Clone BS08511 Report

Search the DGRC for BS08511

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:85
Well:11
Vector:pDNR-Dual
Associated Gene/TranscriptmRpL1-RA
Protein status:BS08511.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08511.3prime Sequence

911 bp (833 high quality bases) assembled on 2006-01-10

> BS08511.3prime
ATGGTCTAGAAAGCTTCTAATTGGAGGCAACTGCTTCTTGGGGTTCCGCC
GGCTCTGTCTGCTTCTTGGCCCCATCCCTTTTCACCTTCGCCGTGCTCTT
GTCCCACATCTCTGGAACGTAGACAAAGGGATCGATTTTCAGCTGCTCAC
TGCTTGGCGGGCTCTTCAGCAGGACACGTGTAATGAAACGTCCCTCGCGC
TTGGGCCTCATAGTGTTAATATCCTGCAGTAGGAACTTGATGTTCTCCTC
AAGCTTCTGGACATCCATGTCCAAAGTGCCCACACTGGCGGTGATCAGGC
CAAAGTTTTGCTGGTACTCATCCTTGGCTGCACTGTAACTAATGCCGCTG
GAGAATTTGACGATCATCTCGGCCAGGTTGGTGCCCAGCGTCTCGCTCTT
TGGATTTGGGAACTTGCGTTTCATCAGGCCTCGCAGGGCCACCAGCTCGG
CCAGTATATTCGGATGGGCAATGACGTACTGGTAGTCGGAGAGCAGCAGC
TCGCCGCTGGTAATATCCTTAATGAGCTCCACGCCGCCGACTAGCGAGGC
GCCAGCTTCCCTGGCCTCCAGGACTTCATTATTTCCCTTGGTGAAAACTA
TGATCTTCCGCTCCTCGCCGTGGTCAAACTTGTGTGGAATCATGGCCATG
CGCTGGAAGTTATCCACAAAACGTGTGATCTTCTCCGCCTGCATGTTGAG
TTCAATATCCAAATTGAGGGGAGCATTGGGTACGTTGTACATGCTGGGAT
GATGCGTCTCCCGATGGCACTGGATAGCTTCCTGCACCGAGTACACTGGC
CAGCGGTAGTAGCGCCCCACATAGCAGTCATCTTTGGGCACCTGTTTCCA
GGAGTCATCCACATGTTTGTCCGCCCGTTTCACATTGATTTTCTTGTTGC
GCTGGGTGTGC

BS08511.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:08:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG7494-PA 1065 mRpL1-RA 171..1065 911..17 4450 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:52:53
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL1-RA 1220 CG7494-RA 243..1137 911..17 4460 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:52:46
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8302124..8302687 580..17 2820 100 Minus
3R 32079331 3R 8301757..8302066 890..581 1550 100 Minus
Blast to na_te.dros performed on 2015-02-11 23:52:49 has no hits.

BS08511.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:42:39 Download gff for BS08511.3prime
Subject Subject Range Query Range Percent Splice Strand
mRpL1-PA 171..1065 17..911 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:42:40 Download gff for BS08511.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7494-PA 171..1065 17..911 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:38:16 Download gff for BS08511.3prime
Subject Subject Range Query Range Percent Splice Strand
mRpL1-RA 243..1139 11..911 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:48:32 Download gff for BS08511.3prime
Subject Subject Range Query Range Percent Splice Strand
mRpL1-RA 243..1139 11..911 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:48:32 Download gff for BS08511.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 8301757..8302066 581..890 100 -> Minus
3R 8301682..8301702 891..911 95 -> Minus
3R 8302124..8302689 11..580 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:38:16 Download gff for BS08511.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4127404..4127424 891..911 95 -> Minus
arm_3R 4127479..4127788 581..890 100 -> Minus
arm_3R 4127846..4128411 11..580 99   Minus

