Clone Sequence Records
BS08516.3prime Sequence
814 bp (754 high quality bases) assembled on 2006-01-10
> BS08516.3prime
ATGGTCTAGAAAGCTTTTAATAGGGTCGACTGGCATCCTTTGGCCGCTTC
AATTGAACTTTCAGTCTTTTCATGCCAATCTGGAAGCCATTCATGGCCTG
AATGGCCGCTTGAGCGCTGGCGGGATTATCGAATGAAACAAATCCGAAAC
ATTTGCTCTGGTTTGTAGCACGATCGATGAAGACCTTGGAGCTGATCACA
TTGCCAAAGGGCAGGAACATTTGCATTAACTCGGCGTCGCCAAACTCCTG
GGGCAAATGGTAGATGAAGAGATTGCATCCCTCGGGTCCGGATATCGAAC
ATCCTGGGAACATCAGAAAATCTTCACGCTGAGTGGGTGCAACCGCCGCT
AGGGGAGGTGGTAAAGCTTGTGGAAACTGTCCATAGACGGCGGGAAAGGC
AACTCCTGGAAACGGTGGCAGACCAGGGAAGGCATGTTGCAGGGTAGCAG
CATCGCCGTTTGGCAAACCTTGTGGCGGTATAGTCAAGTGCAGCGGATGT
CCTGGGAATGCCGTTTGTGGAATGCCGTTCGTGAAGACGCCGTCCGCGGC
AGCCGCCGCAGCAGCAGCGGCGGCCGCTCCGCCGGGCTGTCCGTTGGGCG
TGTTGGCGCCCATGTTGAAGTTGGGCATGGTCGGCGACGGCAGCGAGGGG
GGCTGGCCGGTGCCGTTTAGGCCATGAGGTATCTGCGTTGCCAGAGCCGC
CATCGGGTTCATGTAGGCGGCTGCGGATCCGGGTGCCGTGGCAGCGGCGG
CCATCAGAGCGGCCTGTTGCTGTTGCTGGGCGTAGGCGCCGTACGGACTG
AACTGATTAAAGAC
BS08516.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:08:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12478-PA | 1269 | bru-3-RA | 472..1269 | 814..17 | 3990 | 100 | Minus |
CG12478-PB | 1092 | bru-3-RB | 295..1092 | 814..17 | 3990 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:52:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bru-3-RO | 2665 | CG43744-RO | 1310..2107 | 814..17 | 3990 | 100 | Minus |
bru-3-RN | 2929 | CG43744-RN | 1574..2371 | 814..17 | 3990 | 100 | Minus |
bru-3-RE | 5007 | CG43744-RE | 1190..1987 | 814..17 | 3990 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:52:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 13541722..13542001 | 499..778 | 1400 | 100 | Plus |
3L | 28110227 | 3L | 13538942..13539122 | 144..324 | 905 | 100 | Plus |
3L | 28110227 | 3L | 13538744..13538872 | 17..145 | 645 | 100 | Plus |
3L | 28110227 | 3L | 13541489..13541587 | 400..498 | 495 | 100 | Plus |
3L | 28110227 | 3L | 13540564..13540642 | 322..400 | 395 | 100 | Plus |
3L | 28110227 | 3L | 13542075..13542113 | 776..814 | 195 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 23:52:25 has no hits.
BS08516.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:42:47 Download gff for
BS08516.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bru-3-PA | 472..1269 | 17..814 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:42:52 Download gff for
BS08516.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12478-PB | 295..1092 | 17..814 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:38:13 Download gff for
BS08516.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bru-3-RE | 1190..1987 | 17..814 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:47:36 Download gff for
BS08516.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bru-3-RE | 1190..1987 | 17..814 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:47:36 Download gff for
BS08516.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 13542075..13542113 | 776..814 | 100 | | Plus |
3L | 13538744..13538871 | 17..144 | 100 | <- | Plus |
3L | 13538943..13539119 | 145..321 | 100 | <- | Plus |
