Clone BS08509 Report

Search the DGRC for BS08509

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:85
Well:9
Vector:pDNR-Dual
Associated Gene/TranscriptAP-1mu-RA
Protein status:BS08509.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08509.3prime Sequence

948 bp (835 high quality bases) assembled on 2006-01-10

> BS08509.3prime
ATGGTCTAGAAAGCTTTCAATTGGTGCGTAGCTGATAGTCGCCGTTCTGC
GTGATGTACCGCACCCATGGCAGCGCCTGATAGCCGCTCTTCTCGATGAT
CTTCAGATAGCGCACCTGGATGCCCGACGTGGTAAAGTAGGGAATCTCGA
AGCGCACCTGAATTGGCGGCTTGCCCTCCGTATTGTCCTCGCTTTCCACG
CTCGGCAGACCGAAATGTGCCCGCATTAGATACTCCTTGCCACCCGGGAA
CGATTTGATCGTCCAGATGATTGCGTTCTGCTCCGGTGCGTACTTGCAGC
TTCCAATGGTGGTCTTGAACTTGGGTGAGTCCGCGTCGGCGGGCACTGGT
ATGACGATTTCCACGTTGTTGGCCGTCGATCTTCGCTTGAACTGAGACTT
CGCCTTAATCATGTACTCCACACGGGAGTGGGCATGCCGCTCGATCACTG
ATTCGATCCAAATCAGGGGTTTGACATGCGTGTTCAGACGATAGGACATC
AGTTCGAACTCGCCGTCCGGAGGAATGAACGAGATTGTCCGGTCATTCTC
GAAGCGTGACAACCGCACGCACTGGTGGAACTTGACGTCCTCCAGCTCTA
CGGACTTTGACTTGCCGCGGCCCGTGCTCTCGAACAGAACCTTGTCGTTG
AGACCCAGTCGCAGCTCTGGCATTCCCGACAAGTAGACGCGCATCTTAAT
GGCGCCCACGATCTCGCTGCGCAGCACATTGCCATTGGCGTTTGCGAGAA
GATTCACCGACTCGATAACGTCCAGGAACACCTCGTTCTTGCGATACTTA
ATGCCCTCGGACCGCCAGGATACTGCATTGGTCACGGCCACCGGGATGCG
GGGCTGTAGCTCCAGCTTATGACCCTCCTGCGTAATGTATTCCTGAAGAT
TTTTCGAGTCGGTGGTCTGCGGGTAGCAAAAGTCGAGCAATTCATCCA

BS08509.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:08:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG9388-PA 1281 AP-47-RA 350..1281 948..17 4585 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:59:32
Subject Length Description Subject Range Query Range Score Percent Strand
AP-1mu-RA 1755 CG9388-RA 626..1560 948..14 4630 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:59:24
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9558426..9558900 474..948 2330 99.4 Plus
3R 32079331 3R 9557907..9558368 14..475 2310 100 Plus
Blast to na_te.dros performed on 2015-02-06 10:59:28 has no hits.

BS08509.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:42:35 Download gff for BS08509.3prime
Subject Subject Range Query Range Percent Splice Strand
AP-47-PA 351..1281 17..947 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:42:34 Download gff for BS08509.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9388-PA 351..1281 17..947 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:31:50 Download gff for BS08509.3prime
Subject Subject Range Query Range Percent Splice Strand
AP-1mu-RA 627..1560 14..947 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:41:33 Download gff for BS08509.3prime
Subject Subject Range Query Range Percent Splice Strand
AP-1mu-RA 627..1560 14..947 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:41:33 Download gff for BS08509.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 9557907..9558368 14..475 100 <- Plus
3R 9558428..9558899 476..947 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:31:50 Download gff for BS08509.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5383629..5384090 14..475 100 <- Plus
arm_3R 5384150..5384621 476..947 99   Plus