BS08511.5prime Sequence

850 bp (778 high quality bases) assembled on 2006-01-10

> BS08511.5prime
GAAGTTATCAGTCGACATGCAGTCCATTCTGTCTTCAATGAGGGCACTGG
CCCTGCGCCAGAGCACGGTGGAGCCCCTCCGCCTGCTGCATCTTTCCGCC
GTGAGCGAGGCGGCCCGTAAAGGAACTCGGGAGAAGGCCCGCAAGAAGAA
AGTCAAGGTGGAAGTGAAGAAGGTTGGATTCATCCCGCACAACCAGCGCA
ACAAGAAAATCAATGTGAAACGGGCGGACAAACATGTGGATGACTCCTGG
AAACAGGTGCCCAAAGATGACTGCTATGTGGGGCGCTACTACCGCTGGCC
AGTGTACTCGGTGCAGGAAGCTATCCAGTGCCATCGGGAGACGCATCATC
CCAGCATGTACAACGTACCCAATGCTCCCCTCAATTTGGATATTGAACTC
AACATGCAGGCGGAGAAGATCACACGTTTTGTGGATAACTTCCAGCGCAT
GGCCATGATTCCACACAAGTTTGACCACGGCGAGGAGCGGAAGATCATAG
TTTTCACCAAGGGAAATAATGAAGTCCTGGAGGCCAGGGAAGCTGGCGCC
TCGCTAGTCGGCGGCGTGGAGCTCATTAAGGATATTACCAGCGGCGAGCT
GCTGCTCTCCGACTACCAGTACGTCATTGCCCATCCGAATATACTGGCCG
AGCTGGTGGCCCTGCGAGGCCTGATGAAACGCAAGTTCCCAAATCCAAAG
AGCGAGACGCTGGGCACCAACCTGGCCGAGATGATCGTCAAATTCTCCAG
CGGCATTAGTTACAGTGCAGCCAAGGATGAGTACCAGCAAAACTTTGGCC
TGATCACCGCCAGTGTGGGCACTTTGGACATGGATGTCCAGAAGCTTGAG

BS08511.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:08:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG7494-PA 1065 mRpL1-RA 1..834 17..850 4170 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:02:39
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL1-RA 1220 CG7494-RA 73..906 17..850 4170 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:02:37
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8302124..8302456 518..850 1665 100 Plus
3R 32079331 3R 8301757..8302066 208..517 1550 100 Plus
3R 32079331 3R 8301512..8301702 17..207 955 100 Plus
Blast to na_te.dros performed on 2015-02-10 20:02:38 has no hits.

BS08511.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:42:40 Download gff for BS08511.5prime
Subject Subject Range Query Range Percent Splice Strand
mRpL1-PA 1..834 17..850 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:42:41 Download gff for BS08511.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7494-PA 1..834 17..850 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:27:26 Download gff for BS08511.5prime
Subject Subject Range Query Range Percent Splice Strand
mRpL1-RA 70..906 14..850 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:36:25 Download gff for BS08511.5prime
Subject Subject Range Query Range Percent Splice Strand
mRpL1-RA 70..906 14..850 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:36:25 Download gff for BS08511.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 8301509..8301702 14..207 99 -> Plus
3R 8301757..8302066 208..517 100 -> Plus
3R 8302124..8302456 518..850 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:27:26 Download gff for BS08511.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4127231..4127424 14..207 99 -> Plus
arm_3R 4127479..4127788 208..517 100 -> Plus
arm_3R 4127846..4128178 518..850 100   Plus