3L | 13540564..13540641 | 322..399 | 100 | <- | Plus |
3L | 13541489..13541587 | 400..498 | 100 | <- | Plus |
3L | 13541722..13541998 | 499..775 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:38:13 Download gff for
BS08516.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 13534822..13535098 | 499..775 | 100 | <- | Plus |
arm_3L | 13535175..13535213 | 776..814 | 100 | | Plus |
arm_3L | 13531844..13531971 | 17..144 | 100 | <- | Plus |
arm_3L | 13532043..13532219 | 145..321 | 100 | <- | Plus |
arm_3L | 13533664..13533741 | 322..399 | 100 | <- | Plus |
arm_3L | 13534589..13534687 | 400..498 | 100 | <- | Plus |
BS08516.5prime Sequence
872 bp (798 high quality bases) assembled on 2006-01-10
> BS08516.5prime
GAAGTTATCAGTCGACATGGTTCATATTATTGAATTGGTCGGCCAGCCGA
AGGTTGAGTTTGCTCAACAAGTTACTGTAAGTTGCCATCATCCATTAATA
CCACCAGCCATCAAATTAATGAACCGTGCTTTACAGCTGAAGCCAGCTGA
AAATGAAAGTCGCAGCGAGCATTTAGATCGCAAGCTGTTCGTTGGCATGC
TCAGCAAACAACAGACCGAAGACGATGTTAGACAAATCTTCCATCCCTTC
GGCACTATAGAGGAGTGCACCATACTTCGTGGGCCGGACGGTGCTAGCAA
AGGCTGCGCTTTCGTCAAATTTGGTTCGCAGCAGGAGGCCCAGTCAGCAA
TAACCAACCTACACGGAAGTCAAACTATGCCGGGCGCATCCTCCAGCCTG
GTCGTCAAATACGCCGACACGGAGAAGGAGCGACAAATAAGGCGCATGCA
GCAAATGGCCGGTCACATGAACCTGCTGAATCCGTTCGTCTTTAATCAGT
TCAGTCCGTACGGCGCCTACGCCCAGCAACAGCAACAGGCCGCTCTGATG
GCCGCCGCTGCCACGGCACCCGGATCCGCAGCCGCCTACATGAACCCGAT
GGCGGCTCTGGCAACGCAGATACCTCATGGCCTAAACGGCACCGGCCAGC
CCCCCTCGCTGCCGTCGCCGACCATGCCCAACTTCAACATGGGCGCCAAC
ACGCCCAACGGACAGCCCGGCGGAGCGGCCGCCGCTGCTGCTGCGGCGGC
TGCCGCGGACGGCGTCTTCACGAACGGCATTCCACAAACGGCATTCCCAG
GACATCCGCTGCACTTGACTATACCGCCACAAGGTTTGCCAAACGGCGAA
TGCTGCTACCCCTGCAACATGC
BS08516.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:08:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12478-PA | 1269 | bru-3-RA | 1..833 | 17..849 | 4165 | 100 | Plus |
CG12478-PB | 1092 | bru-3-RB | 109..656 | 302..849 | 2740 | 100 | Plus |
CG12478-PB | 1092 | bru-3-RB | 1..60 | 17..76 | 300 | 100 | Plus |
CG12478-PB | 1092 | bru-3-RB | 61..109 | 119..167 | 245 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:52:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bru-3-RC | 2509 | CG43744-RC | 761..1614 | 17..872 | 4230 | 99.8 | Plus |
bru-3-RA | 2587 | CG43744-RA | 761..1614 | 17..872 | 4230 | 99.8 | Plus |
bru-3-RO | 2665 | CG43744-RO | 935..1692 | 113..872 | 3735 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:52:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 13541722..13542001 | 803..524 | 1400 | 100 | Minus |
3L | 28110227 | 3L | 13542075..13542219 | 526..382 | 725 | 100 | Minus |
3L | 28110227 | 3L | 13602341..13602477 | 303..167 | 685 | 100 | Minus |
3L | 28110227 | 3L | 13584191..13584273 | 383..301 | 415 | 100 | Minus |
3L | 28110227 | 3L | 13664413..13664478 | 82..17 | 315 | 98.5 | Minus |
3L | 28110227 | 3L | 13541521..13541587 | 872..804 | 245 | 97.1 | Minus |
3L | 28110227 | 3L | 13638517..13638565 | 167..119 | 245 | 100 | Minus |
3L | 28110227 | 3L | 13651555..13651596 | 118..77 | 210 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:52:13 has no hits.
