Clone Sequence Records
BS08509.3prime Sequence
948 bp (835 high quality bases) assembled on 2006-01-10
> BS08509.3prime
ATGGTCTAGAAAGCTTTCAATTGGTGCGTAGCTGATAGTCGCCGTTCTGC
GTGATGTACCGCACCCATGGCAGCGCCTGATAGCCGCTCTTCTCGATGAT
CTTCAGATAGCGCACCTGGATGCCCGACGTGGTAAAGTAGGGAATCTCGA
AGCGCACCTGAATTGGCGGCTTGCCCTCCGTATTGTCCTCGCTTTCCACG
CTCGGCAGACCGAAATGTGCCCGCATTAGATACTCCTTGCCACCCGGGAA
CGATTTGATCGTCCAGATGATTGCGTTCTGCTCCGGTGCGTACTTGCAGC
TTCCAATGGTGGTCTTGAACTTGGGTGAGTCCGCGTCGGCGGGCACTGGT
ATGACGATTTCCACGTTGTTGGCCGTCGATCTTCGCTTGAACTGAGACTT
CGCCTTAATCATGTACTCCACACGGGAGTGGGCATGCCGCTCGATCACTG
ATTCGATCCAAATCAGGGGTTTGACATGCGTGTTCAGACGATAGGACATC
AGTTCGAACTCGCCGTCCGGAGGAATGAACGAGATTGTCCGGTCATTCTC
GAAGCGTGACAACCGCACGCACTGGTGGAACTTGACGTCCTCCAGCTCTA
CGGACTTTGACTTGCCGCGGCCCGTGCTCTCGAACAGAACCTTGTCGTTG
AGACCCAGTCGCAGCTCTGGCATTCCCGACAAGTAGACGCGCATCTTAAT
GGCGCCCACGATCTCGCTGCGCAGCACATTGCCATTGGCGTTTGCGAGAA
GATTCACCGACTCGATAACGTCCAGGAACACCTCGTTCTTGCGATACTTA
ATGCCCTCGGACCGCCAGGATACTGCATTGGTCACGGCCACCGGGATGCG
GGGCTGTAGCTCCAGCTTATGACCCTCCTGCGTAATGTATTCCTGAAGAT
TTTTCGAGTCGGTGGTCTGCGGGTAGCAAAAGTCGAGCAATTCATCCA
BS08509.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:08:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9388-PA | 1281 | AP-47-RA | 350..1281 | 948..17 | 4585 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:59:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
AP-1mu-RA | 1755 | CG9388-RA | 626..1560 | 948..14 | 4630 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:59:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9558426..9558900 | 474..948 | 2330 | 99.4 | Plus |
3R | 32079331 | 3R | 9557907..9558368 | 14..475 | 2310 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-06 10:59:28 has no hits.
BS08509.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:42:35 Download gff for
BS08509.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AP-47-PA | 351..1281 | 17..947 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:42:34 Download gff for
BS08509.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9388-PA | 351..1281 | 17..947 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:31:50 Download gff for
BS08509.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AP-1mu-RA | 627..1560 | 14..947 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:41:33 Download gff for
BS08509.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AP-1mu-RA | 627..1560 | 14..947 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:41:33 Download gff for
BS08509.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9557907..9558368 | 14..475 | 100 | <- | Plus |
3R | 9558428..9558899 | 476..947 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:31:50 Download gff for
BS08509.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5383629..5384090 | 14..475 | 100 | <- | Plus |
arm_3R | 5384150..5384621 | 476..947 | 99 | | Plus |
BS08509.5prime Sequence
855 bp (807 high quality bases) assembled on 2006-01-10
> BS08509.5prime
GAAGTTATCAGTCGACATGTCTTCGTCGGCCATTTTCGTTCTGGACGTGA
AGGGCAAGGTGCTGATATCGCGGAACTACCGCGGTGACAACATCGACATG
GCCGTGATCGACAAATTCATGCCATTGCTGATGGAGCGCGAGGAGGAGGG
CCTAATCACTCCGATCCTTCAGACGGCGGAGACTACATTTGCCTACATCA
AAACGAACAATCTTTATATCGTATCCACGACGCCGCGCAATAAGAACGTT
AATATCGCTCTGGTCTTCGTCTTTCTGCACAAGATCGCGCAGGTCTTTGT
GGAATACTTCAAGGAGCTGGAGGAGGAGTCCATTCGGGACAATTTCGTGA
TCATCTACGAGCTGCTGGATGAATTGCTCGACTTTGGCTACCCGCAGACC
ACCGACTCGAAAATTCTACAGGAATACATTACGCAGGAGGGTCATAAGCT
GGAGCTACAGCCCCGCATCCCGGTGGCCGTGACCAATGCAGTATCCTGGC
GGTCCGAGGGCATTAAGTATCGCAAGAACGAGGTGTTCCTGGACGTTATC
