Clone Sequence Records
BS08496.3prime Sequence
894 bp (797 high quality bases) assembled on 2006-01-10
> BS08496.3prime
ATGGTCTAGAAAGCTTTTACTCGTTGACAGAACTGGAGTTCAGCAGAGCC
GTGTCCTCGGGAATGGGCTTCCGCTTGTAGGAGGGCTCAGTGGCTAGGTA
GACAACCAGCGCCCCGAAGACCACGTACATTACTCCAATCACATTGGCCA
ACACACCAGCCGGTGGAAGAGTGGAGTAAGCCGGAGTTTTGATGGCGAAG
ATGGCCTTCTCGGTTATGCCCATCAGGGCACTAGCAATAGCCAGAACGAA
TCCAAAGAGTCCGAAGTAGATGTGCAGCGGCATCATGGCGATCCTGTAGT
TCTCCCTCAACCCCGGCGCCAAAAAGGCCACAAATCCGGCCACATACTGC
AGCGAGAAGACGATCACCGCGGAGAGCCCCAGCCAAGAGTGCAGGGAGTA
CATGTTGGGAATGGGCGGATTGGCCAAGTTGTGGGAATCGAAGACCGTCT
TCAGGGCAATCACCGTCAGAATGAATGCACCCATGTGGATGCCGGCGTGG
GTAAGCTTCAGAGTCTTCTTGCGCGTGGTGCGGAAACCACGATAGATCAG
AATGGAGTTGCCATACAGGTAAATGAAGCCAATGGTCATGAACAGCGGAT
GCCAGTTGAACTCCACGCCGGGATTTGAGGTGCCGGCCAGACCGCCGAAG
TGCTGGCCAATCCAGGTGGCCACCAGGACGATCATGGTCAGGCCGCACAG
CTGGGTGAGCACATAGAGCACCTTAAAGTTGATCAGCGCTGGATCCATGT
TGGCCTTGCCGCTGCCTGTTGGTGGTGAAGTTGCCGCCGCCGTTGGAGTG
GCCAACTCAATGCCAGCGATGGTTGTTGCAGGTTGCACTTGTTCTGCTGT
CGCAGGTGTTGCAGTTGTTGCTGGTGTCGCTGCCGCTGGCTTTT
BS08496.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:08:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1275-PB | 1023 | CG1275-RB | 146..1023 | 894..17 | 4390 | 100 | Minus |
CG1275-PA | 1023 | CG1275-RA | 146..1023 | 894..17 | 4390 | 100 | Minus |
CG1275-PC | 765 | CG1275-RC | 16..765 | 766..17 | 3750 | 100 | Minus |
CG1275-PD | 732 | CG1275-RD | 1..732 | 748..17 | 3660 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:11:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1275-RA | 1574 | CG1275-RA | 344..1221 | 894..17 | 4390 | 100 | Minus |
CG1275-RB | 1698 | CG1275-RB | 468..1345 | 894..17 | 4390 | 100 | Minus |
CG1275-RC | 1300 | CG1275-RC | 207..956 | 766..17 | 3750 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:11:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 2253329..2253692 | 192..555 | 1820 | 100 | Plus |
3L | 28110227 | 3L | 2253777..2253989 | 556..768 | 1065 | 100 | Plus |
3L | 28110227 | 3L | 2253097..2253271 | 17..191 | 875 | 100 | Plus |
3L | 28110227 | 3L | 2255538..2255667 | 765..894 | 650 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 04:11:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7940..8023 | 891..817 | 120 | 66.7 | Minus |
TART-C | 11124 | TART-C TARTC 11124bp | 9384..9467 | 891..817 | 120 | 66.7 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2949..2989 | 888..848 | 115 | 75.6 | Minus |
BS08496.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:42:18 Download gff for
BS08496.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1275-PB | 146..1023 | 17..894 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:42:10 Download gff for
BS08496.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1275-PA | 146..1023 | 17..894 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:40:36 Download gff for
BS08496.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1275-RB | 468..1350 | 12..894 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:53:57 Download gff for
