Clone BS08518 Report

Search the DGRC for BS08518

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:85
Well:18
Vector:pDNR-Dual
Associated Gene/TranscriptCG8306-RA
Protein status:BS08518.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08518.3prime Sequence

860 bp (761 high quality bases) assembled on 2006-01-10

> BS08518.3prime
ATGGTCTAGAAAGCTTTTAAAGCAGTCCAAAAAGGTAGTAAAGGACGGGC
AGGACAAGAGCTGCTTTAGCCGTCGAGATTCCGGTGAGGCACACGATCAA
CTTGAAGACTCCATACCAAAACGAGAGCTGCAGCGCCACATGAAGACCCA
GGAGAATTTTGTCCTTGCGACGCGCCTTCTCCAGATTCTTGATGGGCTCC
TTGCTGAGATACTGACGCACGCCGAGGATCGTATTGGAAAAGTACTCATC
CCACGCCAGCTCCCCGATGTCGATGAAGAACTTCTTCTTGTCCACTATGT
TCAAGGTCTTCGATAGCGCCAATAGACGCTTGCTGTCAAAGTGCCACTCG
GTGAAGATGAACTTTTCCAGGGTATTCAGTGAGTTCCAAACGTTCTTGTG
CAGACGAACCAAGATAGGCCTGCCGCCTCCAATTTTCGTGACCAGATCCA
GGATAATAGCGGGTATGAAATGAAACAGAATGGCGCTCAGTCGGAAGACC
CAGAGGCTCTTCACCAGACGCAGGTTGGGATACCAGACGGCACTGTTCAG
AGGATAGTCGTGCAGATAGCTGTTGATCTTGTCCGTCATCAGCTCAAAGC
GGAAGGGTTTGTATGTGCTGGAGGTCAGGTGGAAGATCTGCAGATCGGCC
GGGCGTCCTCCGTTCTTCGCCTGCAGCGAGTTGACATAATAGCCAGTGGT
TATGATGCCATTGACCACCACATCGATGGGTATGTAGTCCATAATGATGC
TGGGATCCAGGGGAAGGCGACGCAGTACGCCCTTCGATGCGCCCATGAAG
AAGCCCTGCGGACCGTTCTTCGAAATGGTCCATCCGGGAATGGGTTCCTT
CCAAGCGGCG

BS08518.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:08:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG8306-PA 1551 CG8306-RA 708..1551 860..17 4220 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:20:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG8306-RA 2211 CG8306-RA 1264..2107 860..17 4220 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:20:05
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16590138..16590584 414..860 2235 100 Plus
2R 25286936 2R 16589817..16590074 156..413 1290 100 Plus
2R 25286936 2R 16589622..16589760 17..155 695 100 Plus
Blast to na_te.dros performed on 2015-02-10 18:20:06 has no hits.

BS08518.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:42:52 Download gff for BS08518.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8306-PA 708..1551 17..860 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:42:58 Download gff for BS08518.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8306-PA 708..1551 17..860 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:23:29 Download gff for BS08518.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8306-RA 1264..2111 14..860 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:45:53 Download gff for BS08518.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8306-RA 1264..2111 14..860 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:45:53 Download gff for BS08518.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 16589618..16589760 14..155 99 <- Plus
2R 16589817..16590074 156..413 100 <- Plus
2R 16590138..16590584 414..860 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:23:29 Download gff for BS08518.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12477123..12477265 14..155 99 <- Plus
arm_2R 12477322..12477579 156..413 100 <- Plus
arm_2R 12477643..12478089 414..860 100   Plus

BS08518.5prime Sequence

859 bp (759 high quality bases) assembled on 2006-01-10

> BS08518.5prime
GAAGTTATCAGTCGACATGGCCAGCTCACCCATCACAGACTTCTATGCGG
GTCGCAATGTCTTCATCACGGGCGCCACTGGCTTCGTGGGCGTCACCATT
GTGGAGAAACTATTGCGCGATGTTCCCAACGTGGGCACACTGTACCTGCT
GATGCGCGCCAAGAAGGGCAAGAGTGTGCAGGAGCGACTGGAGGAGCTGA
AGAAGAACTCCGTTTTCGACAAGTTCAAGGAACTGCAGCTGCAGTCGCGT
CTCTCCAAGATCGTGCCCATCGAAGGCGATGTCGGCTTGGAGCATCTGGG
CATCTCGCCGAAGGATCGCCAGACCCTGATCGACAACGTGAATGTTGTCT
TTCACTCGGCTGCCACTTTGGACTTCTTTCAATCTCTGAAGGAGACCACC
AACATCAACTTGAGGGGCACTCGGCGAGTTGTGGAGCTGTGCCAGCAGAT
CAAGAACCTGGATGCTTTGGTCCATGTGTCCAGCGCCTATGTGAATGCCT
ATCTGACCAAGGTCGAGGAGAAGCTATATCCCGCGCCCGAAGATCCAGAG
AAGATCATCCAGCTCTCGGAGACGCTCAACGATGATGCCCTCAAGGAACT
GGAACCAAAACTTCTGAAGGATCACCCCAATACCTATACCTTTACAAAGC
ATCTGGCGGAGCACGAGGTGGCCAATGTGGCCAGCAAGTTCCCCTGCGGC
ATTGTTCGTCCGAGTATGATCACCGCCGCTTGGAAGGAACCCATTCCCGG
ATGGACCATTTCGAAGAACGGTCCGCANGGCTTCTTCATGGGCGCATCGA
AGGGCGTACTGCGTCGCCTTCCCCTGGATCCCAGCATCATTATGGACTAC
ATCCCCATC