GAGTCGGTGAATCTTCTCGCAAACGCCAATGGCAATGTGCTGCGCAGCGA
GATCGTGGGCGCCATTAAGATGCGCGTCTACTTGTCGGGAATGCCAGAGC
TGCGACTGGGTCTCAACGACAAGGTTCTGTTCGAGAGCACGGGCCGCGGC
AAGTCAAAGTCCGTAGAGCTGGAGGACGTCAAGTTCCACCAGTGCGTGCG
GTTGTCACGCTTCGAGAATGGACCGGACAATCTCGTTCATTCCTCCGGAC
GGCGAGTTCGAACTGATGTCCTATCGTCTGAACACGCATGTCAAACCCCT
GATTT
BS08509.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:08:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9388-PA | 1281 | AP-47-RA | 1..754 | 17..770 | 3770 | 100 | Plus |
CG9388-PA | 1281 | AP-47-RA | 754..838 | 771..855 | 425 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:51:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
AP-1mu-RA | 1755 | CG9388-RA | 274..1114 | 14..855 | 4185 | 99.9 | Plus |
AP-2mu-RC | 1976 | CG7057-RC | 461..525 | 344..408 | 235 | 90.8 | Plus |
AP-2mu-RB | 2025 | CG7057-RB | 461..525 | 344..408 | 235 | 90.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 09:51:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9558426..9559252 | 841..14 | 4090 | 99.9 | Minus |
3R | 32079331 | 3R | 22462983..22463047 | 344..408 | 235 | 90.8 | Plus |
Blast to na_te.dros performed on 2015-02-02 09:51:27 has no hits.
BS08509.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:42:36 Download gff for
BS08509.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AP-47-PA | 1..838 | 17..855 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:42:35 Download gff for
BS08509.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9388-PA | 1..838 | 17..855 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:25:23 Download gff for
BS08509.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AP-1mu-RA | 271..1114 | 10..855 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:34:29 Download gff for
BS08509.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AP-1mu-RA | 271..1114 | 10..855 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:34:29 Download gff for
BS08509.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9558353..9558368 | 840..855 | 100 | <- | Minus |
3R | 9558428..9559255 | 10..839 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:25:23 Download gff for
BS08509.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5384075..5384090 | 840..855 | 100 | <- | Minus |
arm_3R | 5384150..5384977 | 10..839 | 99 | | Minus |
BS08509.complete Sequence
1313 bp (1313 high quality bases) assembled on 2006-01-18
GenBank Submission: FJ636188
> BS08509.complete
GAAGTTATCAGTCGACATGTCTTCGTCGGCCATTTTCGTTCTGGACGTGA
AGGGCAAGGTGCTGATATCGCGGAACTACCGCGGTGACAACATCGACATG
GCCGTGATCGACAAATTCATGCCATTGCTGATGGAGCGCGAGGAGGAGGG
CCTAATCACTCCGATCCTTCAGACGGCGGAGACTACATTTGCCTACATCA
AAACGAACAATCTTTATATCGTATCCACGACGCCGCGCAATAAGAACGTT
AATATCGCTCTGGTCTTCGTCTTTCTGCACAAGATCGCGCAGGTCTTTGT
GGAATACTTCAAGGAGCTGGAGGAGGAGTCCATTCGGGACAATTTCGTGA
TCATCTACGAGCTGCTGGATGAATTGCTCGACTTTGGCTACCCGCAGACC
ACCGACTCGAAAATTCTACAGGAATACATTACGCAGGAGGGTCATAAGCT
GGAGCTACAGCCCCGCATCCCGGTGGCCGTGACCAATGCAGTATCCTGGC
GGTCCGAGGGCATTAAGTATCGCAAGAACGAGGTGTTCCTGGACGTTATC
GAGTCGGTGAATCTTCTCGCAAACGCCAATGGCAATGTGCTGCGCAGCGA
GATCGTGGGCGCCATTAAGATGCGCGTCTACTTGTCGGGAATGCCAGAGC
TGCGACTGGGTCTCAACGACAAGGTTCTGTTCGAGAGCACGGGCCGCGGC
AAGTCAAAGTCCGTAGAGCTGGAGGACGTCAAGTTCCACCAGTGCGTGCG
GTTGTCACGCTTCGAGAATGACCGGACAATCTCGTTCATTCCTCCGGACG
GCGAGTTCGAACTGATGTCCTATCGTCTGAACACGCATGTCAAACCCCTG
ATTTGGATCGAATCAGTGATCGAGCGGCATGCCCACTCCCGTGTGGAGTA
CATGATTAAGGCGAAGTCTCAGTTCAAGCGAAGATCGACGGCCAACAACG
TGGAAATCGTCATACCAGTGCCCGCCGACGCGGACTCACCCAAGTTCAAG
ACCACCATTGGAAGCTGCAAGTACGCACCGGAGCAGAACGCAATCATCTG
GACGATCAAATCGTTCCCGGGTGGCAAGGAGTATCTAATGCGGGCACATT
