Clone Sequence Records
BS08507.3prime Sequence
889 bp (888 high quality bases) assembled on 2006-01-10
> BS08507.3prime
ATGGTCTAGAAAGCTTCTATGACTGCAACTTCAAGTCTGCAAACGTTTTG
GGCACTGATTCCCCCAATTTGTCTCGCAGTTTGTTGGGCAAGGTTATTTC
ATCAGCGATGACTAAGTATTGATCATAAGGAAGCGATTCCAGCAGTACGG
CATTCGCTATGTCAAATCTTTTGGGAAAGTCGGCCGATTGGGGCCACTTG
GCAAGCTCCCACTCCAAGGTCCACCTAGCAGCGAGGTCCTTGTAGTAACC
CTCTCTTAAAAAATCCACCTTTTCCAACTTGGCCAAGTGCGCCAAGCTCG
TTTCGTGATTGGCCGAGAAATCGATAGCACGCATTAGAAGGGCACTTGTT
AGTAGGGTCCACTTGCTGTCCGGCTCAAACTCCAGAAGATCTAGGCAGGA
TTGCAGCTGCGTTTGCAGCTCCGCCAGGAGATCCTTGCTGCAACTCGTAG
TGCCGTGTGGCGGCGCAATGTAATAGGCTCCGTTTTCCGAGCCAGACAGA
GGCGAGAGGTCAACCTTCTGATCGGAGAGCCTAAGGGAGTAAGCTGAGTT
TCTTTGGTAATCGAAGTTCTGCTGACACTTCCAACTGGTTCCACGCTTGT
CCACTGGTAGCCAGAACTCCAGTAAAATCGTTTGTCCTCCCCCAACTAGC
TCAGTCTTCAATTGCTTTATATCTGGGTAGGGCTTGTCAAGGGCGAGGAC
TGCTCCATGTGACTCCAGTCGAAAAGCAGCTATCCTTGGAGCCCGATCCA
ACTGGGCGCCGCTGCCCAGCAACCAGCGCTGGTAGAACCAAGCACTGCTG
TCGTTAGGATCCGTGAAAGCAGCGGTCAGCACCATTTCAAGCTCCTTCTG
CAACTTCTCCTCACTCATGGGCCGGTCTCTCTGCTGGGT
BS08507.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:08:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12007-PA | 1548 | CG12007-RA | 678..1548 | 887..17 | 4330 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:31:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12007-RA | 1853 | CG12007-RA | 759..1630 | 887..16 | 4345 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:30:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5128845..5129716 | 887..16 | 4345 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-11 11:30:59 has no hits.
BS08507.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:42:30 Download gff for
BS08507.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12007-PA | 676..1548 | 17..889 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:42:28 Download gff for
BS08507.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12007-PA | 676..1548 | 17..889 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 07:53:00 Download gff for
BS08507.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12007-RA | 757..1635 | 10..889 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:44:06 Download gff for
BS08507.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12007-RA | 757..1635 | 10..889 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:44:06 Download gff for
BS08507.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5128843..5129721 | 10..889 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 07:53:00 Download gff for
BS08507.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 954565..955443 | 10..889 | 99 | | Minus |
BS08507.5prime Sequence
876 bp (789 high quality bases) assembled on 2006-01-10
> BS08507.5prime
GAAGTTATCAGTCGACATGCACGGACGCGTAAAAGTGAGGACCACGGAGG
AGGAGCGCGAGCGGAAGAAGAAGGAGCAGGCTCTGAAAGTCCGGGCCTAC
CGTGCAGCCATGGGAAGGATTCAGAAGAAGAGGGAGGCGGGTGAGCTGGA
CAACGAAATGCTCAGCCTGACAGTTCAGATCTTGCTGCGGAATCCGGATG
TCAGCATGCTGTGGAACATCCGCAGGGAGTGCGTGCTGGAGAAGCTGTTC
AGGCTAAAGGAAGAGGAGGCCACGTGCGAGACGCCCAGCGAGGAGAAGCC
AGAGAAGGAAAACCAAACCGGTGAGAATAAGCCGAGTGAAAAGAAGGCCG
CTGGCGAGGACAAGGCCCATTCCATTTTCACCTGCGAACTGGACCTCACC
GAGCAGTGCCTAATGGTCAACCCGAAGTCCTACAACGCCTGGCACCACCG