BS08511.complete Sequence

1097 bp (1097 high quality bases) assembled on 2006-01-18

GenBank Submission: FJ636189

> BS08511.complete
GAAGTTATCAGTCGACATGCAGTCCATTCTGTCTTCAATGAGGGCACTGG
CCCTGCGCCAGAGCACGGTGGAGCCCCTCCGCCTGCTGCATCTTTCCGCC
GTGAGCGAGGCGGCCCGTAAAGGAACTCGGGAGAAGGCCCGCAAGAAGAA
AGTCAAGGTGGAAGTGAAGAAGGTTGGATTCATCCCGCACAACCAGCGCA
ACAAGAAAATCAATGTGAAACGGGCGGACAAACATGTGGATGACTCCTGG
AAACAGGTGCCCAAAGATGACTGCTATGTGGGGCGCTACTACCGCTGGCC
AGTGTACTCGGTGCAGGAAGCTATCCAGTGCCATCGGGAGACGCATCATC
CCAGCATGTACAACGTACCCAATGCTCCCCTCAATTTGGATATTGAACTC
AACATGCAGGCGGAGAAGATCACACGTTTTGTGGATAACTTCCAGCGCAT
GGCCATGATTCCACACAAGTTTGACCACGGCGAGGAGCGGAAGATCATAG
TTTTCACCAAGGGAAATAATGAAGTCCTGGAGGCCAGGGAAGCTGGCGCC
TCGCTAGTCGGCGGCGTGGAGCTCATTAAGGATATTACCAGCGGCGAGCT
GCTGCTCTCCGACTACCAGTACGTCATTGCCCATCCGAATATACTGGCCG
AGCTGGTGGCCCTGCGAGGCCTGATGAAACGCAAGTTCCCAAATCCAAAG
AGCGAGACGCTGGGCACCAACCTGGCCGAGATGATCGTCAAATTCTCCAG
CGGCATTAGTTACAGTGCAGCCAAGGATGAGTACCAGCAAAACTTTGGCC
TGATCACCGCCAGTGTGGGCACTTTGGACATGGATGTCCAGAAGCTTGAG
GAGAACATCAAGTTCCTACTGCAGGATATTAACACTATGAGGCCCAAGCG
CGAGGGACGTTTCATTACACGTGTCCTGCTGAAGAGCCCGCCAAGCAGTG
AGCAGCTGAAAATCGATCCCTTTGTCTACGTTCCAGAGATGTGGGACAAG
AGCACGGCGAAGGTGAAAAGGGATGGGGCCAAGAAGCAGACAGAGCCGGC
GGAACCCCAAGAAGCAGTTGCCTCCAATTAGAAGCTTTCTAGACCAT

BS08511.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:06:37
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL1-RA 1065 CG7494-PA 1..1065 17..1081 5325 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:06:38
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL1-RA 1220 CG7494-RA 73..1137 17..1081 5325 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:06:35
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8302124..8302687 518..1081 2820 100 Plus
3R 32079331 3R 8301757..8302066 208..517 1550 100 Plus
3R 32079331 3R 8301512..8301702 17..207 955 100 Plus
Blast to na_te.dros performed on 2014-11-28 01:06:36 has no hits.

BS08511.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:03:03 Download gff for BS08511.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL1-RA 1..1065 17..1081 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:40:57 Download gff for BS08511.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL1-RA 68..1137 14..1087 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:39:11 Download gff for BS08511.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL1-RA 73..1137 17..1081 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:03:03 Download gff for BS08511.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL1-RA 68..1137 14..1087 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:44:41 Download gff for BS08511.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL1-RA 73..1137 17..1081 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:44:41 Download gff for BS08511.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8301512..8301702 17..207 100 -> Plus
3R 8301757..8302066 208..517 100 -> Plus
3R 8302124..8302687 518..1081 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:39:11 Download gff for BS08511.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4127234..4127424 17..207 100 -> Plus
arm_3R 4127479..4127788 208..517 100 -> Plus
arm_3R 4127846..4128409 518..1081 100   Plus

BS08511.pep Sequence

Translation from 16 to 1080

> BS08511.pep
MQSILSSMRALALRQSTVEPLRLLHLSAVSEAARKGTREKARKKKVKVEV
KKVGFIPHNQRNKKINVKRADKHVDDSWKQVPKDDCYVGRYYRWPVYSVQ
EAIQCHRETHHPSMYNVPNAPLNLDIELNMQAEKITRFVDNFQRMAMIPH
KFDHGEERKIIVFTKGNNEVLEAREAGASLVGGVELIKDITSGELLLSDY
QYVIAHPNILAELVALRGLMKRKFPNPKSETLGTNLAEMIVKFSSGISYS
AAKDEYQQNFGLITASVGTLDMDVQKLEENIKFLLQDINTMRPKREGRFI
TRVLLKSPPSSEQLKIDPFVYVPEMWDKSTAKVKRDGAKKQTEPAEPQEA
VASN*

BS08511.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:21:46
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL1-PA 354 CG7494-PA 1..354 1..354 1813 100 Plus