Clone BS08516 Report

Search the DGRC for BS08516

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:85
Well:16
Vector:pDNR-Dual
Associated Gene/Transcriptbru-3-RA
Protein status:BS08516.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08516.3prime Sequence

814 bp (754 high quality bases) assembled on 2006-01-10

> BS08516.3prime
ATGGTCTAGAAAGCTTTTAATAGGGTCGACTGGCATCCTTTGGCCGCTTC
AATTGAACTTTCAGTCTTTTCATGCCAATCTGGAAGCCATTCATGGCCTG
AATGGCCGCTTGAGCGCTGGCGGGATTATCGAATGAAACAAATCCGAAAC
ATTTGCTCTGGTTTGTAGCACGATCGATGAAGACCTTGGAGCTGATCACA
TTGCCAAAGGGCAGGAACATTTGCATTAACTCGGCGTCGCCAAACTCCTG
GGGCAAATGGTAGATGAAGAGATTGCATCCCTCGGGTCCGGATATCGAAC
ATCCTGGGAACATCAGAAAATCTTCACGCTGAGTGGGTGCAACCGCCGCT
AGGGGAGGTGGTAAAGCTTGTGGAAACTGTCCATAGACGGCGGGAAAGGC
AACTCCTGGAAACGGTGGCAGACCAGGGAAGGCATGTTGCAGGGTAGCAG
CATCGCCGTTTGGCAAACCTTGTGGCGGTATAGTCAAGTGCAGCGGATGT
CCTGGGAATGCCGTTTGTGGAATGCCGTTCGTGAAGACGCCGTCCGCGGC
AGCCGCCGCAGCAGCAGCGGCGGCCGCTCCGCCGGGCTGTCCGTTGGGCG
TGTTGGCGCCCATGTTGAAGTTGGGCATGGTCGGCGACGGCAGCGAGGGG
GGCTGGCCGGTGCCGTTTAGGCCATGAGGTATCTGCGTTGCCAGAGCCGC
CATCGGGTTCATGTAGGCGGCTGCGGATCCGGGTGCCGTGGCAGCGGCGG
CCATCAGAGCGGCCTGTTGCTGTTGCTGGGCGTAGGCGCCGTACGGACTG
AACTGATTAAAGAC

BS08516.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:08:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG12478-PA 1269 bru-3-RA 472..1269 814..17 3990 100 Minus
CG12478-PB 1092 bru-3-RB 295..1092 814..17 3990 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:52:29
Subject Length Description Subject Range Query Range Score Percent Strand
bru-3-RO 2665 CG43744-RO 1310..2107 814..17 3990 100 Minus
bru-3-RN 2929 CG43744-RN 1574..2371 814..17 3990 100 Minus
bru-3-RE 5007 CG43744-RE 1190..1987 814..17 3990 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:52:22
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 13541722..13542001 499..778 1400 100 Plus
3L 28110227 3L 13538942..13539122 144..324 905 100 Plus
3L 28110227 3L 13538744..13538872 17..145 645 100 Plus
3L 28110227 3L 13541489..13541587 400..498 495 100 Plus
3L 28110227 3L 13540564..13540642 322..400 395 100 Plus
3L 28110227 3L 13542075..13542113 776..814 195 100 Plus
Blast to na_te.dros performed on 2015-02-11 23:52:25 has no hits.

BS08516.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:42:47 Download gff for BS08516.3prime
Subject Subject Range Query Range Percent Splice Strand
bru-3-PA 472..1269 17..814 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:42:52 Download gff for BS08516.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12478-PB 295..1092 17..814 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:38:13 Download gff for BS08516.3prime
Subject Subject Range Query Range Percent Splice Strand
bru-3-RE 1190..1987 17..814 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:47:36 Download gff for BS08516.3prime
Subject Subject Range Query Range Percent Splice Strand
bru-3-RE 1190..1987 17..814 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:47:36 Download gff for BS08516.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 13542075..13542113 776..814 100   Plus
3L 13538744..13538871 17..144 100 <- Plus
3L 13538943..13539119 145..321 100 <- Plus
3L 13540564..13540641 322..399 100 <- Plus
3L 13541489..13541587 400..498 100 <- Plus
3L 13541722..13541998 499..775 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:38:13 Download gff for BS08516.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 13534822..13535098 499..775 100 <- Plus
arm_3L 13535175..13535213 776..814 100   Plus
arm_3L 13531844..13531971 17..144 100 <- Plus
arm_3L 13532043..13532219 145..321 100 <- Plus
arm_3L 13533664..13533741 322..399 100 <- Plus
arm_3L 13534589..13534687 400..498 100 <- Plus