BS08496.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1275-RB | 468..1350 | 12..894 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:53:57 Download gff for
BS08496.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 2253092..2253271 | 12..191 | 98 | <- | Plus |
3L | 2253329..2253692 | 192..555 | 100 | <- | Plus |
3L | 2253777..2253986 | 556..765 | 100 | <- | Plus |
3L | 2255539..2255667 | 766..894 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:40:36 Download gff for
BS08496.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 2253092..2253271 | 12..191 | 98 | <- | Plus |
arm_3L | 2253329..2253692 | 192..555 | 100 | <- | Plus |
arm_3L | 2253777..2253986 | 556..765 | 100 | <- | Plus |
arm_3L | 2255539..2255667 | 766..894 | 100 | | Plus |
BS08496.5prime Sequence
867 bp (816 high quality bases) assembled on 2006-01-10
> BS08496.5prime
GAAGTTATCAGTCGACATGTCGAAGGACGCGGACGTGGAGCAGGCGACCA
AGCCGGAGAGCGGAGTTGTCCAGGTGGAGCCAGCGATTCCGGAGCAGCCA
CAGGCCGCCGTTCCGACCACCATCTCCACGGCGACCACAGTGATCGCGGT
GACTAATGGGGAAAAGCCAGCGGCAGCGACACCAGCAACAACTGCAACAC
CTGCGACAGCAGAACAAGTGCAACCTGCAACAACCATCGCTGGCATTGAG
TTGGCCACTCCAACGGCGGCGGCAACTTCACCACCAACAGGCAGCGGCAA
GGCCAACATGGATCCAGCGCTGATCAACTTTAAGGTGCTCTATGTGCTCA
CCCAGCTGTGCGGCCTGACCATGATCGTCCTGGTGGCCACCTGGATTGGC
CAGCACTTCGGCGGTCTGGCCGGCACCTCAAATCCCGGCGTGGAGTTCAA
CTGGCATCCGCTGTTCATGACCATTGGCTTCATTTACCTGTATGGCAACT
CCATTCTGATCTATCGTGGTTTCCGCACCACGCGCAAGAAGACTCTGAAG
CTTACCCACGCCGGCATCCACATGGGTGCATTCATTCTGACGGTGATTGC
CCTGAAGACGGTCTTCGATTCCCACAACTTGGCCAATCCGCCCATTCCCA
ACATGTACTCCCTGCACTCTTGGCTGGGGCTCTCCGCGGTGATCGTCTTC
TCGCTGCAGTATGTGGCCGGATTTGTGGCCTTTTTGGCGCCGGGGTTGAG
GGAGAACTACAGGATCGCCATGATGCCGCTGCACATCTACTTCGGACTCT
TTGGATTCGTTCTGGCTATTGCTAGTGCCCTGATGGGCATAACCGAGGAA
GCCATCTTCGCCATCAA
BS08496.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:08:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1275-PB | 1023 | CG1275-RB | 1..851 | 17..867 | 4205 | 99.7 | Plus |
CG1275-PA | 1023 | CG1275-RA | 1..851 | 17..867 | 4205 | 99.7 | Plus |
CG1275-PC | 765 | CG1275-RC | 16..593 | 290..867 | 2840 | 99.6 | Plus |
CG1275-PD | 732 | CG1275-RD | 1..560 | 308..867 | 2750 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 01:22:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1275-RA | 1574 | CG1275-RA | 198..1049 | 16..867 | 4230 | 99.8 | Plus |
CG1275-RB | 1698 | CG1275-RB | 322..1173 | 16..867 | 4230 | 99.8 | Plus |
CG1275-RC | 1300 | CG1275-RC | 207..784 | 290..867 | 2860 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 01:22:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 2253329..2253692 | 864..501 | 1790 | 99.5 | Minus |
3L | 28110227 | 3L | 2255538..2255813 | 291..16 | 1380 | 100 | Minus |
3L | 28110227 | 3L | 2253777..2253989 | 500..288 | 1065 | 100 | Minus |
Blast to na_te.dros performed 2015-02-04 01:22:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TART-C | 11124 | TART-C TARTC 11124bp | 9338..9467 | 115..239 | 126 | 61.2 | Plus |
Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7902..8023 | 123..239 | 122 | 61.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2949..2989 | 168..208 | 115 | 75.6 | Plus |
