1056 Sap47-RF 216..541 280..605 1630 100 Plus
CG8884-PF 1056 Sap47-RF 542..765 627..850 1095 99.5 Plus
CG8884-PG 1608 Sap47-RG 1..215 17..231 1075 100 Plus
CG8884-PF 1056 Sap47-RF 1..215 17..231 1075 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:03:01
Subject Length Description Subject Range Query Range Score Percent Strand
Sap47-RE 4989 CG8884-RE 760..1595 15..850 4165 99.9 Plus
Sap47-RD 5171 CG8884-RD 942..1777 15..850 4165 99.9 Plus
Sap47-RC 4843 CG8884-RC 614..1449 15..850 4165 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:02:59
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15951602..15951850 280..528 1245 100 Plus
3R 32079331 3R 15936124..15936340 15..231 1085 100 Plus
3R 32079331 3R 15954747..15954869 728..850 600 99.2 Plus
3R 32079331 3R 15954156..15954259 527..630 505 99 Plus
3R 32079331 3R 15954583..15954683 627..727 505 100 Plus
3R 32079331 3R 15944947..15944996 230..279 250 100 Plus
Blast to na_te.dros performed on 2015-02-10 20:03:00 has no hits.

BS08494.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:42:14 Download gff for BS08494.5prime
Subject Subject Range Query Range Percent Splice Strand
Sap47-PH 1..834 17..851 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:42:04 Download gff for BS08494.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8884-PD 1..834 17..851 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:27:33 Download gff for BS08494.5prime
Subject Subject Range Query Range Percent Splice Strand
Sap47-RC 609..1449 10..851 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:36:35 Download gff for BS08494.5prime
Subject Subject Range Query Range Percent Splice Strand
Sap47-RC 609..1449 10..851 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:36:35 Download gff for BS08494.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 15936119..15936340 10..231 99 -> Plus
3R 15944949..15944996 232..279 100 -> Plus
3R 15951602..15951850 280..528 100 -> Plus
3R 15954158..15954255 529..626 100 -> Plus
3R 15954583..15954683 627..727 100 -> Plus
3R 15954747..15954869 728..851 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:27:33 Download gff for BS08494.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11780305..11780405 627..727 100 -> Plus
arm_3R 11761841..11762062 10..231 99 -> Plus
arm_3R 11770671..11770718 232..279 100 -> Plus
arm_3R 11777324..11777572 280..528 100 -> Plus
arm_3R 11779880..11779977 529..626 100 -> Plus
arm_3R 11780469..11780591 728..851 98   Plus

