Clone BS08496 Report

Search the DGRC for BS08496

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:84
Well:96
Vector:pDNR-Dual
Associated Gene/TranscriptCG1275-RA
Protein status:BS08496.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08496.3prime Sequence

894 bp (797 high quality bases) assembled on 2006-01-10

> BS08496.3prime
ATGGTCTAGAAAGCTTTTACTCGTTGACAGAACTGGAGTTCAGCAGAGCC
GTGTCCTCGGGAATGGGCTTCCGCTTGTAGGAGGGCTCAGTGGCTAGGTA
GACAACCAGCGCCCCGAAGACCACGTACATTACTCCAATCACATTGGCCA
ACACACCAGCCGGTGGAAGAGTGGAGTAAGCCGGAGTTTTGATGGCGAAG
ATGGCCTTCTCGGTTATGCCCATCAGGGCACTAGCAATAGCCAGAACGAA
TCCAAAGAGTCCGAAGTAGATGTGCAGCGGCATCATGGCGATCCTGTAGT
TCTCCCTCAACCCCGGCGCCAAAAAGGCCACAAATCCGGCCACATACTGC
AGCGAGAAGACGATCACCGCGGAGAGCCCCAGCCAAGAGTGCAGGGAGTA
CATGTTGGGAATGGGCGGATTGGCCAAGTTGTGGGAATCGAAGACCGTCT
TCAGGGCAATCACCGTCAGAATGAATGCACCCATGTGGATGCCGGCGTGG
GTAAGCTTCAGAGTCTTCTTGCGCGTGGTGCGGAAACCACGATAGATCAG
AATGGAGTTGCCATACAGGTAAATGAAGCCAATGGTCATGAACAGCGGAT
GCCAGTTGAACTCCACGCCGGGATTTGAGGTGCCGGCCAGACCGCCGAAG
TGCTGGCCAATCCAGGTGGCCACCAGGACGATCATGGTCAGGCCGCACAG
CTGGGTGAGCACATAGAGCACCTTAAAGTTGATCAGCGCTGGATCCATGT
TGGCCTTGCCGCTGCCTGTTGGTGGTGAAGTTGCCGCCGCCGTTGGAGTG
GCCAACTCAATGCCAGCGATGGTTGTTGCAGGTTGCACTTGTTCTGCTGT
CGCAGGTGTTGCAGTTGTTGCTGGTGTCGCTGCCGCTGGCTTTT

BS08496.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:08:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG1275-PB 1023 CG1275-RB 146..1023 894..17 4390 100 Minus
CG1275-PA 1023 CG1275-RA 146..1023 894..17 4390 100 Minus
CG1275-PC 765 CG1275-RC 16..765 766..17 3750 100 Minus
CG1275-PD 732 CG1275-RD 1..732 748..17 3660 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:11:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG1275-RA 1574 CG1275-RA 344..1221 894..17 4390 100 Minus
CG1275-RB 1698 CG1275-RB 468..1345 894..17 4390 100 Minus
CG1275-RC 1300 CG1275-RC 207..956 766..17 3750 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:11:30
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 2253329..2253692 192..555 1820 100 Plus
3L 28110227 3L 2253777..2253989 556..768 1065 100 Plus
3L 28110227 3L 2253097..2253271 17..191 875 100 Plus
3L 28110227 3L 2255538..2255667 765..894 650 100 Plus
Blast to na_te.dros performed 2015-02-12 04:11:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\TART 8444 Dyak\TART TARTYAK 8444bp 7940..8023 891..817 120 66.7 Minus
TART-C 11124 TART-C TARTC 11124bp 9384..9467 891..817 120 66.7 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2949..2989 888..848 115 75.6 Minus

BS08496.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:42:18 Download gff for BS08496.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1275-PB 146..1023 17..894 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:42:10 Download gff for BS08496.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1275-PA 146..1023 17..894 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:40:36 Download gff for BS08496.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1275-RB 468..1350 12..894 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:53:57 Download gff for BS08496.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1275-RB 468..1350 12..894 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:53:57 Download gff for BS08496.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 2253092..2253271 12..191 98 <- Plus
3L 2253329..2253692 192..555 100 <- Plus
3L 2253777..2253986 556..765 100 <- Plus
3L 2255539..2255667 766..894 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:40:36 Download gff for BS08496.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 2253092..2253271 12..191 98 <- Plus
arm_3L 2253329..2253692 192..555 100 <- Plus
arm_3L 2253777..2253986 556..765 100 <- Plus
arm_3L 2255539..2255667 766..894 100   Plus