BS08496.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:42:19 Download gff for
BS08496.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1275-PB | 1..849 | 17..865 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:42:11 Download gff for
BS08496.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1275-PA | 1..849 | 17..865 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:40:19 Download gff for
BS08496.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1275-RB | 317..1171 | 9..865 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:28:59 Download gff for
BS08496.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1275-RB | 317..1171 | 9..865 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:28:59 Download gff for
BS08496.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 2253328..2253692 | 501..865 | 99 | <- | Minus |
3L | 2253777..2253986 | 291..500 | 100 | <- | Minus |
3L | 2255539..2255818 | 9..290 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:40:19 Download gff for
BS08496.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 2253328..2253692 | 501..865 | 99 | <- | Minus |
arm_3L | 2253777..2253986 | 291..500 | 100 | <- | Minus |
arm_3L | 2255539..2255818 | 9..290 | 98 | | Minus |
BS08496.complete Sequence
1055 bp (1055 high quality bases) assembled on 2006-01-18
GenBank Submission: FJ636184
> BS08496.complete
GAAGTTATCAGTCGACATGTCGAAGGACGCGGACGTGGAGCAGGCGACCA
AGCCGGAGAGCGGAGTTGTCCAGGTGGAGCCAGCGATTCCGGAGCAGCCA
CAGGCCGCCGTTCCGACCACCATCTCCACGGCGACCACAGTGATCGCGGT
GACTAATGGGGAAAAGCCAGCGGCAGCGACACCAGCAACAACTGCAACAC
CTGCGACAGCAGAACAAGTGCAACCTGCAACAACCATCGCTGGCATTGAG
TTGGCCACTCCAACGGCGGCGGCAACTTCACCACCAACAGGCAGCGGCAA
GGCCAACATGGATCCAGCGCTGATCAACTTTAAGGTGCTCTATGTGCTCA
CCCAGCTGTGCGGCCTGACCATGATCGTCCTGGTGGCCACCTGGATTGGC
CAGCACTTCGGCGGTCTGGCCGGCACCTCAAATCCCGGCGTGGAGTTCAA
CTGGCATCCGCTGTTCATGACCATTGGCTTCATTTACCTGTATGGCAACT
CCATTCTGATCTATCGTGGTTTCCGCACCACGCGCAAGAAGACTCTGAAG
CTTACCCACGCCGGCATCCACATGGGTGCATTCATTCTGACGGTGATTGC
CCTGAAGACGGTCTTCGATTCCCACAACTTGGCCAATCCGCCCATTCCCA
ACATGTACTCCCTGCACTCTTGGCTGGGGCTCTCCGCGGTGATCGTCTTC
TCGCTGCAGTATGTGGCCGGATTTGTGGCCTTTTTGGCGCCGGGGTTGAG
GGAGAACTACAGGATCGCCATGATGCCGCTGCACATCTACTTCGGACTCT
TTGGATTCGTTCTGGCTATTGCTAGTGCCCTGATGGGCATAACCGAGAAG
GCCATCTTCGCCATCAAAACTCCGGCTTACTCCACTCTTCCACCGGCTGG
TGTGTTGGCCAATGTGATTGGAGTAATGTACGTGGTCTTCGGGGCGCTGG
TTGTCTACCTAGCCACTGAGCCCTCCTACAAGCGGAAGCCCATTCCCGAG
GACACGGCTCTGCTGAACTCCAGTTCTGTCAACGAGTAAAAGCTTTCTAG
ACCAT
BS08496.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:44:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1275-RA | 1023 | CG1275-PA | 1..1023 | 17..1039 | 5115 | 100 | Plus |
CG1275-RB | 1023 | CG1275-PB | 1..1023 | 17..1039 | 5115 | 100 | Plus |
CG1275-RC | 765 | CG1275-PC | 16..765 | 290..1039 | 3750 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:44:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1275-RA | 1574 | CG1275-RA | 198..1221 | 16..1039 | 5120 | 100 | Plus |