BS08516.5prime Sequence

872 bp (798 high quality bases) assembled on 2006-01-10

> BS08516.5prime
GAAGTTATCAGTCGACATGGTTCATATTATTGAATTGGTCGGCCAGCCGA
AGGTTGAGTTTGCTCAACAAGTTACTGTAAGTTGCCATCATCCATTAATA
CCACCAGCCATCAAATTAATGAACCGTGCTTTACAGCTGAAGCCAGCTGA
AAATGAAAGTCGCAGCGAGCATTTAGATCGCAAGCTGTTCGTTGGCATGC
TCAGCAAACAACAGACCGAAGACGATGTTAGACAAATCTTCCATCCCTTC
GGCACTATAGAGGAGTGCACCATACTTCGTGGGCCGGACGGTGCTAGCAA
AGGCTGCGCTTTCGTCAAATTTGGTTCGCAGCAGGAGGCCCAGTCAGCAA
TAACCAACCTACACGGAAGTCAAACTATGCCGGGCGCATCCTCCAGCCTG
GTCGTCAAATACGCCGACACGGAGAAGGAGCGACAAATAAGGCGCATGCA
GCAAATGGCCGGTCACATGAACCTGCTGAATCCGTTCGTCTTTAATCAGT
TCAGTCCGTACGGCGCCTACGCCCAGCAACAGCAACAGGCCGCTCTGATG
GCCGCCGCTGCCACGGCACCCGGATCCGCAGCCGCCTACATGAACCCGAT
GGCGGCTCTGGCAACGCAGATACCTCATGGCCTAAACGGCACCGGCCAGC
CCCCCTCGCTGCCGTCGCCGACCATGCCCAACTTCAACATGGGCGCCAAC
ACGCCCAACGGACAGCCCGGCGGAGCGGCCGCCGCTGCTGCTGCGGCGGC
TGCCGCGGACGGCGTCTTCACGAACGGCATTCCACAAACGGCATTCCCAG
GACATCCGCTGCACTTGACTATACCGCCACAAGGTTTGCCAAACGGCGAA
TGCTGCTACCCCTGCAACATGC

BS08516.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:08:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG12478-PA 1269 bru-3-RA 1..833 17..849 4165 100 Plus
CG12478-PB 1092 bru-3-RB 109..656 302..849 2740 100 Plus
CG12478-PB 1092 bru-3-RB 1..60 17..76 300 100 Plus
CG12478-PB 1092 bru-3-RB 61..109 119..167 245 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:52:16
Subject Length Description Subject Range Query Range Score Percent Strand
bru-3-RC 2509 CG43744-RC 761..1614 17..872 4230 99.8 Plus
bru-3-RA 2587 CG43744-RA 761..1614 17..872 4230 99.8 Plus
bru-3-RO 2665 CG43744-RO 935..1692 113..872 3735 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:52:10
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 13541722..13542001 803..524 1400 100 Minus
3L 28110227 3L 13542075..13542219 526..382 725 100 Minus
3L 28110227 3L 13602341..13602477 303..167 685 100 Minus
3L 28110227 3L 13584191..13584273 383..301 415 100 Minus
3L 28110227 3L 13664413..13664478 82..17 315 98.5 Minus
3L 28110227 3L 13541521..13541587 872..804 245 97.1 Minus
3L 28110227 3L 13638517..13638565 167..119 245 100 Minus
3L 28110227 3L 13651555..13651596 118..77 210 100 Minus
Blast to na_te.dros performed on 2015-02-12 11:52:13 has no hits.

BS08516.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:42:49 Download gff for BS08516.5prime
Subject Subject Range Query Range Percent Splice Strand
bru-3-PA 1..854 17..872 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:42:53 Download gff for BS08516.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12478-PA 1..854 17..872 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:29:03 Download gff for BS08516.5prime
Subject Subject Range Query Range Percent Splice Strand
bru-3-RA 751..1614 7..872 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:58:11 Download gff for BS08516.5prime
Subject Subject Range Query Range Percent Splice Strand
bru-3-RA 751..1614 7..872 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:58:11 Download gff for BS08516.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 13541521..13541587 804..872 97 <- Minus
3L 13541722..13541998 527..803 100 <- Minus
3L 13542075..13542218 383..526 100 <- Minus
3L 13584192..13584271 303..382 100 <- Minus
3L 13602342..13602476 168..302 100 <- Minus
3L 13638517..13638565 119..167 100 <- Minus
3L 13651555..13651596 77..118 100 <- Minus
3L 13664419..13664488 7..76 94   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:29:03 Download gff for BS08516.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 13534621..13534687 804..872 97 <- Minus
arm_3L 13534822..13535098 527..803 100 <- Minus
arm_3L 13535175..13535318 383..526 100 <- Minus
arm_3L 13577292..13577371 303..382 100 <- Minus
arm_3L 13595442..13595576 168..302 100 <- Minus
arm_3L 13631617..13631665 119..167 100 <- Minus
arm_3L 13644655..13644696 77..118 100 <- Minus
arm_3L 13657519..13657588 7..76 94   Minus