BS08494.complete Sequence

1688 bp assembled on 2008-01-16

GenBank Submission: FJ636183

> BS08494.complete
GAAGTTATCAGTCGACATGTTTTCGGGCCTAACAAATCAATTCACCTCGC
TGGTGGGCGCCGTTAAAGGAGGCGCTGGCGACGAGGATGTGCCCGCGCCC
ACAGGAGATGCGCCCGCAGCCGCTCCAGCAGCATCCACATCCGTGGAGGC
CACGGCCTCCTCCGCCGTGGACCCGGAGGCAGCTGCCGCAGCCGGTGGCG
AAGGACTCGAGGGCGAGGAAGCTGGCAAAAGACTTCCCAAATCCGCCTCC
CTGGTTGATTCATTAGTATCCGAAGCCACCGGATGGCTGGGCAGTGCCAA
GGGTTGGCTGGGAAACGCCTCGATACCGTCGATGCCAGCCATGCCGTCGA
TGCCATCGATGCCGGCCATGCCAGCGATGCCATCGATACCATCGATCCCG
GGACTCCGCAAGGGCGCAGGAGCCGATGGAGCCGAGGGCGCCGAGGGAGC
TGTCGCCGGAGAGGGCGGGGCCGCCGCCAGTGGAGCCGTGAGTGGTGGCG
AGGATGACGACAAGTCGAGGTATATTAGCGCCACGGAGGGCGCCGACTCG
CATCCTGCATCGGGCGGTGGCACGCCCACCGGCGACGAGGGTCAAATCGG
ACAGGGTAAGGGCGATGAAGTCAAAATTACCACAAAAGTAACACAGCAGG
CCAAACACTTTGGATCCTTCTTGTCATCGGCCATCAGCAAGGCTGGCAGC
AAAATCAAGGAAACTGTCAAGGATAATACCATTCTCGACTCGTTCAACAA
GGAACAGGAAGCTTTCATCAAGGGCCAGGGAGGCGTGGGCAATGGAGCAG
CCCCCTGGATCGGACACGCCAACGAGGCCAAGATCAAGGAGGAAATCCTT
GGCCTGTCGCAGGATCGCCGCAACTTCGTGCGCGCCCCGCCCGCCGGCGT
GGACTTTGAGTTTAGCTACGACACCGCCTATCCTACGGCCATAGCCATTA
TGGCCGAAGACAAGGCGCTCGAGACGATGCGATTCGAGCTGGTGCCCAAG
ATCATCACTGAAGAGAATTTCTGGCGGAATTACTTCTACCGCGTCTCACT
GATCATCCAGGCCGCCGAGTTGGGCACTCTGGGCGCCGATGGCGTGGGTC
AGGCCTCAAGCGGCGAAGATGCCAACGAAGTGGCCACTAAAGAAAAGAAA
TCCAAGACTGCCGAACCAGCCAAGGGCGATTCGAGTGTGAAAGCCATTGC
CGAGCAGCCGAAGGCCGTGATTGAGCCGGAGGCGCAGGAGTGCGATGTCC
AGGCAGCCAAGTCAAAGGCAAAGGCAAAGGCTCAAGCCGGCAAAGAGCTG
GGCCAGAAGATCTCCGAATCGGAATTCGTTTCGGATGACTTCCAGGCCTC
GAGCGAATCGGACTTGGCTGAGATCCAAGACGGCATGCGCAAATTGGGCA
TCGACAGCATGACCCAGCAGGCATTAGCTGCGACTGATGAGGAACAATGG
GAAAAGGATCTGGAAGCTGAACTCAAGGACTACGAGGTGGTTGACGAAGG
CGGCACCGGCGGCGATGGTGGCGGAGGACGCAGAAAGGGCAGGAAGGCCG
GCGAGGACGACACCGAGGCAGATGAGGACGAACCGACAATATCAAACTTG
CGCACACGCTCGACTAACAACGATTGGGAGGAGTACGCCGATTTAATTGA
GGATACCGATGATTTAAAGTAAAAGCTTTCTAGACCAT

BS08494.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:23:01
Subject Length Description Subject Range Query Range Score Percent Strand
Sap47-RE 1656 CG8884-PE 1..1656 17..1672 8280 100 Plus
Sap47-RD 1656 CG8884-PD 1..1656 17..1672 8280 100 Plus
Sap47-RC 1656 CG8884-PC 1..1656 17..1672 8280 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:23:02
Subject Length Description Subject Range Query Range Score Percent Strand
Sap47-RE 4989 CG8884-RE 760..2417 15..1672 8290 100 Plus
Sap47-RD 5171 CG8884-RD 942..2599 15..1672 8290 100 Plus
Sap47-RC 4843 CG8884-RC 614..2271 15..1672 8290 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:22:59
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15955989..15956307 1121..1439 1595 100 Plus
3R 32079331 3R 15954747..15955021 728..1002 1375 100 Plus
3R 32079331 3R 15951602..15951850 280..528 1245 100 Plus
3R 32079331 3R 15959319..15959552 1439..1672 1170 100 Plus
3R 32079331 3R 15936124..15936340 15..231 1085 100 Plus
3R 32079331 3R 15955087..15955205 1003..1121 595 100 Plus
3R 32079331 3R 15954156..15954259 527..630 505 99 Plus
3R 32079331 3R 15954583..15954683 627..727 505 100 Plus
3R 32079331 3R 15944947..15944996 230..279 250 100 Plus
Blast to na_te.dros performed on 2014-11-28 05:23:00 has no hits.