CG1275-RB | 1698 | CG1275-RB | 322..1345 | 16..1039 | 5120 | 100 | Plus |
CG1275-RC | 1300 | CG1275-RC | 207..956 | 290..1039 | 3750 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:44:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 2253329..2253692 | 864..501 | 1820 | 100 | Minus |
3L | 28110227 | 3L | 2255538..2255813 | 291..16 | 1380 | 100 | Minus |
3L | 28110227 | 3L | 2253777..2253989 | 500..288 | 1065 | 100 | Minus |
3L | 28110227 | 3L | 2253097..2253271 | 1039..865 | 875 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 00:44:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2949..2989 | 168..208 | 115 | 75.6 | Plus |
BS08496.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:02:34 Download gff for
BS08496.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1275-RA | 1..1023 | 17..1039 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:40:19 Download gff for
BS08496.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1275-RA | 194..1227 | 9..1044 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:58:44 Download gff for
BS08496.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1275-RB | 323..1343 | 17..1037 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:02:34 Download gff for
BS08496.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1275-RA | 194..1227 | 9..1044 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:25:56 Download gff for
BS08496.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1275-RB | 323..1343 | 17..1037 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:25:56 Download gff for
BS08496.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 2255539..2255812 | 17..290 | 100 | | Minus |
3L | 2253329..2253692 | 501..864 | 100 | <- | Minus |
3L | 2253777..2253986 | 291..500 | 100 | <- | Minus |
3L | 2253099..2253271 | 865..1037 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:58:44 Download gff for
BS08496.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 2253777..2253986 | 291..500 | 100 | <- | Minus |
arm_3L | 2253099..2253271 | 865..1037 | 100 | <- | Minus |
arm_3L | 2253329..2253692 | 501..864 | 100 | <- | Minus |
arm_3L | 2255539..2255812 | 17..290 | 100 | | Minus |
BS08496.pep Sequence
Translation from 16 to 1038
> BS08496.pep
MSKDADVEQATKPESGVVQVEPAIPEQPQAAVPTTISTATTVIAVTNGEK
PAAATPATTATPATAEQVQPATTIAGIELATPTAAATSPPTGSGKANMDP
ALINFKVLYVLTQLCGLTMIVLVATWIGQHFGGLAGTSNPGVEFNWHPLF
MTIGFIYLYGNSILIYRGFRTTRKKTLKLTHAGIHMGAFILTVIALKTVF
DSHNLANPPIPNMYSLHSWLGLSAVIVFSLQYVAGFVAFLAPGLRENYRI
AMMPLHIYFGLFGFVLAIASALMGITEKAIFAIKTPAYSTLPPAGVLANV
IGVMYVVFGALVVYLATEPSYKRKPIPEDTALLNSSSVNE*
BS08496.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:23:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1275-PA | 340 | CG1275-PA | 1..340 | 1..340 | 1731 | 100 | Plus |
CG1275-PB | 340 | CG1275-PB | 1..340 | 1..340 | 1731 | 100 | Plus |
CG1275-PC | 254 | CG1275-PC | 6..254 | 92..340 | 1284 | 100 | Plus |
CG1275-PD | 243 | CG1275-PD | 1..243 | 98..340 | 1253 | 100 | Plus |
nemy-PA | 290 | CG8776-PA | 27..271 | 81..314 | 290 | 31.6 | Plus |