BS08516.complete Sequence

1301 bp (1301 high quality bases) assembled on 2006-01-18

GenBank Submission: FJ636190

> BS08516.complete
GAAGTTATCAGTCGACATGGTTCATATTATTGAATTGGTCGGCCAGCCGA
AGGTTGAGTTTGCTCAACAAGTTACTGTAAGTTGCCATCATCCATTAATA
CCACCAGCCATCAAATTAATGAACCGTGCTTTACAGCTGAAGCCAGCTGA
AAATGAAAGTCGCAGCGAGCATTTAGATCGCAAGCTGTTCGTTGGCATGC
TCAGCAAACAACAGACCGAAGACGATGTTAGACAAATCTTCCATCCCTTC
GGCACTATAGAGGAGTGCACCATACTTCGTGGGCCGGACGGTGCTAGCAA
AGGCTGCGCTTTCGTCAAATTTGGTTCGCAGCAGGAGGCCCAGTCAGCAA
TAACCAACCTACACGGAAGTCAAACTATGCCGGGCGCATCCTCCAGCCTG
GTCGTCAAATACGCCGACACGGAGAAGGAGCGACAAATAAGGCGCATGCA
GCAAATGGCCGGTCACATGAACCTGCTGAATCCGTTCGTCTTTAATCAGT
TCAGTCCGTACGGCGCCTACGCCCAGCAACAGCAACAGGCCGCTCTGATG
GCCGCCGCTGCCACGGCACCCGGATCCGCAGCCGCCTACATGAACCCGAT
GGCGGCTCTGGCAACGCAGATACCTCATGGCCTAAACGGCACCGGCCAGC
CCCCCTCGCTGCCGTCGCCGACCATGCCCAACTTCAACATGGGCGCCAAC
ACGCCCAACGGACAGCCCGGCGGAGCGGCCGCCGCTGCTGCTGCGGCGGC
TGCCGCGGACGGCGTCTTCACGAACGGCATTCCACAAACGGCATTCCCAG
GACATCCGCTGCACTTGACTATACCGCCACAAGGTTTGCCAAACGGCGAT
GCTGCTACCCTGCAACATGCCTTCCCTGGTCTGCCACCGTTTCCAGGAGT
TGCCTTTCCCGCCGTCTATGGACAGTTTCCACAAGCTTTACCACCTCCCC
TAGCGGCGGTTGCACCCACTCAGCGTGAAGATTTTCTGATGTTCCCAGGA
TGTTCGATATCCGGACCCGAGGGATGCAATCTCTTCATCTACCATTTGCC
CCAGGAGTTTGGCGACGCCGAGTTAATGCAAATGTTCCTGCCCTTTGGCA
ATGTGATCAGCTCCAAGGTCTTCATCGATCGTGCTACAAACCAGAGCAAA
TGTTTCGGATTTGTTTCATTCGATAATCCCGCCAGCGCTCAAGCGGCCAT
TCAGGCCATGAATGGCTTCCAGATTGGCATGAAAAGACTGAAAGTTCAAT
TGAAGCGGCCAAAGGATGCCAGTCGACCCTATTAAAAGCTTTCTAGACCA
T

BS08516.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:31:56
Subject Length Description Subject Range Query Range Score Percent Strand
bru-3-RA 1269 CG43744-PA 1..1269 17..1285 6345 100 Plus
bru-3-RO 1212 CG43744-PO 40..1212 113..1285 5850 99.9 Plus
bru-3-RN 1212 CG43744-PN 40..1212 113..1285 5850 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:31:57
Subject Length Description Subject Range Query Range Score Percent Strand
bru-3-RA 2587 CG43744-RA 761..2029 17..1285 6345 100 Plus
bru-3-RO 2665 CG43744-RO 935..2107 113..1285 5850 99.9 Plus
bru-3-RN 2929 CG43744-RN 1199..2371 113..1285 5850 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:31:54
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 13541722..13542001 803..524 1400 100 Minus
3L 28110227 3L 13538942..13539122 1158..978 905 100 Minus
3L 28110227 3L 13542075..13542219 526..382 725 100 Minus
3L 28110227 3L 13602341..13602477 303..167 685 100 Minus
3L 28110227 3L 13538744..13538872 1285..1157 645 100 Minus
3L 28110227 3L 13541489..13541587 902..804 495 100 Minus
3L 28110227 3L 13584191..13584273 383..301 415 100 Minus
3L 28110227 3L 13540564..13540642 980..902 395 100 Minus
3L 28110227 3L 13664413..13664478 82..17 315 98.5 Minus
3L 28110227 3L 13638517..13638565 167..119 245 100 Minus
3L 28110227 3L 13651555..13651596 118..77 210 100 Minus
Blast to na_te.dros performed on 2014-11-28 05:31:55 has no hits.

