Clone Sequence Records
BS08505.3prime Sequence
918 bp (768 high quality bases) assembled on 2006-01-10
> BS08505.3prime
ATGGTCTAGAAAGCTTTCATTTGGAGCGCTTGGACCAGTCTTTGGGTGTC
CAGTGCAGGCATTTCGAGTCGATGCGGATCTTGCGCTTGTCCATTGCTCG
CCGGTGTTGCTCGATGATAACCCGGTTGATGCACACGATGTACTGGCCCT
TGTAGTAGTTGATCAGGTTCAGGTTCTGCAGCGTTGAGATCACGTCCTCT
TTTTTGATGGATGTGCATTCGCAGATGTCGTTTATAGTTATAGTGGGCTT
TTCGCCGTCCGTGCTCGGGTTTTGGCTGATAAAGATCTCCAGTATGGTTT
GCGCCCAGTACGATCGATAGGACAGCAAACCCAGATCAGACAATGGTTTC
TCCGGCGATCCCGTCTTGCCCTCGAACTTGGACAACTCGTAGCTGAACTC
AATGAGCAGCTTGCCGTAGCCCTTGCGCTGATACGGAGGCATTGTGAGAA
TGCAGGCCACGTTGTAGTCCTCTGTGCTCTCCTTCTCCTTGGAGAAGTAC
CCTACTATGTGGAAGCCGCGCGAGTCGAACTCTGTCATTACGTAGAAGAG
AAACGGATCGGTATCATAGTAGAGTGTCTTGTGGTCGAGAAAGAGTTTGG
CAAGCAGGCACAAGTTCTGGGCATACACCTTGTTTTTGCGTCCATCGATT
TCAAAGAAGGAAATTGTATGTTTGCGATAGATCTCGTTTCCCGGTGGATG
CCTAAGATTGCACTTGGACAGGTGCCTCTCCAGGCACTTCCTGCTCTTCC
TGTACTTCAGGCAGAACTCGCAGATGTAGATGCAGGGCATTTGACACAGC
TCTTGCGGATAGGGTGAGAAATACCAGGGCTTAATGCGATGCCTGCCCAG
CTCGATCATCTCCACGTTCTTCATGCGGGTGACCACGTCGTCCTGGTGCG
TACCATGCTGCCTGATTG
BS08505.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:08:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6121-PA | 1625 | Tip60-RA | 741..1625 | 902..18 | 4425 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:13:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tip60-RC | 1852 | CG6121-RC | 821..1723 | 918..17 | 4490 | 99.9 | Minus |
| Tip60-RA | 2390 | CG6121-RA | 1359..2261 | 918..17 | 4490 | 99.9 | Minus |
| Tip60-RB | 2368 | CG6121-RB | 1314..2239 | 918..17 | 4250 | 97.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:13:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 4115320..4116008 | 231..918 | 3395 | 99.9 | Plus |
| X | 23542271 | X | 4115002..4115214 | 18..230 | 1065 | 100 | Plus |
| 2R | 25286936 | 2R | 24102364..24102431 | 634..567 | 205 | 86.8 | Minus |
Blast to na_te.dros performed on 2015-02-10 19:13:48 has no hits.