BS08509.5prime Sequence

855 bp (807 high quality bases) assembled on 2006-01-10

> BS08509.5prime
GAAGTTATCAGTCGACATGTCTTCGTCGGCCATTTTCGTTCTGGACGTGA
AGGGCAAGGTGCTGATATCGCGGAACTACCGCGGTGACAACATCGACATG
GCCGTGATCGACAAATTCATGCCATTGCTGATGGAGCGCGAGGAGGAGGG
CCTAATCACTCCGATCCTTCAGACGGCGGAGACTACATTTGCCTACATCA
AAACGAACAATCTTTATATCGTATCCACGACGCCGCGCAATAAGAACGTT
AATATCGCTCTGGTCTTCGTCTTTCTGCACAAGATCGCGCAGGTCTTTGT
GGAATACTTCAAGGAGCTGGAGGAGGAGTCCATTCGGGACAATTTCGTGA
TCATCTACGAGCTGCTGGATGAATTGCTCGACTTTGGCTACCCGCAGACC
ACCGACTCGAAAATTCTACAGGAATACATTACGCAGGAGGGTCATAAGCT
GGAGCTACAGCCCCGCATCCCGGTGGCCGTGACCAATGCAGTATCCTGGC
GGTCCGAGGGCATTAAGTATCGCAAGAACGAGGTGTTCCTGGACGTTATC
GAGTCGGTGAATCTTCTCGCAAACGCCAATGGCAATGTGCTGCGCAGCGA
GATCGTGGGCGCCATTAAGATGCGCGTCTACTTGTCGGGAATGCCAGAGC
TGCGACTGGGTCTCAACGACAAGGTTCTGTTCGAGAGCACGGGCCGCGGC
AAGTCAAAGTCCGTAGAGCTGGAGGACGTCAAGTTCCACCAGTGCGTGCG
GTTGTCACGCTTCGAGAATGGACCGGACAATCTCGTTCATTCCTCCGGAC
GGCGAGTTCGAACTGATGTCCTATCGTCTGAACACGCATGTCAAACCCCT
GATTT

BS08509.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:08:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG9388-PA 1281 AP-47-RA 1..754 17..770 3770 100 Plus
CG9388-PA 1281 AP-47-RA 754..838 771..855 425 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:51:30
Subject Length Description Subject Range Query Range Score Percent Strand
AP-1mu-RA 1755 CG9388-RA 274..1114 14..855 4185 99.9 Plus
AP-2mu-RC 1976 CG7057-RC 461..525 344..408 235 90.8 Plus
AP-2mu-RB 2025 CG7057-RB 461..525 344..408 235 90.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 09:51:23
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9558426..9559252 841..14 4090 99.9 Minus
3R 32079331 3R 22462983..22463047 344..408 235 90.8 Plus
Blast to na_te.dros performed on 2015-02-02 09:51:27 has no hits.

BS08509.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:42:36 Download gff for BS08509.5prime
Subject Subject Range Query Range Percent Splice Strand
AP-47-PA 1..838 17..855 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:42:35 Download gff for BS08509.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9388-PA 1..838 17..855 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:25:23 Download gff for BS08509.5prime
Subject Subject Range Query Range Percent Splice Strand
AP-1mu-RA 271..1114 10..855 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:34:29 Download gff for BS08509.5prime
Subject Subject Range Query Range Percent Splice Strand
AP-1mu-RA 271..1114 10..855 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:34:29 Download gff for BS08509.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 9558353..9558368 840..855 100 <- Minus
3R 9558428..9559255 10..839 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:25:23 Download gff for BS08509.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5384075..5384090 840..855 100 <- Minus
arm_3R 5384150..5384977 10..839 99   Minus

BS08509.complete Sequence

1313 bp (1313 high quality bases) assembled on 2006-01-18

GenBank Submission: FJ636188

> BS08509.complete
GAAGTTATCAGTCGACATGTCTTCGTCGGCCATTTTCGTTCTGGACGTGA
AGGGCAAGGTGCTGATATCGCGGAACTACCGCGGTGACAACATCGACATG
GCCGTGATCGACAAATTCATGCCATTGCTGATGGAGCGCGAGGAGGAGGG
CCTAATCACTCCGATCCTTCAGACGGCGGAGACTACATTTGCCTACATCA
AAACGAACAATCTTTATATCGTATCCACGACGCCGCGCAATAAGAACGTT
AATATCGCTCTGGTCTTCGTCTTTCTGCACAAGATCGCGCAGGTCTTTGT
GGAATACTTCAAGGAGCTGGAGGAGGAGTCCATTCGGGACAATTTCGTGA
TCATCTACGAGCTGCTGGATGAATTGCTCGACTTTGGCTACCCGCAGACC
ACCGACTCGAAAATTCTACAGGAATACATTACGCAGGAGGGTCATAAGCT
GGAGCTACAGCCCCGCATCCCGGTGGCCGTGACCAATGCAGTATCCTGGC
GGTCCGAGGGCATTAAGTATCGCAAGAACGAGGTGTTCCTGGACGTTATC
GAGTCGGTGAATCTTCTCGCAAACGCCAATGGCAATGTGCTGCGCAGCGA
GATCGTGGGCGCCATTAAGATGCGCGTCTACTTGTCGGGAATGCCAGAGC
TGCGACTGGGTCTCAACGACAAGGTTCTGTTCGAGAGCACGGGCCGCGGC
AAGTCAAAGTCCGTAGAGCTGGAGGACGTCAAGTTCCACCAGTGCGTGCG
GTTGTCACGCTTCGAGAATGACCGGACAATCTCGTTCATTCCTCCGGACG
GCGAGTTCGAACTGATGTCCTATCGTCTGAACACGCATGTCAAACCCCTG
ATTTGGATCGAATCAGTGATCGAGCGGCATGCCCACTCCCGTGTGGAGTA
CATGATTAAGGCGAAGTCTCAGTTCAAGCGAAGATCGACGGCCAACAACG
TGGAAATCGTCATACCAGTGCCCGCCGACGCGGACTCACCCAAGTTCAAG
ACCACCATTGGAAGCTGCAAGTACGCACCGGAGCAGAACGCAATCATCTG
GACGATCAAATCGTTCCCGGGTGGCAAGGAGTATCTAATGCGGGCACATT
TCGGTCTGCCGAGCGTGGAAAGCGAGGACAATACGGAGGGCAAGCCGCCA
ATTCAGGTGCGCTTCGAGATTCCCTACTTTACCACGTCGGGCATCCAGGT
GCGCTATCTGAAGATCATCGAGAAGAGCGGCTATCAGGCGCTGCCATGGG
TGCGGTACATCACGCAGAACGGCGACTATCAGCTACGCACCAATTGAAAG
CTTTCTAGACCAT

