Clone Sequence Records
BS08518.3prime Sequence
860 bp (761 high quality bases) assembled on 2006-01-10
> BS08518.3prime
ATGGTCTAGAAAGCTTTTAAAGCAGTCCAAAAAGGTAGTAAAGGACGGGC
AGGACAAGAGCTGCTTTAGCCGTCGAGATTCCGGTGAGGCACACGATCAA
CTTGAAGACTCCATACCAAAACGAGAGCTGCAGCGCCACATGAAGACCCA
GGAGAATTTTGTCCTTGCGACGCGCCTTCTCCAGATTCTTGATGGGCTCC
TTGCTGAGATACTGACGCACGCCGAGGATCGTATTGGAAAAGTACTCATC
CCACGCCAGCTCCCCGATGTCGATGAAGAACTTCTTCTTGTCCACTATGT
TCAAGGTCTTCGATAGCGCCAATAGACGCTTGCTGTCAAAGTGCCACTCG
GTGAAGATGAACTTTTCCAGGGTATTCAGTGAGTTCCAAACGTTCTTGTG
CAGACGAACCAAGATAGGCCTGCCGCCTCCAATTTTCGTGACCAGATCCA
GGATAATAGCGGGTATGAAATGAAACAGAATGGCGCTCAGTCGGAAGACC
CAGAGGCTCTTCACCAGACGCAGGTTGGGATACCAGACGGCACTGTTCAG
AGGATAGTCGTGCAGATAGCTGTTGATCTTGTCCGTCATCAGCTCAAAGC
GGAAGGGTTTGTATGTGCTGGAGGTCAGGTGGAAGATCTGCAGATCGGCC
GGGCGTCCTCCGTTCTTCGCCTGCAGCGAGTTGACATAATAGCCAGTGGT
TATGATGCCATTGACCACCACATCGATGGGTATGTAGTCCATAATGATGC
TGGGATCCAGGGGAAGGCGACGCAGTACGCCCTTCGATGCGCCCATGAAG
AAGCCCTGCGGACCGTTCTTCGAAATGGTCCATCCGGGAATGGGTTCCTT
CCAAGCGGCG
BS08518.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:08:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8306-PA | 1551 | CG8306-RA | 708..1551 | 860..17 | 4220 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:20:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8306-RA | 2211 | CG8306-RA | 1264..2107 | 860..17 | 4220 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:20:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16590138..16590584 | 414..860 | 2235 | 100 | Plus |
2R | 25286936 | 2R | 16589817..16590074 | 156..413 | 1290 | 100 | Plus |
2R | 25286936 | 2R | 16589622..16589760 | 17..155 | 695 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:20:06 has no hits.
BS08518.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:42:52 Download gff for
BS08518.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8306-PA | 708..1551 | 17..860 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:42:58 Download gff for
BS08518.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8306-PA | 708..1551 | 17..860 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:23:29 Download gff for
BS08518.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8306-RA | 1264..2111 | 14..860 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:45:53 Download gff for
BS08518.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8306-RA | 1264..2111 | 14..860 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:45:53 Download gff for
BS08518.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16589618..16589760 | 14..155 | 99 | <- | Plus |
2R | 16589817..16590074 | 156..413 | 100 | <- | Plus |
2R | 16590138..16590584 | 414..860 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:23:29 Download gff for
BS08518.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12477123..12477265 | 14..155 | 99 | <- | Plus |
arm_2R | 12477322..12477579 | 156..413 | 100 | <- | Plus |
arm_2R | 12477643..12478089 | 414..860 | 100 | | Plus |
BS08518.5prime Sequence
859 bp (759 high quality bases) assembled on 2006-01-10
> BS08518.5prime
GAAGTTATCAGTCGACATGGCCAGCTCACCCATCACAGACTTCTATGCGG
GTCGCAATGTCTTCATCACGGGCGCCACTGGCTTCGTGGGCGTCACCATT
GTGGAGAAACTATTGCGCGATGTTCCCAACGTGGGCACACTGTACCTGCT
GATGCGCGCCAAGAAGGGCAAGAGTGTGCAGGAGCGACTGGAGGAGCTGA
AGAAGAACTCCGTTTTCGACAAGTTCAAGGAACTGCAGCTGCAGTCGCGT
CTCTCCAAGATCGTGCCCATCGAAGGCGATGTCGGCTTGGAGCATCTGGG
CATCTCGCCGAAGGATCGCCAGACCCTGATCGACAACGTGAATGTTGTCT
TTCACTCGGCTGCCACTTTGGACTTCTTTCAATCTCTGAAGGAGACCACC
AACATCAACTTGAGGGGCACTCGGCGAGTTGTGGAGCTGTGCCAGCAGAT
CAAGAACCTGGATGCTTTGGTCCATGTGTCCAGCGCCTATGTGAATGCCT
ATCTGACCAAGGTCGAGGAGAAGCTATATCCCGCGCCCGAAGATCCAGAG
AAGATCATCCAGCTCTCGGAGACGCTCAACGATGATGCCCTCAAGGAACT
GGAACCAAAACTTCTGAAGGATCACCCCAATACCTATACCTTTACAAAGC
ATCTGGCGGAGCACGAGGTGGCCAATGTGGCCAGCAAGTTCCCCTGCGGC
ATTGTTCGTCCGAGTATGATCACCGCCGCTTGGAAGGAACCCATTCCCGG
ATGGACCATTTCGAAGAACGGTCCGCANGGCTTCTTCATGGGCGCATCGA
AGGGCGTACTGCGTCGCCTTCCCCTGGATCCCAGCATCATTATGGACTAC
ATCCCCATC
BS08518.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:08:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8306-PA | 1551 | CG8306-RA | 1..843 | 17..859 | 4171 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:25:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8306-RA | 2211 | CG8306-RA | 556..1399 | 16..859 | 4194 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:25:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16590826..16591413 | 609..22 | 2940 | 100 | Minus |
2R | 25286936 | 2R | 16590449..16590588 | 859..720 | 674 | 98.6 | Minus |
2R | 25286936 | 2R | 16590653..16590762 | 719..610 | 550 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 05:25:46 has no hits.