BS08505.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:42:26 Download gff for
BS08505.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tip60-PA | 724..1625 | 18..918 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:42:20 Download gff for
BS08505.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6121-PA | 724..1625 | 18..918 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:00:47 Download gff for
BS08505.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tip60-RA | 1359..2265 | 9..918 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:33:08 Download gff for
BS08505.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tip60-RA | 1359..2265 | 9..918 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:33:08 Download gff for
BS08505.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 4114995..4115214 | 12..230 | 98 | <- | Plus |
| X | 4115320..4116008 | 231..918 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:00:47 Download gff for
BS08505.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 4009028..4009247 | 12..230 | 98 | <- | Plus |
| arm_X | 4009353..4010041 | 231..918 | 99 | | Plus |
BS08505.5prime Sequence
910 bp (822 high quality bases) assembled on 2006-01-10
> BS08505.5prime
GAAGTTATCAGTCGACATGAAAATTAACCACAAATATGAGTTCGACGACG
ATGTGGCCTCCATATGCGAGTCAACGGCCGCCCTAACCGAGGGATGTCGT
TTACCCGTCAGGATGCACAAAACGGACGACTGGCCACTAGCGGAGATTGT
GAGCATCAAGGAGTTGGATGGGCGCCGGCAGTTTTACGTGCACTATGTGG
ACTTCAACAAGCGCTTGGACGAGTGGGTCAACGAGGAGGATCTGTACACG
CGAAAGGTGCAATTTCCGCGGAGAGACGGCTCACAAACAGGCACCAGCAC
TGGAGTGACCACGCCACAGCGCCACCATTCCCTAGCGGGCAGCGTTTCTC
GGCCTACATCACCGCAACACCCTGGTTCCGGGGCTCTGGCAGCCATCCCC
CAGACTCCTACTGGTGCATCAGGCAGTGTTCCTCCCCCTGCTGGCATTCC
AAACTCTGTGGCTCCACCCGGAACACCAAGCAGTGGGGGAGAGCTTGTGA
ATGGCAACAATCTGGCCGCAGCCCTTCAGAAACGCATCAATCGCAAGCGA
AAAAACCACGGAGGCTCGGCCCATGGACACCACAGTCTGACCAGTCAACA
GCAGCAGTCACATCCGCATCCTACAACTCCGCAGACACCCACGGCTACGC
CCGTGCATGTGACCGGCGACGGTTTAATAAGCGGAGCGGCCAATGATGAT
GGTGATGGATCGCAGGATGGCAAGACGCCCACGCCGAGGCAATCAGGCAG
CATGGTTACGCACCAGGACGACGTGGTCACCCGCATGAAGAACGTGGAGA
TGATCGAGCTGGGCAGGCATCGCATTAAGCCCTGGTATTTCTCACCCTAT
CCGCAAGAGCTGTGTCAAATGCCCTGCATCTACTTCTGGGAGTTCTGCCT
GAAATACAGG
BS08505.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:08:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6121-PA | 1625 | Tip60-RA | 1..894 | 17..910 | 4395 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:31:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tip60-RC | 1852 | CG6121-RC | 98..991 | 17..910 | 4425 | 99.7 | Plus |
| Tip60-RB | 2368 | CG6121-RB | 591..1484 | 17..910 | 4425 | 99.7 | Plus |
| Tip60-RA | 2390 | CG6121-RA | 636..1529 | 17..910 | 4425 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:30:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 4115838..4116544 | 910..204 | 3490 | 99.6 | Minus |
| X | 23542271 | X | 4116599..4116726 | 203..76 | 640 | 100 | Minus |
| X | 23542271 | X | 4116792..4116852 | 77..17 | 305 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 12:30:59 has no hits.