TCGGTCTGCCGAGCGTGGAAAGCGAGGACAATACGGAGGGCAAGCCGCCA
ATTCAGGTGCGCTTCGAGATTCCCTACTTTACCACGTCGGGCATCCAGGT
GCGCTATCTGAAGATCATCGAGAAGAGCGGCTATCAGGCGCTGCCATGGG
TGCGGTACATCACGCAGAACGGCGACTATCAGCTACGCACCAATTGAAAG
CTTTCTAGACCAT
BS08509.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:29:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
AP-1mu-RA | 1281 | CG9388-PA | 1..1281 | 17..1297 | 6405 | 100 | Plus |
AP-2mu-RC | 1314 | CG7057-PC | 313..377 | 344..408 | 235 | 90.8 | Plus |
AP-2mu-RB | 1314 | CG7057-PB | 313..377 | 344..408 | 235 | 90.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:29:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
AP-1mu-RA | 1755 | CG9388-RA | 274..1560 | 14..1300 | 6435 | 100 | Plus |
AP-2mu-RC | 1976 | CG7057-RC | 461..525 | 344..408 | 235 | 90.8 | Plus |
AP-2mu-RB | 2025 | CG7057-RB | 461..525 | 344..408 | 235 | 90.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:29:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9558426..9559252 | 840..14 | 4135 | 100 | Minus |
3R | 32079331 | 3R | 9557907..9558368 | 1300..839 | 2310 | 100 | Minus |
3R | 32079331 | 3R | 22462983..22463047 | 344..408 | 235 | 90.8 | Plus |
Blast to na_te.dros performed on 2014-11-26 22:29:12 has no hits.
BS08509.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:03:02 Download gff for
BS08509.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AP-47-RA | 1..1281 | 17..1297 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:40:55 Download gff for
BS08509.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AP-47-RA | 269..1558 | 10..1300 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:59:44 Download gff for
BS08509.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AP-1mu-RA | 277..1556 | 17..1296 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:03:02 Download gff for
BS08509.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AP-47-RA | 269..1558 | 10..1300 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:02:32 Download gff for
BS08509.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AP-1mu-RA | 277..1556 | 17..1296 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:02:32 Download gff for
BS08509.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9557911..9558368 | 839..1296 | 100 | <- | Minus |
3R | 9558428..9559249 | 17..838 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:59:44 Download gff for
BS08509.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5383633..5384090 | 839..1296 | 100 | <- | Minus |
arm_3R | 5384150..5384971 | 17..838 | 100 | | Minus |
BS08509.pep Sequence
Translation from 16 to 1296
> BS08509.pep
MSSSAIFVLDVKGKVLISRNYRGDNIDMAVIDKFMPLLMEREEEGLITPI
LQTAETTFAYIKTNNLYIVSTTPRNKNVNIALVFVFLHKIAQVFVEYFKE
LEEESIRDNFVIIYELLDELLDFGYPQTTDSKILQEYITQEGHKLELQPR
IPVAVTNAVSWRSEGIKYRKNEVFLDVIESVNLLANANGNVLRSEIVGAI
KMRVYLSGMPELRLGLNDKVLFESTGRGKSKSVELEDVKFHQCVRLSRFE
NDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIERHAHSRVEYMIKAK
SQFKRRSTANNVEIVIPVPADADSPKFKTTIGSCKYAPEQNAIIWTIKSF
PGGKEYLMRAHFGLPSVESEDNTEGKPPIQVRFEIPYFTTSGIQVRYLKI
IEKSGYQALPWVRYITQNGDYQLRTN*
BS08509.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:21:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
AP-1mu-PA | 426 | CG9388-PA | 1..426 | 1..426 | 2184 | 100 | Plus |
AP-2mu-PC | 437 | CG7057-PC | 5..436 | 6..424 | 852 | 42.2 | Plus |
AP-2mu-PB | 437 | CG7057-PB | 5..436 | 6..424 | 852 | 42.2 | Plus |
AP-2mu-PA | 437 | CG7057-PA | 5..436 | 6..424 | 852 | 42.2 | Plus |
cm-PB | 415 | CG3035-PB | 4..414 | 5..424 | 450 | 27.4 | Plus |