BS08516.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:42:49 Download gff for
BS08516.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bru-3-PA | 1..854 | 17..872 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:42:53 Download gff for
BS08516.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12478-PA | 1..854 | 17..872 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:29:03 Download gff for
BS08516.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bru-3-RA | 751..1614 | 7..872 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:58:11 Download gff for
BS08516.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bru-3-RA | 751..1614 | 7..872 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:58:11 Download gff for
BS08516.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 13541521..13541587 | 804..872 | 97 | <- | Minus |
3L | 13541722..13541998 | 527..803 | 100 | <- | Minus |
3L | 13542075..13542218 | 383..526 | 100 | <- | Minus |
3L | 13584192..13584271 | 303..382 | 100 | <- | Minus |
3L | 13602342..13602476 | 168..302 | 100 | <- | Minus |
3L | 13638517..13638565 | 119..167 | 100 | <- | Minus |
3L | 13651555..13651596 | 77..118 | 100 | <- | Minus |
3L | 13664419..13664488 | 7..76 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:29:03 Download gff for
BS08516.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 13534621..13534687 | 804..872 | 97 | <- | Minus |
arm_3L | 13534822..13535098 | 527..803 | 100 | <- | Minus |
arm_3L | 13535175..13535318 | 383..526 | 100 | <- | Minus |
arm_3L | 13577292..13577371 | 303..382 | 100 | <- | Minus |
arm_3L | 13595442..13595576 | 168..302 | 100 | <- | Minus |
arm_3L | 13631617..13631665 | 119..167 | 100 | <- | Minus |
arm_3L | 13644655..13644696 | 77..118 | 100 | <- | Minus |
arm_3L | 13657519..13657588 | 7..76 | 94 | | Minus |
BS08516.complete Sequence
1301 bp (1301 high quality bases) assembled on 2006-01-18
GenBank Submission: FJ636190
> BS08516.complete
GAAGTTATCAGTCGACATGGTTCATATTATTGAATTGGTCGGCCAGCCGA
AGGTTGAGTTTGCTCAACAAGTTACTGTAAGTTGCCATCATCCATTAATA
CCACCAGCCATCAAATTAATGAACCGTGCTTTACAGCTGAAGCCAGCTGA
AAATGAAAGTCGCAGCGAGCATTTAGATCGCAAGCTGTTCGTTGGCATGC
TCAGCAAACAACAGACCGAAGACGATGTTAGACAAATCTTCCATCCCTTC
GGCACTATAGAGGAGTGCACCATACTTCGTGGGCCGGACGGTGCTAGCAA
AGGCTGCGCTTTCGTCAAATTTGGTTCGCAGCAGGAGGCCCAGTCAGCAA
TAACCAACCTACACGGAAGTCAAACTATGCCGGGCGCATCCTCCAGCCTG
GTCGTCAAATACGCCGACACGGAGAAGGAGCGACAAATAAGGCGCATGCA
GCAAATGGCCGGTCACATGAACCTGCTGAATCCGTTCGTCTTTAATCAGT
TCAGTCCGTACGGCGCCTACGCCCAGCAACAGCAACAGGCCGCTCTGATG
GCCGCCGCTGCCACGGCACCCGGATCCGCAGCCGCCTACATGAACCCGAT
GGCGGCTCTGGCAACGCAGATACCTCATGGCCTAAACGGCACCGGCCAGC
CCCCCTCGCTGCCGTCGCCGACCATGCCCAACTTCAACATGGGCGCCAAC
ACGCCCAACGGACAGCCCGGCGGAGCGGCCGCCGCTGCTGCTGCGGCGGC
TGCCGCGGACGGCGTCTTCACGAACGGCATTCCACAAACGGCATTCCCAG
GACATCCGCTGCACTTGACTATACCGCCACAAGGTTTGCCAAACGGCGAT
GCTGCTACCCTGCAACATGCCTTCCCTGGTCTGCCACCGTTTCCAGGAGT
TGCCTTTCCCGCCGTCTATGGACAGTTTCCACAAGCTTTACCACCTCCCC
TAGCGGCGGTTGCACCCACTCAGCGTGAAGATTTTCTGATGTTCCCAGGA
TGTTCGATATCCGGACCCGAGGGATGCAATCTCTTCATCTACCATTTGCC
CCAGGAGTTTGGCGACGCCGAGTTAATGCAAATGTTCCTGCCCTTTGGCA
ATGTGATCAGCTCCAAGGTCTTCATCGATCGTGCTACAAACCAGAGCAAA
TGTTTCGGATTTGTTTCATTCGATAATCCCGCCAGCGCTCAAGCGGCCAT
TCAGGCCATGAATGGCTTCCAGATTGGCATGAAAAGACTGAAAGTTCAAT
TGAAGCGGCCAAAGGATGCCAGTCGACCCTATTAAAAGCTTTCTAGACCA
T
BS08516.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:31:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bru-3-RA | 1269 | CG43744-PA | 1..1269 | 17..1285 | 6345 | 100 | Plus |
bru-3-RO | 1212 | CG43744-PO | 40..1212 | 113..1285 | 5850 | 99.9 | Plus |
bru-3-RN | 1212 | CG43744-PN | 40..1212 | 113..1285 | 5850 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:31:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bru-3-RA | 2587 | CG43744-RA | 761..2029 | 17..1285 | 6345 | 100 | Plus |
bru-3-RO | 2665 | CG43744-RO | 935..2107 | 113..1285 | 5850 | 99.9 | Plus |
bru-3-RN | 2929 | CG43744-RN | 1199..2371 | 113..1285 | 5850 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:31:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 13541722..13542001 | 803..524 | 1400 | 100 | Minus |
3L | 28110227 | 3L | 13538942..13539122 | 1158..978 | 905 | 100 | Minus |
3L | 28110227 | 3L | 13542075..13542219 | 526..382 | 725 | 100 | Minus |
3L | 28110227 | 3L | 13602341..13602477 | 303..167 | 685 | 100 | Minus |
3L | 28110227 | 3L | 13538744..13538872 | 1285..1157 | 645 | 100 | Minus |
3L | 28110227 | 3L | 13541489..13541587 | 902..804 | 495 | 100 | Minus |
3L | 28110227 | 3L | 13584191..13584273 | 383..301 | 415 | 100 | Minus |
3L | 28110227 | 3L | 13540564..13540642 | 980..902 | 395 | 100 | Minus |
3L | 28110227 | 3L | 13664413..13664478 | 82..17 | 315 | 98.5 | Minus |
3L | 28110227 | 3L | 13638517..13638565 | 167..119 | 245 | 100 | Minus |
3L | 28110227 | 3L | 13651555..13651596 | 118..77 | 210 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 05:31:55 has no hits.