BS08505.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:42:27 Download gff for
BS08505.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tip60-PA | 1..894 | 17..910 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:42:23 Download gff for
BS08505.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6121-PA | 1..894 | 17..910 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:25:07 Download gff for
BS08505.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tip60-RA | 636..1529 | 17..910 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:41:25 Download gff for
BS08505.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tip60-RA | 636..1529 | 17..910 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:41:25 Download gff for
BS08505.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 4115838..4116544 | 204..910 | 99 | <- | Minus |
| X | 4116599..4116725 | 77..203 | 100 | <- | Minus |
| X | 4116793..4116852 | 17..76 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:25:07 Download gff for
BS08505.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 4009871..4010577 | 204..910 | 99 | <- | Minus |
| arm_X | 4010632..4010758 | 77..203 | 100 | <- | Minus |
| arm_X | 4010826..4010885 | 17..76 | 100 | | Minus |
BS08505.complete Sequence
1658 bp assembled on 2007-10-17
GenBank Submission: FJ636186
> BS08505.complete
GAAGTTATCAGTCGACATGAAAATTAACCACAAATATGAGTTCGACGACG
ATGTGGCCTCCATATGCGAGTCAACGGCCGCCCTAACCGAGGGATGTCGT
TTACCCGTCAGGATGCACAAAACGGACGACTGGCCACTAGCGGAGATTGT
GAGCATCAAGGAGTTGGATGGGCGCCGGCAGTTTTACGTGCACTATGTGG
ACTTCAACAAGCGCTTGGACGAGTGGGTCAACGAGGAGGATCTGTACACG
CGAAAGGTGCAATTTCCGCGGAGAGACGGCTCACAAACAGGCACCAGCAC
TGGAGTGACCACGCCACAGCGCCACCATTCCCTAGCGGGCAGCGTTTCTC
GGCCTACATCACCGCAACACCCTGGTTCCGGGGCTCTGGCAGCCATCCCC
CAGACTCCTACTGGTGCATCAGGCAGTGTTCCTCCCCCTGCTGGCATTCC
AAACTCTGTGGCTCCACCCGGAACACCAAGCAGTGGGGGAGAGCTTGTGA
ATGGCAACAATCTGGCCGCAGCCCTTCAGAAACGCATCAATCGCAAGCGA
AAAAACCACGGAGGCTCGGCCCATGGACACCACAGTCTGACCAGTCAACA
GCAGCAGTCACATCCGCATCCTACAACTCCGCAGACACCCACGGCTACGC
CCGTGCATGTGACCGGCGACGGTTTAATAAGCGGAGCGGCCAATGATGAT
GGTGATGGATCGCAGGATGGCAAGACGCCCACGCCGAGGCAATCAGGCAG
CATGGTTACGCACCAGGACGACGTGGTCACCCGCATGAAGAACGTGGAGA
TGATCGAGCTGGGCAGGCATCGCATTAAGCCCTGGTATTTCTCACCCTAT
CCGCAAGAGCTGTGTCAAATGCCCTGCATCTACATCTGCGAGTTCTGCCT
GAAGTACAGGAAGAGCAGGAAGTGCCTGGAGAGGCACCTGTCCAAGTGCA
ATCTTAGGCATCCACCGGGAAACGAGATCTATCGCAAACATACAATTTCC
TTCTTTGAAATCGATGGACGCAAAAACAAGGTGTATGCCCAGAACTTGTG
CCTGCTTGCCAAACTCTTTCTCGACCACAAGACACTCTACTATGATACCG
ATCCGTTTCTCTTCTACGTAATGACAGAGTTCGACTCGCGCGGCTTCCAC
ATAGTAGGGTACTTCTCCAAGGAGAAGGAGAGCACAGAGGACTACAACGT
GGCCTGCATTCTCACAATGCCTCCGTATCAGCGCAAGGGCTACGGCAAGC
TGCTCATTGAGTTCAGCTACGAGTTGTCCAAGTTCGAGGGCAAGACGGGA
TCGCCGGAGAAACCATTGTCTGATCTGGGTTTGCTGTCCTATCGATCGTA
CTGGGCGCAAACCATACTGGAGATCTTTATCAGCCAAAACCCGAGCACGG
ACGGCGAAAAGCCCACTATAACTATAAACGACATCTGCGAATGCACATCC
ATCAAAAAAGAGGACGTGATCTCAACGCTGCAGAACCTGAACCTGATCAA
CTACTACAAGGGCCAGTACATCGTGTGCATCAACCGGGTTATCATCGAGC
AACACCGGCGAGCAATGGACAAGCGCAAGATCCGCATCGACTCGAAATGC
CTGCACTGGACACCCAAAGACTGGTCCAAGCGCTCCAAATGAAAGCTTTC
TAGACCAT
BS08505.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:38:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tip60-RC | 1626 | CG6121-PC | 1..1626 | 17..1642 | 8130 | 100 | Plus |
| Tip60-RA | 1626 | CG6121-PA | 1..1626 | 17..1642 | 8130 | 100 | Plus |
| Tip60-RB | 1422 | CG6121-PB | 1..1412 | 17..1428 | 7060 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:38:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tip60-RC | 1852 | CG6121-RC | 98..1723 | 17..1642 | 8130 | 100 | Plus |
| Tip60-RA | 2390 | CG6121-RA | 636..2261 | 17..1642 | 8130 | 100 | Plus |
| Tip60-RB | 2368 | CG6121-RB | 591..2002 | 17..1428 | 7060 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:38:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 4115320..4116544 | 1428..204 | 6125 | 100 | Minus |
| X | 23542271 | X | 4115002..4115214 | 1641..1429 | 1065 | 100 | Minus |
| X | 23542271 | X | 4116599..4116726 | 203..76 | 640 | 100 | Minus |
| X | 23542271 | X | 4116792..4116852 | 77..17 | 305 | 100 | Minus |
| 2R | 25286936 | 2R | 24102364..24102431 | 1025..1092 | 205 | 86.8 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:38:10 has no hits.
