Clone Sequence Records
BS08511.3prime Sequence
911 bp (833 high quality bases) assembled on 2006-01-10
> BS08511.3prime
ATGGTCTAGAAAGCTTCTAATTGGAGGCAACTGCTTCTTGGGGTTCCGCC
GGCTCTGTCTGCTTCTTGGCCCCATCCCTTTTCACCTTCGCCGTGCTCTT
GTCCCACATCTCTGGAACGTAGACAAAGGGATCGATTTTCAGCTGCTCAC
TGCTTGGCGGGCTCTTCAGCAGGACACGTGTAATGAAACGTCCCTCGCGC
TTGGGCCTCATAGTGTTAATATCCTGCAGTAGGAACTTGATGTTCTCCTC
AAGCTTCTGGACATCCATGTCCAAAGTGCCCACACTGGCGGTGATCAGGC
CAAAGTTTTGCTGGTACTCATCCTTGGCTGCACTGTAACTAATGCCGCTG
GAGAATTTGACGATCATCTCGGCCAGGTTGGTGCCCAGCGTCTCGCTCTT
TGGATTTGGGAACTTGCGTTTCATCAGGCCTCGCAGGGCCACCAGCTCGG
CCAGTATATTCGGATGGGCAATGACGTACTGGTAGTCGGAGAGCAGCAGC
TCGCCGCTGGTAATATCCTTAATGAGCTCCACGCCGCCGACTAGCGAGGC
GCCAGCTTCCCTGGCCTCCAGGACTTCATTATTTCCCTTGGTGAAAACTA
TGATCTTCCGCTCCTCGCCGTGGTCAAACTTGTGTGGAATCATGGCCATG
CGCTGGAAGTTATCCACAAAACGTGTGATCTTCTCCGCCTGCATGTTGAG
TTCAATATCCAAATTGAGGGGAGCATTGGGTACGTTGTACATGCTGGGAT
GATGCGTCTCCCGATGGCACTGGATAGCTTCCTGCACCGAGTACACTGGC
CAGCGGTAGTAGCGCCCCACATAGCAGTCATCTTTGGGCACCTGTTTCCA
GGAGTCATCCACATGTTTGTCCGCCCGTTTCACATTGATTTTCTTGTTGC
GCTGGGTGTGC
BS08511.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:08:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7494-PA | 1065 | mRpL1-RA | 171..1065 | 911..17 | 4450 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:52:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL1-RA | 1220 | CG7494-RA | 243..1137 | 911..17 | 4460 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:52:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8302124..8302687 | 580..17 | 2820 | 100 | Minus |
3R | 32079331 | 3R | 8301757..8302066 | 890..581 | 1550 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 23:52:49 has no hits.
BS08511.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:42:39 Download gff for
BS08511.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL1-PA | 171..1065 | 17..911 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:42:40 Download gff for
BS08511.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7494-PA | 171..1065 | 17..911 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:38:16 Download gff for
BS08511.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL1-RA | 243..1139 | 11..911 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:48:32 Download gff for
BS08511.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL1-RA | 243..1139 | 11..911 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:48:32 Download gff for
BS08511.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8301757..8302066 | 581..890 | 100 | -> | Minus |
3R | 8301682..8301702 | 891..911 | 95 | -> | Minus |
3R | 8302124..8302689 | 11..580 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:38:16 Download gff for
BS08511.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4127404..4127424 | 891..911 | 95 | -> | Minus |
arm_3R | 4127479..4127788 | 581..890 | 100 | -> | Minus |
arm_3R | 4127846..4128411 | 11..580 | 99 | | Minus |
BS08511.5prime Sequence
850 bp (778 high quality bases) assembled on 2006-01-10
> BS08511.5prime
GAAGTTATCAGTCGACATGCAGTCCATTCTGTCTTCAATGAGGGCACTGG
CCCTGCGCCAGAGCACGGTGGAGCCCCTCCGCCTGCTGCATCTTTCCGCC
GTGAGCGAGGCGGCCCGTAAAGGAACTCGGGAGAAGGCCCGCAAGAAGAA
AGTCAAGGTGGAAGTGAAGAAGGTTGGATTCATCCCGCACAACCAGCGCA
ACAAGAAAATCAATGTGAAACGGGCGGACAAACATGTGGATGACTCCTGG