CTGCTGGACCCTGGAACAGAATCCCAGGGCGGACTGGCAGCAGGAGGTGA
AACTGTGCAACAAGTACCTCAAATTCGACGAGCGCAACTTCCACACCTGG
GACTACAGGCGCTATGTGACCGGCAAGGCCATGGTGCCGGCCACCCAGGA
GCTGGACTTCTGCACCGAGAAGATCAGGGCTAACTTCTCCAACTACTCCA
GCTGGCACCACCGCAGTCTCCTGCTTCCGGAGCTCTACCCCAACCAGCAG
AGAGACCGGCCCATGAGTGAGGAGAAGTTGCAGAAGGAGCTTGAAATGGT
GCTGACCGCTGCTTTCACGGATCCTAACGACAGCAGTGCTTGGTTCTACC
AGCGCTGGTTGCTGGGCAGCGGCGCCCAGTTGGATCGGGCTCCAAGGATA
GCTGCTTTTCGACTGGAGTCACATGG
BS08507.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:08:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12007-PA | 1548 | CG12007-RA | 1..860 | 17..876 | 4300 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 10:01:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12007-RA | 1853 | CG12007-RA | 82..941 | 17..876 | 4300 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 10:01:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5128168..5129027 | 17..876 | 4300 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 10:01:49 has no hits.
BS08507.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:42:31 Download gff for
BS08507.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12007-PA | 1..860 | 17..876 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:42:30 Download gff for
BS08507.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12007-PA | 1..860 | 17..876 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:25:57 Download gff for
BS08507.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12007-RA | 74..941 | 8..876 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:54:54 Download gff for
BS08507.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12007-RA | 74..941 | 8..876 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:54:54 Download gff for
BS08507.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5128160..5129027 | 8..876 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:25:57 Download gff for
BS08507.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 953882..954749 | 8..876 | 99 | | Plus |
BS08507.complete Sequence
1580 bp (1580 high quality bases) assembled on 2006-01-18
GenBank Submission: FJ636187
> BS08507.complete
GAAGTTATCAGTCGACATGCACGGACGCGTAAAAGTGAGGACCACGGAGG
AGGAGCGCGAGCGGAAGAAGAAGGAGCAGGCTCTGAAAGTCCGGGCCTAC
CGTGCAGCCATGGGAAGGATTCAGAAGAAGAGGGAGGCGGGTGAGCTGGA
CAACGAAATGCTCAGCCTGACAGTTCAGATCTTGCTGCGGAATCCGGATG
TCAGCATGCTGTGGAACATCCGCAGGGAGTGCGTGCTGGAGAAGCTGTTC
AGGCTAAAGGAAGAGGAGGCCACGTGCGAGACGCCCAGCGAGGAGAAGCC
AGAGAAGGAAAACCAAACCGGTGAGAATAAGCCGAGTGAAAAGAAGGCCG
CTGGCGAGGACAAGGCCCATTCCATTTTCACCTGCGAACTGGACCTCACC
GAGCAGTGCCTAATGGTCAACCCGAAGTCCTACAACGCCTGGCACCACCG
CTGCTGGACCCTGGAACAGAATCCCAGGGCGGACTGGCAGCAGGAGGTGA
AACTGTGCAACAAGTACCTCAAATTCGACGAGCGCAACTTCCACACCTGG
GACTACAGGCGCTATGTGACCGGCAAGGCCATGGTGCCGGCCACCCAGGA
GCTGGACTTCTGCACCGAGAAGATCAGGGCTAACTTCTCCAACTACTCCA
GCTGGCACCACCGCAGTCTCCTGCTTCCGGAGCTCTACCCCAACCAGCAG
AGAGACCGGCCCATGAGTGAGGAGAAGTTGCAGAAGGAGCTTGAAATGGT
GCTGACCGCTGCTTTCACGGATCCTAACGACAGCAGTGCTTGGTTCTACC
AGCGCTGGTTGCTGGGCAGCGGCGCCCAGTTGGATCGGGCTCCAAGGATA
GCTGCTTTTCGACTGGAGTCACATGGAGCAGTCCTCGCCCTTGACAAGCC
CTACCCAGATATAAAGCAATTGAAGACTGAGCTAGTTGGGGGAGGACAAA