BS08494.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:09:24 Download gff for BS08494.complete
Subject Subject Range Query Range Percent Splice Strand
Sap47-RD 1..1656 17..1672 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:34:29 Download gff for BS08494.complete
Subject Subject Range Query Range Percent Splice Strand
Sap47-RD 951..2597 24..1670 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:10:47 Download gff for BS08494.complete
Subject Subject Range Query Range Percent Splice Strand
Sap47-RC 623..2269 24..1670 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:09:24 Download gff for BS08494.complete
Subject Subject Range Query Range Percent Splice Strand
Sap47-RD 937..2599 10..1672 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:09:59 Download gff for BS08494.complete
Subject Subject Range Query Range Percent Splice Strand
Sap47-RC 623..2269 24..1670 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:09:59 Download gff for BS08494.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15955990..15956307 1122..1439 100 -> Plus
3R 15959320..15959550 1440..1670 100   Plus
3R 15936133..15936340 24..231 100 -> Plus
3R 15944949..15944996 232..279 100 -> Plus
3R 15951602..15951850 280..528 100 -> Plus
3R 15954158..15954255 529..626 100 -> Plus
3R 15954583..15954683 627..727 100 -> Plus
3R 15954747..15955021 728..1002 100 -> Plus
3R 15955087..15955205 1003..1121 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:10:47 Download gff for BS08494.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11779880..11779977 529..626 100 -> Plus
arm_3R 11780305..11780405 627..727 100 -> Plus
arm_3R 11761855..11762062 24..231 100 -> Plus
arm_3R 11770671..11770718 232..279 100 -> Plus
arm_3R 11777324..11777572 280..528 100 -> Plus
arm_3R 11780469..11780743 728..1002 100 -> Plus
arm_3R 11780809..11780927 1003..1121 100 -> Plus
arm_3R 11781712..11782029 1122..1439 100 -> Plus
arm_3R 11785042..11785272 1440..1670 100   Plus

BS08494.pep Sequence

Translation from 16 to 1671

> BS08494.pep
MFSGLTNQFTSLVGAVKGGAGDEDVPAPTGDAPAAAPAASTSVEATASSA
VDPEAAAAAGGEGLEGEEAGKRLPKSASLVDSLVSEATGWLGSAKGWLGN
ASIPSMPAMPSMPSMPAMPAMPSIPSIPGLRKGAGADGAEGAEGAVAGEG
GAAASGAVSGGEDDDKSRYISATEGADSHPASGGGTPTGDEGQIGQGKGD
EVKITTKVTQQAKHFGSFLSSAISKAGSKIKETVKDNTILDSFNKEQEAF
IKGQGGVGNGAAPWIGHANEAKIKEEILGLSQDRRNFVRAPPAGVDFEFS
YDTAYPTAIAIMAEDKALETMRFELVPKIITEENFWRNYFYRVSLIIQAA
ELGTLGADGVGQASSGEDANEVATKEKKSKTAEPAKGDSSVKAIAEQPKA
VIEPEAQECDVQAAKSKAKAKAQAGKELGQKISESEFVSDDFQASSESDL
AEIQDGMRKLGIDSMTQQALAATDEEQWEKDLEAELKDYEVVDEGGTGGD
GGGGRRKGRKAGEDDTEADEDEPTISNLRTRSTNNDWEEYADLIEDTDDL
K*

BS08494.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:38:44
Subject Length Description Subject Range Query Range Score Percent Strand
Sap47-PE 551 CG8884-PE 1..551 1..551 2799 100 Plus
Sap47-PD 551 CG8884-PD 1..551 1..551 2799 100 Plus
Sap47-PC 551 CG8884-PC 1..551 1..551 2799 100 Plus
Sap47-PA 551 CG8884-PA 1..551 1..551 2799 100 Plus
Sap47-PG 535 CG8884-PG 1..535 1..551 2696 96.9 Plus