AAACAGGTGCCCAAAGATGACTGCTATGTGGGGCGCTACTACCGCTGGCC
AGTGTACTCGGTGCAGGAAGCTATCCAGTGCCATCGGGAGACGCATCATC
CCAGCATGTACAACGTACCCAATGCTCCCCTCAATTTGGATATTGAACTC
AACATGCAGGCGGAGAAGATCACACGTTTTGTGGATAACTTCCAGCGCAT
GGCCATGATTCCACACAAGTTTGACCACGGCGAGGAGCGGAAGATCATAG
TTTTCACCAAGGGAAATAATGAAGTCCTGGAGGCCAGGGAAGCTGGCGCC
TCGCTAGTCGGCGGCGTGGAGCTCATTAAGGATATTACCAGCGGCGAGCT
GCTGCTCTCCGACTACCAGTACGTCATTGCCCATCCGAATATACTGGCCG
AGCTGGTGGCCCTGCGAGGCCTGATGAAACGCAAGTTCCCAAATCCAAAG
AGCGAGACGCTGGGCACCAACCTGGCCGAGATGATCGTCAAATTCTCCAG
CGGCATTAGTTACAGTGCAGCCAAGGATGAGTACCAGCAAAACTTTGGCC
TGATCACCGCCAGTGTGGGCACTTTGGACATGGATGTCCAGAAGCTTGAG
BS08511.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:08:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7494-PA | 1065 | mRpL1-RA | 1..834 | 17..850 | 4170 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:02:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL1-RA | 1220 | CG7494-RA | 73..906 | 17..850 | 4170 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:02:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8302124..8302456 | 518..850 | 1665 | 100 | Plus |
3R | 32079331 | 3R | 8301757..8302066 | 208..517 | 1550 | 100 | Plus |
3R | 32079331 | 3R | 8301512..8301702 | 17..207 | 955 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 20:02:38 has no hits.
BS08511.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:42:40 Download gff for
BS08511.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL1-PA | 1..834 | 17..850 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:42:41 Download gff for
BS08511.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7494-PA | 1..834 | 17..850 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:27:26 Download gff for
BS08511.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL1-RA | 70..906 | 14..850 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:36:25 Download gff for
BS08511.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL1-RA | 70..906 | 14..850 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:36:25 Download gff for
BS08511.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8301509..8301702 | 14..207 | 99 | -> | Plus |
3R | 8301757..8302066 | 208..517 | 100 | -> | Plus |
3R | 8302124..8302456 | 518..850 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:27:26 Download gff for
BS08511.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4127231..4127424 | 14..207 | 99 | -> | Plus |
arm_3R | 4127479..4127788 | 208..517 | 100 | -> | Plus |
arm_3R | 4127846..4128178 | 518..850 | 100 | | Plus |
BS08511.complete Sequence
1097 bp (1097 high quality bases) assembled on 2006-01-18
GenBank Submission: FJ636189
> BS08511.complete
GAAGTTATCAGTCGACATGCAGTCCATTCTGTCTTCAATGAGGGCACTGG
CCCTGCGCCAGAGCACGGTGGAGCCCCTCCGCCTGCTGCATCTTTCCGCC
GTGAGCGAGGCGGCCCGTAAAGGAACTCGGGAGAAGGCCCGCAAGAAGAA
AGTCAAGGTGGAAGTGAAGAAGGTTGGATTCATCCCGCACAACCAGCGCA
ACAAGAAAATCAATGTGAAACGGGCGGACAAACATGTGGATGACTCCTGG
AAACAGGTGCCCAAAGATGACTGCTATGTGGGGCGCTACTACCGCTGGCC
AGTGTACTCGGTGCAGGAAGCTATCCAGTGCCATCGGGAGACGCATCATC
CCAGCATGTACAACGTACCCAATGCTCCCCTCAATTTGGATATTGAACTC
AACATGCAGGCGGAGAAGATCACACGTTTTGTGGATAACTTCCAGCGCAT
GGCCATGATTCCACACAAGTTTGACCACGGCGAGGAGCGGAAGATCATAG
TTTTCACCAAGGGAAATAATGAAGTCCTGGAGGCCAGGGAAGCTGGCGCC