BS08505.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:09:25 Download gff for
BS08505.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tip60-RA | 1..1625 | 17..1641 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:39:17 Download gff for
BS08505.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tip60-RA | 591..2220 | 17..1650 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:05:47 Download gff for
BS08505.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tip60-RA | 636..2260 | 17..1641 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:38:42 Download gff for
BS08505.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tip60-RA | 591..2215 | 17..1641 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:23:41 Download gff for
BS08505.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tip60-RA | 636..2260 | 17..1641 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:23:41 Download gff for
BS08505.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 4115002..4115214 | 1429..1641 | 100 | <- | Minus |
| X | 4115320..4116544 | 204..1428 | 100 | <- | Minus |
| X | 4116599..4116725 | 77..203 | 100 | <- | Minus |
| X | 4116793..4116852 | 17..76 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:05:47 Download gff for
BS08505.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 4010632..4010758 | 77..203 | 100 | <- | Minus |
| arm_X | 4010826..4010885 | 17..76 | 100 | | Minus |
| arm_X | 4009035..4009247 | 1429..1641 | 100 | <- | Minus |
| arm_X | 4009353..4010577 | 204..1428 | 100 | <- | Minus |
BS08505.pep Sequence
Translation from 16 to 1641
> BS08505.pep
MKINHKYEFDDDVASICESTAALTEGCRLPVRMHKTDDWPLAEIVSIKEL
DGRRQFYVHYVDFNKRLDEWVNEEDLYTRKVQFPRRDGSQTGTSTGVTTP
QRHHSLAGSVSRPTSPQHPGSGALAAIPQTPTGASGSVPPPAGIPNSVAP
PGTPSSGGELVNGNNLAAALQKRINRKRKNHGGSAHGHHSLTSQQQQSHP
HPTTPQTPTATPVHVTGDGLISGAANDDGDGSQDGKTPTPRQSGSMVTHQ
DDVVTRMKNVEMIELGRHRIKPWYFSPYPQELCQMPCIYICEFCLKYRKS
RKCLERHLSKCNLRHPPGNEIYRKHTISFFEIDGRKNKVYAQNLCLLAKL
FLDHKTLYYDTDPFLFYVMTEFDSRGFHIVGYFSKEKESTEDYNVACILT
MPPYQRKGYGKLLIEFSYELSKFEGKTGSPEKPLSDLGLLSYRSYWAQTI
LEIFISQNPSTDGEKPTITINDICECTSIKKEDVISTLQNLNLINYYKGQ
YIVCINRVIIEQHRRAMDKRKIRIDSKCLHWTPKDWSKRSK*
BS08505.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:38:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tip60-PC | 541 | CG6121-PC | 1..541 | 1..541 | 2926 | 100 | Plus |
| Tip60-PA | 541 | CG6121-PA | 1..541 | 1..541 | 2926 | 100 | Plus |
| Tip60-PB | 473 | CG6121-PB | 1..470 | 1..470 | 2541 | 100 | Plus |
| mof-PA | 827 | CG3025-PA | 533..814 | 250..534 | 802 | 50.5 | Plus |
| chm-PC | 811 | CG5229-PC | 526..801 | 258..533 | 790 | 50.7 | Plus |