BS08518.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:42:53 Download gff for
BS08518.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8306-PA | 1..843 | 17..859 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:42:59 Download gff for
BS08518.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8306-PA | 1..843 | 17..859 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:56:34 Download gff for
BS08518.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8306-RA | 556..1399 | 16..859 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:23:52 Download gff for
BS08518.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8306-RA | 556..1399 | 16..859 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:23:52 Download gff for
BS08518.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16590449..16590588 | 720..859 | 98 | <- | Minus |
2R | 16590653..16590762 | 610..719 | 100 | <- | Minus |
2R | 16590826..16591410 | 25..609 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:56:34 Download gff for
BS08518.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12477954..12478093 | 720..859 | 98 | <- | Minus |
arm_2R | 12478158..12478267 | 610..719 | 100 | <- | Minus |
arm_2R | 12478331..12478915 | 25..609 | 100 | <- | Minus |
BS08518.complete Sequence
1583 bp (1583 high quality bases) assembled on 2006-01-18
GenBank Submission: FJ636191
> BS08518.complete
GAAGTTATCAGTCGACATGGCCAGCTCACCCATCACAGACTTCTATGCGG
GTCGCAATGTCTTCATCACGGGCGCCACTGGCTTCGTGGGCGTCACCATT
GTGGAGAAACTATTGCGCGATGTTCCCAACGTGGGCACACTGTACCTGCT
GATGCGCGCCAAGAAGGGCAAGAGTGTGCAGGAGCGACTGGAGGAGCTGA
AGAAGAACTCCGTTTTCGACAAGTTCAAGGAACTGCAGCTGCAGTCGCGT
CTCTCCAAGATCGTGCCCATCGAAGGCGATGTCGGCTTGGAGCATCTGGG
CATCTCGCCGAAGGATCGCCAGACCCTGATCGACAACGTGAATGTTGTCT
TTCACTCGGCTGCCACTTTGGACTTCTTTCAATCTCTGAAGGAGACCACC
AACATCAACTTGAGGGGCACTCGGCGAGTTGTGGAGCTGTGCCAGCAGAT
CAAGAACCTGGATGCTTTGGTCCATGTGTCCAGCGCCTATGTGAATGCCT
ATCTGACCAAGGTCGAGGAGAAGCTATATCCCGCGCCCGAAGATCCAGAG
AAGATCATCCAGCTCTCGGAGACGCTCAACGATGATGCCCTCAAGGAACT
GGAACCAAAACTTCTGAAGGATCACCCCAATACCTATACCTTTACAAAGC
ATCTGGCGGAGCACGAGGTGGCCAATGTGGCCAGCAAGTTCCCCTGCGGC
ATTGTTCGTCCGAGTATGATCACCGCCGCTTGGAAGGAACCCATTCCCGG
ATGGACCATTTCGAAGAACGGTCCGCAGGGCTTCTTCATGGGCGCATCGA
AGGGCGTACTGCGTCGCCTTCCCCTGGATCCCAGCATCATTATGGACTAC
ATACCCATCGATGTGGTGGTCAATGGCATCATAACCACTGGCTATTATGT
CAACTCGCTGCAGGCGAAGAACGGAGGACGCCCGGCCGATCTGCAGATCT
TCCACCTGACCTCCAGCACATACAAACCCTTCCGCTTTGAGCTGATGACG
GACAAGATCAACAGCTATCTGCACGACTATCCTCTGAACAGTGCCGTCTG
GTATCCCAACCTGCGTCTGGTGAAGAGCCTCTGGGTCTTCCGACTGAGCG
CCATTCTGTTTCATTTCATACCCGCTATTATCCTGGATCTGGTCACGAAA
ATTGGAGGCGGCAGGCCTATCTTGGTTCGTCTGCACAAGAACGTTTGGAA
CTCACTGAATACCCTGGAAAAGTTCATCTTCACCGAGTGGCACTTTGACA
GCAAGCGTCTATTGGCGCTATCGAAGACCTTGAACATAGTGGACAAGAAG
AAGTTCTTCATCGACATCGGGGAGCTGGCGTGGGATGAGTACTTTTCCAA
TACGATCCTCGGCGTGCGTCAGTATCTCAGCAAGGAGCCCATCAAGAATC
TGGAGAAGGCGCGTCGCAAGGACAAAATTCTCCTGGGTCTTCATGTGGCG
CTGCAGCTCTCGTTTTGGTATGGAGTCTTCAAGTTGATCGTGTGCCTCAC
CGGAATCTCGACGGCTAAAGCAGCTCTTGTCCTGCCCGTCCTTTACTACC
TTTTTGGACTGCTTTAAAAGCTTTCTAGACCAT
BS08518.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:00:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8306-RA | 1551 | CG8306-PA | 1..1551 | 17..1567 | 7755 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:00:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8306-RA | 2211 | CG8306-RA | 556..2107 | 16..1567 | 7760 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:00:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16590826..16591413 | 609..22 | 2940 | 100 | Minus |