BS08516.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:02:48 Download gff for
BS08516.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bru-3-RA | 1..1269 | 17..1285 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:42:55 Download gff for
BS08516.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bru-3-RA | 761..2027 | 17..1283 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:15:11 Download gff for
BS08516.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bru-3-RA | 761..2027 | 17..1283 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:02:49 Download gff for
BS08516.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bru-3-RA | 751..2029 | 7..1285 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:13:07 Download gff for
BS08516.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bru-3-RA | 761..2027 | 17..1283 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:13:07 Download gff for
BS08516.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 13602342..13602476 | 168..302 | 100 | <- | Minus |
3L | 13638517..13638565 | 119..167 | 100 | <- | Minus |
3L | 13651555..13651596 | 77..118 | 100 | <- | Minus |
3L | 13664419..13664478 | 17..76 | 100 | | Minus |
3L | 13538746..13538871 | 1158..1283 | 100 | <- | Minus |
3L | 13538943..13539119 | 981..1157 | 100 | <- | Minus |
3L | 13540564..13540641 | 903..980 | 100 | <- | Minus |
3L | 13541489..13541587 | 804..902 | 100 | <- | Minus |
3L | 13541722..13541998 | 527..803 | 100 | <- | Minus |
3L | 13542075..13542218 | 383..526 | 100 | <- | Minus |
3L | 13584192..13584271 | 303..382 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:15:11 Download gff for
BS08516.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 13595442..13595576 | 168..302 | 100 | <- | Minus |
arm_3L | 13631617..13631665 | 119..167 | 100 | <- | Minus |
arm_3L | 13644655..13644696 | 77..118 | 100 | <- | Minus |
arm_3L | 13657519..13657578 | 17..76 | 100 | | Minus |
arm_3L | 13531846..13531971 | 1158..1283 | 100 | <- | Minus |
arm_3L | 13532043..13532219 | 981..1157 | 100 | <- | Minus |
arm_3L | 13533664..13533741 | 903..980 | 100 | <- | Minus |
arm_3L | 13534589..13534687 | 804..902 | 100 | <- | Minus |
arm_3L | 13534822..13535098 | 527..803 | 100 | <- | Minus |
arm_3L | 13535175..13535318 | 383..526 | 100 | <- | Minus |
arm_3L | 13577292..13577371 | 303..382 | 100 | <- | Minus |
BS08516.pep Sequence
Translation from 16 to 1284
> BS08516.pep
MVHIIELVGQPKVEFAQQVTVSCHHPLIPPAIKLMNRALQLKPAENESRS
EHLDRKLFVGMLSKQQTEDDVRQIFHPFGTIEECTILRGPDGASKGCAFV
KFGSQQEAQSAITNLHGSQTMPGASSSLVVKYADTEKERQIRRMQQMAGH
MNLLNPFVFNQFSPYGAYAQQQQQAALMAAAATAPGSAAAYMNPMAALAT
QIPHGLNGTGQPPSLPSPTMPNFNMGANTPNGQPGGAAAAAAAAAAADGV
FTNGIPQTAFPGHPLHLTIPPQGLPNGDAATLQHAFPGLPPFPGVAFPAV
YGQFPQALPPPLAAVAPTQREDFLMFPGCSISGPEGCNLFIYHLPQEFGD
AELMQMFLPFGNVISSKVFIDRATNQSKCFGFVSFDNPASAQAAIQAMNG
FQIGMKRLKVQLKRPKDASRPY*
BS08516.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:22:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bru-3-PA | 422 | CG43744-PA | 1..422 | 1..422 | 2216 | 100 | Plus |
bru-3-PE | 408 | CG43744-PE | 1..408 | 1..422 | 2112 | 96.7 | Plus |
bru-3-PH | 416 | CG43744-PH | 1..416 | 1..422 | 2093 | 94.9 | Plus |
bru-3-PO | 403 | CG43744-PO | 14..403 | 33..422 | 2047 | 100 | Plus |
bru-3-PN | 403 | CG43744-PN | 14..403 | 33..422 | 2047 | 100 | Plus |