BS08516.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:02:48 Download gff for BS08516.complete
Subject Subject Range Query Range Percent Splice Strand
bru-3-RA 1..1269 17..1285 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:42:55 Download gff for BS08516.complete
Subject Subject Range Query Range Percent Splice Strand
bru-3-RA 761..2027 17..1283 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:15:11 Download gff for BS08516.complete
Subject Subject Range Query Range Percent Splice Strand
bru-3-RA 761..2027 17..1283 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:02:49 Download gff for BS08516.complete
Subject Subject Range Query Range Percent Splice Strand
bru-3-RA 751..2029 7..1285 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:13:07 Download gff for BS08516.complete
Subject Subject Range Query Range Percent Splice Strand
bru-3-RA 761..2027 17..1283 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:13:07 Download gff for BS08516.complete
Subject Subject Range Query Range Percent Splice Strand
3L 13602342..13602476 168..302 100 <- Minus
3L 13638517..13638565 119..167 100 <- Minus
3L 13651555..13651596 77..118 100 <- Minus
3L 13664419..13664478 17..76 100   Minus
3L 13538746..13538871 1158..1283 100 <- Minus
3L 13538943..13539119 981..1157 100 <- Minus
3L 13540564..13540641 903..980 100 <- Minus
3L 13541489..13541587 804..902 100 <- Minus
3L 13541722..13541998 527..803 100 <- Minus
3L 13542075..13542218 383..526 100 <- Minus
3L 13584192..13584271 303..382 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:15:11 Download gff for BS08516.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 13595442..13595576 168..302 100 <- Minus
arm_3L 13631617..13631665 119..167 100 <- Minus
arm_3L 13644655..13644696 77..118 100 <- Minus
arm_3L 13657519..13657578 17..76 100   Minus
arm_3L 13531846..13531971 1158..1283 100 <- Minus
arm_3L 13532043..13532219 981..1157 100 <- Minus
arm_3L 13533664..13533741 903..980 100 <- Minus
arm_3L 13534589..13534687 804..902 100 <- Minus
arm_3L 13534822..13535098 527..803 100 <- Minus
arm_3L 13535175..13535318 383..526 100 <- Minus
arm_3L 13577292..13577371 303..382 100 <- Minus

BS08516.pep Sequence

Translation from 16 to 1284

> BS08516.pep
MVHIIELVGQPKVEFAQQVTVSCHHPLIPPAIKLMNRALQLKPAENESRS
EHLDRKLFVGMLSKQQTEDDVRQIFHPFGTIEECTILRGPDGASKGCAFV
KFGSQQEAQSAITNLHGSQTMPGASSSLVVKYADTEKERQIRRMQQMAGH
MNLLNPFVFNQFSPYGAYAQQQQQAALMAAAATAPGSAAAYMNPMAALAT
QIPHGLNGTGQPPSLPSPTMPNFNMGANTPNGQPGGAAAAAAAAAAADGV
FTNGIPQTAFPGHPLHLTIPPQGLPNGDAATLQHAFPGLPPFPGVAFPAV
YGQFPQALPPPLAAVAPTQREDFLMFPGCSISGPEGCNLFIYHLPQEFGD
AELMQMFLPFGNVISSKVFIDRATNQSKCFGFVSFDNPASAQAAIQAMNG
FQIGMKRLKVQLKRPKDASRPY*

BS08516.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:22:28
Subject Length Description Subject Range Query Range Score Percent Strand
bru-3-PA 422 CG43744-PA 1..422 1..422 2216 100 Plus
bru-3-PE 408 CG43744-PE 1..408 1..422 2112 96.7 Plus
bru-3-PH 416 CG43744-PH 1..416 1..422 2093 94.9 Plus
bru-3-PO 403 CG43744-PO 14..403 33..422 2047 100 Plus
bru-3-PN 403 CG43744-PN 14..403 33..422 2047 100 Plus