BS08509.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:29:13
Subject Length Description Subject Range Query Range Score Percent Strand
AP-1mu-RA 1281 CG9388-PA 1..1281 17..1297 6405 100 Plus
AP-2mu-RC 1314 CG7057-PC 313..377 344..408 235 90.8 Plus
AP-2mu-RB 1314 CG7057-PB 313..377 344..408 235 90.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:29:14
Subject Length Description Subject Range Query Range Score Percent Strand
AP-1mu-RA 1755 CG9388-RA 274..1560 14..1300 6435 100 Plus
AP-2mu-RC 1976 CG7057-RC 461..525 344..408 235 90.8 Plus
AP-2mu-RB 2025 CG7057-RB 461..525 344..408 235 90.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:29:12
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9558426..9559252 840..14 4135 100 Minus
3R 32079331 3R 9557907..9558368 1300..839 2310 100 Minus
3R 32079331 3R 22462983..22463047 344..408 235 90.8 Plus
Blast to na_te.dros performed on 2014-11-26 22:29:12 has no hits.

BS08509.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:03:02 Download gff for BS08509.complete
Subject Subject Range Query Range Percent Splice Strand
AP-47-RA 1..1281 17..1297 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:40:55 Download gff for BS08509.complete
Subject Subject Range Query Range Percent Splice Strand
AP-47-RA 269..1558 10..1300 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:59:44 Download gff for BS08509.complete
Subject Subject Range Query Range Percent Splice Strand
AP-1mu-RA 277..1556 17..1296 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:03:02 Download gff for BS08509.complete
Subject Subject Range Query Range Percent Splice Strand
AP-47-RA 269..1558 10..1300 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:02:32 Download gff for BS08509.complete
Subject Subject Range Query Range Percent Splice Strand
AP-1mu-RA 277..1556 17..1296 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:02:32 Download gff for BS08509.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9557911..9558368 839..1296 100 <- Minus
3R 9558428..9559249 17..838 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:59:44 Download gff for BS08509.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5383633..5384090 839..1296 100 <- Minus
arm_3R 5384150..5384971 17..838 100   Minus

BS08509.pep Sequence

Translation from 16 to 1296

> BS08509.pep
MSSSAIFVLDVKGKVLISRNYRGDNIDMAVIDKFMPLLMEREEEGLITPI
LQTAETTFAYIKTNNLYIVSTTPRNKNVNIALVFVFLHKIAQVFVEYFKE
LEEESIRDNFVIIYELLDELLDFGYPQTTDSKILQEYITQEGHKLELQPR
IPVAVTNAVSWRSEGIKYRKNEVFLDVIESVNLLANANGNVLRSEIVGAI
KMRVYLSGMPELRLGLNDKVLFESTGRGKSKSVELEDVKFHQCVRLSRFE
NDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIERHAHSRVEYMIKAK
SQFKRRSTANNVEIVIPVPADADSPKFKTTIGSCKYAPEQNAIIWTIKSF
PGGKEYLMRAHFGLPSVESEDNTEGKPPIQVRFEIPYFTTSGIQVRYLKI
IEKSGYQALPWVRYITQNGDYQLRTN*

BS08509.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:21:50
Subject Length Description Subject Range Query Range Score Percent Strand
AP-1mu-PA 426 CG9388-PA 1..426 1..426 2184 100 Plus
AP-2mu-PC 437 CG7057-PC 5..436 6..424 852 42.2 Plus
AP-2mu-PB 437 CG7057-PB 5..436 6..424 852 42.2 Plus
AP-2mu-PA 437 CG7057-PA 5..436 6..424 852 42.2 Plus
cm-PB 415 CG3035-PB 4..414 5..424 450 27.4 Plus