TCGCTAGTCGGCGGCGTGGAGCTCATTAAGGATATTACCAGCGGCGAGCT
GCTGCTCTCCGACTACCAGTACGTCATTGCCCATCCGAATATACTGGCCG
AGCTGGTGGCCCTGCGAGGCCTGATGAAACGCAAGTTCCCAAATCCAAAG
AGCGAGACGCTGGGCACCAACCTGGCCGAGATGATCGTCAAATTCTCCAG
CGGCATTAGTTACAGTGCAGCCAAGGATGAGTACCAGCAAAACTTTGGCC
TGATCACCGCCAGTGTGGGCACTTTGGACATGGATGTCCAGAAGCTTGAG
GAGAACATCAAGTTCCTACTGCAGGATATTAACACTATGAGGCCCAAGCG
CGAGGGACGTTTCATTACACGTGTCCTGCTGAAGAGCCCGCCAAGCAGTG
AGCAGCTGAAAATCGATCCCTTTGTCTACGTTCCAGAGATGTGGGACAAG
AGCACGGCGAAGGTGAAAAGGGATGGGGCCAAGAAGCAGACAGAGCCGGC
GGAACCCCAAGAAGCAGTTGCCTCCAATTAGAAGCTTTCTAGACCAT
BS08511.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:06:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL1-RA | 1065 | CG7494-PA | 1..1065 | 17..1081 | 5325 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:06:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL1-RA | 1220 | CG7494-RA | 73..1137 | 17..1081 | 5325 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:06:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8302124..8302687 | 518..1081 | 2820 | 100 | Plus |
3R | 32079331 | 3R | 8301757..8302066 | 208..517 | 1550 | 100 | Plus |
3R | 32079331 | 3R | 8301512..8301702 | 17..207 | 955 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:06:36 has no hits.
BS08511.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:03:03 Download gff for
BS08511.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL1-RA | 1..1065 | 17..1081 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:40:57 Download gff for
BS08511.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL1-RA | 68..1137 | 14..1087 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:39:11 Download gff for
BS08511.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL1-RA | 73..1137 | 17..1081 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:03:03 Download gff for
BS08511.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL1-RA | 68..1137 | 14..1087 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:44:41 Download gff for
BS08511.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL1-RA | 73..1137 | 17..1081 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:44:41 Download gff for
BS08511.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8301512..8301702 | 17..207 | 100 | -> | Plus |
3R | 8301757..8302066 | 208..517 | 100 | -> | Plus |
3R | 8302124..8302687 | 518..1081 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:39:11 Download gff for
BS08511.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4127234..4127424 | 17..207 | 100 | -> | Plus |
arm_3R | 4127479..4127788 | 208..517 | 100 | -> | Plus |
arm_3R | 4127846..4128409 | 518..1081 | 100 | | Plus |
BS08511.pep Sequence
Translation from 16 to 1080
> BS08511.pep
MQSILSSMRALALRQSTVEPLRLLHLSAVSEAARKGTREKARKKKVKVEV
KKVGFIPHNQRNKKINVKRADKHVDDSWKQVPKDDCYVGRYYRWPVYSVQ
EAIQCHRETHHPSMYNVPNAPLNLDIELNMQAEKITRFVDNFQRMAMIPH
KFDHGEERKIIVFTKGNNEVLEAREAGASLVGGVELIKDITSGELLLSDY
QYVIAHPNILAELVALRGLMKRKFPNPKSETLGTNLAEMIVKFSSGISYS
AAKDEYQQNFGLITASVGTLDMDVQKLEENIKFLLQDINTMRPKREGRFI
TRVLLKSPPSSEQLKIDPFVYVPEMWDKSTAKVKRDGAKKQTEPAEPQEA
VASN*
BS08511.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:21:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL1-PA | 354 | CG7494-PA | 1..354 | 1..354 | 1813 | 100 | Plus |