2R | 25286936 | 2R | 16590138..16590588 | 1170..720 | 2255 | 100 | Minus |
2R | 25286936 | 2R | 16589817..16590074 | 1428..1171 | 1290 | 100 | Minus |
2R | 25286936 | 2R | 16589622..16589760 | 1567..1429 | 695 | 100 | Minus |
2R | 25286936 | 2R | 16590653..16590762 | 719..610 | 550 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:00:37 has no hits.
BS08518.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:02:52 Download gff for
BS08518.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8306-RA | 1..1551 | 17..1567 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:40:42 Download gff for
BS08518.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8306-RA | 623..2178 | 16..1570 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:04:28 Download gff for
BS08518.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8306-RA | 557..2105 | 17..1565 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:02:52 Download gff for
BS08518.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8306-RA | 623..2178 | 16..1570 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:30:56 Download gff for
BS08518.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8306-RA | 557..2105 | 17..1565 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:30:56 Download gff for
BS08518.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16589624..16589760 | 1429..1565 | 100 | <- | Minus |
2R | 16589817..16590074 | 1171..1428 | 100 | <- | Minus |
2R | 16590138..16590588 | 720..1170 | 100 | <- | Minus |
2R | 16590653..16590762 | 610..719 | 100 | <- | Minus |
2R | 16590826..16591417 | 17..609 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:04:28 Download gff for
BS08518.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12477129..12477265 | 1429..1565 | 100 | <- | Minus |
arm_2R | 12477322..12477579 | 1171..1428 | 100 | <- | Minus |
arm_2R | 12477643..12478093 | 720..1170 | 100 | <- | Minus |
arm_2R | 12478158..12478267 | 610..719 | 100 | <- | Minus |
arm_2R | 12478331..12478922 | 17..609 | 99 | | Minus |
BS08518.pep Sequence
Translation from 16 to 1566
> BS08518.pep
MASSPITDFYAGRNVFITGATGFVGVTIVEKLLRDVPNVGTLYLLMRAKK
GKSVQERLEELKKNSVFDKFKELQLQSRLSKIVPIEGDVGLEHLGISPKD
RQTLIDNVNVVFHSAATLDFFQSLKETTNINLRGTRRVVELCQQIKNLDA
LVHVSSAYVNAYLTKVEEKLYPAPEDPEKIIQLSETLNDDALKELEPKLL
KDHPNTYTFTKHLAEHEVANVASKFPCGIVRPSMITAAWKEPIPGWTISK
NGPQGFFMGASKGVLRRLPLDPSIIMDYIPIDVVVNGIITTGYYVNSLQA
KNGGRPADLQIFHLTSSTYKPFRFELMTDKINSYLHDYPLNSAVWYPNLR
LVKSLWVFRLSAILFHFIPAIILDLVTKIGGGRPILVRLHKNVWNSLNTL
EKFIFTEWHFDSKRLLALSKTLNIVDKKKFFIDIGELAWDEYFSNTILGV
RQYLSKEPIKNLEKARRKDKILLGLHVALQLSFWYGVFKLIVCLTGISTA
KAALVLPVLYYLFGLL*
BS08518.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:22:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8306-PA | 516 | CG8306-PA | 1..516 | 1..516 | 2660 | 100 | Plus |
CG5065-PE | 625 | CG5065-PE | 118..587 | 5..481 | 894 | 38.8 | Plus |
CG5065-PD | 625 | CG5065-PD | 118..587 | 5..481 | 894 | 38.8 | Plus |
CG5065-PC | 625 | CG5065-PC | 118..587 | 5..481 | 894 | 38.8 | Plus |
CG5065-PB | 625 | CG5065-PB | 118..587 | 5..481 | 894 | 38.8 | Plus |