CGATTTTACTGGAGTTCTGGCTACCAGTGGACAAGCGTGGAACCAGTTGG
AAGTGTCAGCAGAACTTCGATTACCAAAGAAACTCAGCTTACTCCCTTAG
GCTCTCCGATCAGAAGGTTGACCTCTCGCCTCTGTCTGGCTCGGAAAACG
GAGCCTATTACATTGCGCCGCCACACGGCACTACGAGTTGCAGCAAGGAT
CTCCTGGCGGAGCTGCAAACGCAGCTGCAATCCTGCCTAGATCTTCTGGA
GTTTGAGCCGGACAGCAAGTGGACCCTACTAACAAGTGCCCTTCTAATGC
GTGCTATCGATTTCTCGGCCAATCACGAAACGAGCTTGGCGCACTTGGCC
AAGTTGGAAAAGGTGGATTTTTTAAGAGAGGGTTACTACAAGGACCTCGC
TGCTAGGTGGACCTTGGAGTGGGAGCTTGCCAAGTGGCCCCAATCGGCCG
ACTTTCCCAAAAGATTTGACATAGCGAATGCCGTACTGCTGGAATCGCTT
CCTTATGATCAATACTTAGTCATCGCTGATGAAATAACCTTGCCCAACAA
ACTGCGAGACAAATTGGGGGAATCAGTGCCCAAAACGTTTGCAGACTTGA
AGTTGCAGTCATAGAAGCTTTCTAGACCAT
BS08507.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:05:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12007-RA | 1548 | CG12007-PA | 1..1548 | 17..1564 | 7725 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:05:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12007-RA | 1853 | CG12007-RA | 82..1630 | 17..1565 | 7730 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:05:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5128168..5129716 | 17..1565 | 7730 | 99.9 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:05:03 has no hits.
BS08507.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:03:00 Download gff for
BS08507.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12007-RA | 1..1548 | 17..1564 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:40:53 Download gff for
BS08507.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12007-RA | 73..1634 | 8..1571 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:48:12 Download gff for
BS08507.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12007-RA | 82..1629 | 17..1564 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:03:01 Download gff for
BS08507.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12007-RA | 73..1634 | 8..1571 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:59:38 Download gff for
BS08507.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12007-RA | 82..1629 | 17..1564 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:59:38 Download gff for
BS08507.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5128168..5129715 | 17..1564 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:48:12 Download gff for
BS08507.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 953890..955437 | 17..1564 | 99 | | Plus |
BS08507.pep Sequence
Translation from 16 to 1563
> BS08507.pep
MHGRVKVRTTEEERERKKKEQALKVRAYRAAMGRIQKKREAGELDNEMLS
LTVQILLRNPDVSMLWNIRRECVLEKLFRLKEEEATCETPSEEKPEKENQ
TGENKPSEKKAAGEDKAHSIFTCELDLTEQCLMVNPKSYNAWHHRCWTLE
QNPRADWQQEVKLCNKYLKFDERNFHTWDYRRYVTGKAMVPATQELDFCT
EKIRANFSNYSSWHHRSLLLPELYPNQQRDRPMSEEKLQKELEMVLTAAF
TDPNDSSAWFYQRWLLGSGAQLDRAPRIAAFRLESHGAVLALDKPYPDIK
QLKTELVGGGQTILLEFWLPVDKRGTSWKCQQNFDYQRNSAYSLRLSDQK
VDLSPLSGSENGAYYIAPPHGTTSCSKDLLAELQTQLQSCLDLLEFEPDS
KWTLLTSALLMRAIDFSANHETSLAHLAKLEKVDFLREGYYKDLAARWTL
EWELAKWPQSADFPKRFDIANAVLLESLPYDQYLVIADEITLPNKLRDKL
GESVPKTFADLKLQS*
BS08507.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:21:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12007-PA | 515 | CG12007-PA | 1..515 | 1..515 | 2728 | 100 | Plus |