BS08496.5prime Sequence

867 bp (816 high quality bases) assembled on 2006-01-10

> BS08496.5prime
GAAGTTATCAGTCGACATGTCGAAGGACGCGGACGTGGAGCAGGCGACCA
AGCCGGAGAGCGGAGTTGTCCAGGTGGAGCCAGCGATTCCGGAGCAGCCA
CAGGCCGCCGTTCCGACCACCATCTCCACGGCGACCACAGTGATCGCGGT
GACTAATGGGGAAAAGCCAGCGGCAGCGACACCAGCAACAACTGCAACAC
CTGCGACAGCAGAACAAGTGCAACCTGCAACAACCATCGCTGGCATTGAG
TTGGCCACTCCAACGGCGGCGGCAACTTCACCACCAACAGGCAGCGGCAA
GGCCAACATGGATCCAGCGCTGATCAACTTTAAGGTGCTCTATGTGCTCA
CCCAGCTGTGCGGCCTGACCATGATCGTCCTGGTGGCCACCTGGATTGGC
CAGCACTTCGGCGGTCTGGCCGGCACCTCAAATCCCGGCGTGGAGTTCAA
CTGGCATCCGCTGTTCATGACCATTGGCTTCATTTACCTGTATGGCAACT
CCATTCTGATCTATCGTGGTTTCCGCACCACGCGCAAGAAGACTCTGAAG
CTTACCCACGCCGGCATCCACATGGGTGCATTCATTCTGACGGTGATTGC
CCTGAAGACGGTCTTCGATTCCCACAACTTGGCCAATCCGCCCATTCCCA
ACATGTACTCCCTGCACTCTTGGCTGGGGCTCTCCGCGGTGATCGTCTTC
TCGCTGCAGTATGTGGCCGGATTTGTGGCCTTTTTGGCGCCGGGGTTGAG
GGAGAACTACAGGATCGCCATGATGCCGCTGCACATCTACTTCGGACTCT
TTGGATTCGTTCTGGCTATTGCTAGTGCCCTGATGGGCATAACCGAGGAA
GCCATCTTCGCCATCAA

BS08496.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:08:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG1275-PB 1023 CG1275-RB 1..851 17..867 4205 99.7 Plus
CG1275-PA 1023 CG1275-RA 1..851 17..867 4205 99.7 Plus
CG1275-PC 765 CG1275-RC 16..593 290..867 2840 99.6 Plus
CG1275-PD 732 CG1275-RD 1..560 308..867 2750 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 01:22:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG1275-RA 1574 CG1275-RA 198..1049 16..867 4230 99.8 Plus
CG1275-RB 1698 CG1275-RB 322..1173 16..867 4230 99.8 Plus
CG1275-RC 1300 CG1275-RC 207..784 290..867 2860 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 01:22:23
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 2253329..2253692 864..501 1790 99.5 Minus
3L 28110227 3L 2255538..2255813 291..16 1380 100 Minus
3L 28110227 3L 2253777..2253989 500..288 1065 100 Minus
Blast to na_te.dros performed 2015-02-04 01:22:27
Subject Length Description Subject Range Query Range Score Percent Strand
TART-C 11124 TART-C TARTC 11124bp 9338..9467 115..239 126 61.2 Plus
Dyak\TART 8444 Dyak\TART TARTYAK 8444bp 7902..8023 123..239 122 61.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2949..2989 168..208 115 75.6 Plus

BS08496.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:42:19 Download gff for BS08496.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1275-PB 1..849 17..865 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:42:11 Download gff for BS08496.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1275-PA 1..849 17..865 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:40:19 Download gff for BS08496.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1275-RB 317..1171 9..865 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:28:59 Download gff for BS08496.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1275-RB 317..1171 9..865 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:28:59 Download gff for BS08496.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 2253328..2253692 501..865 99 <- Minus
3L 2253777..2253986 291..500 100 <- Minus
3L 2255539..2255818 9..290 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:40:19 Download gff for BS08496.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 2253328..2253692 501..865 99 <- Minus
arm_3L 2253777..2253986 291..500 100 <- Minus
arm_3L 2255539..2255818 9..290 98   Minus

BS08496.complete Sequence

1055 bp (1055 high quality bases) assembled on 2006-01-18

GenBank Submission: FJ636184

> BS08496.complete
GAAGTTATCAGTCGACATGTCGAAGGACGCGGACGTGGAGCAGGCGACCA
AGCCGGAGAGCGGAGTTGTCCAGGTGGAGCCAGCGATTCCGGAGCAGCCA
CAGGCCGCCGTTCCGACCACCATCTCCACGGCGACCACAGTGATCGCGGT
GACTAATGGGGAAAAGCCAGCGGCAGCGACACCAGCAACAACTGCAACAC
CTGCGACAGCAGAACAAGTGCAACCTGCAACAACCATCGCTGGCATTGAG
TTGGCCACTCCAACGGCGGCGGCAACTTCACCACCAACAGGCAGCGGCAA
GGCCAACATGGATCCAGCGCTGATCAACTTTAAGGTGCTCTATGTGCTCA
CCCAGCTGTGCGGCCTGACCATGATCGTCCTGGTGGCCACCTGGATTGGC
CAGCACTTCGGCGGTCTGGCCGGCACCTCAAATCCCGGCGTGGAGTTCAA
CTGGCATCCGCTGTTCATGACCATTGGCTTCATTTACCTGTATGGCAACT
CCATTCTGATCTATCGTGGTTTCCGCACCACGCGCAAGAAGACTCTGAAG
CTTACCCACGCCGGCATCCACATGGGTGCATTCATTCTGACGGTGATTGC
CCTGAAGACGGTCTTCGATTCCCACAACTTGGCCAATCCGCCCATTCCCA
ACATGTACTCCCTGCACTCTTGGCTGGGGCTCTCCGCGGTGATCGTCTTC
TCGCTGCAGTATGTGGCCGGATTTGTGGCCTTTTTGGCGCCGGGGTTGAG
GGAGAACTACAGGATCGCCATGATGCCGCTGCACATCTACTTCGGACTCT
TTGGATTCGTTCTGGCTATTGCTAGTGCCCTGATGGGCATAACCGAGAAG
GCCATCTTCGCCATCAAAACTCCGGCTTACTCCACTCTTCCACCGGCTGG
TGTGTTGGCCAATGTGATTGGAGTAATGTACGTGGTCTTCGGGGCGCTGG
TTGTCTACCTAGCCACTGAGCCCTCCTACAAGCGGAAGCCCATTCCCGAG
GACACGGCTCTGCTGAACTCCAGTTCTGTCAACGAGTAAAAGCTTTCTAG
ACCAT

BS08496.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:44:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG1275-RA 1023 CG1275-PA 1..1023 17..1039 5115 100 Plus
CG1275-RB 1023 CG1275-PB 1..1023 17..1039 5115 100 Plus
CG1275-RC 765 CG1275-PC 16..765 290..1039 3750 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:44:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG1275-RA 1574 CG1275-RA 198..1221 16..1039 5120 100 Plus
CG1275-RB 1698 CG1275-RB 322..1345 16..1039 5120 100 Plus
CG1275-RC 1300 CG1275-RC 207..956 290..1039 3750 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:44:45
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 2253329..2253692 864..501 1820 100 Minus
3L 28110227 3L 2255538..2255813 291..16 1380 100 Minus
3L 28110227 3L 2253777..2253989 500..288 1065 100 Minus
3L 28110227 3L 2253097..2253271 1039..865 875 100 Minus
Blast to na_te.dros performed 2014-11-28 00:44:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2949..2989 168..208 115 75.6 Plus

BS08496.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:02:34 Download gff for BS08496.complete
Subject Subject Range Query Range Percent Splice Strand
CG1275-RA 1..1023 17..1039 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:40:19 Download gff for BS08496.complete
Subject Subject Range Query Range Percent Splice Strand
CG1275-RA 194..1227 9..1044 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:58:44 Download gff for BS08496.complete
Subject Subject Range Query Range Percent Splice Strand
CG1275-RB 323..1343 17..1037 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:02:34 Download gff for BS08496.complete
Subject Subject Range Query Range Percent Splice Strand
CG1275-RA 194..1227 9..1044 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:25:56 Download gff for BS08496.complete
Subject Subject Range Query Range Percent Splice Strand
CG1275-RB 323..1343 17..1037 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:25:56 Download gff for BS08496.complete
Subject Subject Range Query Range Percent Splice Strand
3L 2255539..2255812 17..290 100   Minus
3L 2253329..2253692 501..864 100 <- Minus
3L 2253777..2253986 291..500 100 <- Minus
3L 2253099..2253271 865..1037 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:58:44 Download gff for BS08496.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 2253777..2253986 291..500 100 <- Minus
arm_3L 2253099..2253271 865..1037 100 <- Minus
arm_3L 2253329..2253692 501..864 100 <- Minus
arm_3L 2255539..2255812 17..290 100   Minus

BS08496.pep Sequence

Translation from 16 to 1038

> BS08496.pep
MSKDADVEQATKPESGVVQVEPAIPEQPQAAVPTTISTATTVIAVTNGEK
PAAATPATTATPATAEQVQPATTIAGIELATPTAAATSPPTGSGKANMDP
ALINFKVLYVLTQLCGLTMIVLVATWIGQHFGGLAGTSNPGVEFNWHPLF
MTIGFIYLYGNSILIYRGFRTTRKKTLKLTHAGIHMGAFILTVIALKTVF
DSHNLANPPIPNMYSLHSWLGLSAVIVFSLQYVAGFVAFLAPGLRENYRI
AMMPLHIYFGLFGFVLAIASALMGITEKAIFAIKTPAYSTLPPAGVLANV
IGVMYVVFGALVVYLATEPSYKRKPIPEDTALLNSSSVNE*

BS08496.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:23:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG1275-PA 340 CG1275-PA 1..340 1..340 1731 100 Plus
CG1275-PB 340 CG1275-PB 1..340 1..340 1731 100 Plus
CG1275-PC 254 CG1275-PC 6..254 92..340 1284 100 Plus
CG1275-PD 243 CG1275-PD 1..243 98..340 1253 100 Plus
nemy-PA 290 CG8776-PA 27..271 81..314 290 31.6 Plus