BS08518.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:08:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG8306-PA 1551 CG8306-RA 1..843 17..859 4171 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:25:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG8306-RA 2211 CG8306-RA 556..1399 16..859 4194 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:25:44
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16590826..16591413 609..22 2940 100 Minus
2R 25286936 2R 16590449..16590588 859..720 674 98.6 Minus
2R 25286936 2R 16590653..16590762 719..610 550 100 Minus
Blast to na_te.dros performed on 2015-02-12 05:25:46 has no hits.

BS08518.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:42:53 Download gff for BS08518.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8306-PA 1..843 17..859 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:42:59 Download gff for BS08518.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8306-PA 1..843 17..859 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:56:34 Download gff for BS08518.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8306-RA 556..1399 16..859 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:23:52 Download gff for BS08518.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8306-RA 556..1399 16..859 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:23:52 Download gff for BS08518.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 16590449..16590588 720..859 98 <- Minus
2R 16590653..16590762 610..719 100 <- Minus
2R 16590826..16591410 25..609 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:56:34 Download gff for BS08518.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12477954..12478093 720..859 98 <- Minus
arm_2R 12478158..12478267 610..719 100 <- Minus
arm_2R 12478331..12478915 25..609 100 <- Minus

BS08518.complete Sequence

1583 bp (1583 high quality bases) assembled on 2006-01-18

GenBank Submission: FJ636191

> BS08518.complete
GAAGTTATCAGTCGACATGGCCAGCTCACCCATCACAGACTTCTATGCGG
GTCGCAATGTCTTCATCACGGGCGCCACTGGCTTCGTGGGCGTCACCATT
GTGGAGAAACTATTGCGCGATGTTCCCAACGTGGGCACACTGTACCTGCT
GATGCGCGCCAAGAAGGGCAAGAGTGTGCAGGAGCGACTGGAGGAGCTGA
AGAAGAACTCCGTTTTCGACAAGTTCAAGGAACTGCAGCTGCAGTCGCGT
CTCTCCAAGATCGTGCCCATCGAAGGCGATGTCGGCTTGGAGCATCTGGG
CATCTCGCCGAAGGATCGCCAGACCCTGATCGACAACGTGAATGTTGTCT
TTCACTCGGCTGCCACTTTGGACTTCTTTCAATCTCTGAAGGAGACCACC
AACATCAACTTGAGGGGCACTCGGCGAGTTGTGGAGCTGTGCCAGCAGAT
CAAGAACCTGGATGCTTTGGTCCATGTGTCCAGCGCCTATGTGAATGCCT
ATCTGACCAAGGTCGAGGAGAAGCTATATCCCGCGCCCGAAGATCCAGAG
AAGATCATCCAGCTCTCGGAGACGCTCAACGATGATGCCCTCAAGGAACT
GGAACCAAAACTTCTGAAGGATCACCCCAATACCTATACCTTTACAAAGC
ATCTGGCGGAGCACGAGGTGGCCAATGTGGCCAGCAAGTTCCCCTGCGGC
ATTGTTCGTCCGAGTATGATCACCGCCGCTTGGAAGGAACCCATTCCCGG
ATGGACCATTTCGAAGAACGGTCCGCAGGGCTTCTTCATGGGCGCATCGA
AGGGCGTACTGCGTCGCCTTCCCCTGGATCCCAGCATCATTATGGACTAC
ATACCCATCGATGTGGTGGTCAATGGCATCATAACCACTGGCTATTATGT
CAACTCGCTGCAGGCGAAGAACGGAGGACGCCCGGCCGATCTGCAGATCT
TCCACCTGACCTCCAGCACATACAAACCCTTCCGCTTTGAGCTGATGACG
GACAAGATCAACAGCTATCTGCACGACTATCCTCTGAACAGTGCCGTCTG
GTATCCCAACCTGCGTCTGGTGAAGAGCCTCTGGGTCTTCCGACTGAGCG
CCATTCTGTTTCATTTCATACCCGCTATTATCCTGGATCTGGTCACGAAA
ATTGGAGGCGGCAGGCCTATCTTGGTTCGTCTGCACAAGAACGTTTGGAA
CTCACTGAATACCCTGGAAAAGTTCATCTTCACCGAGTGGCACTTTGACA
GCAAGCGTCTATTGGCGCTATCGAAGACCTTGAACATAGTGGACAAGAAG
AAGTTCTTCATCGACATCGGGGAGCTGGCGTGGGATGAGTACTTTTCCAA
TACGATCCTCGGCGTGCGTCAGTATCTCAGCAAGGAGCCCATCAAGAATC
TGGAGAAGGCGCGTCGCAAGGACAAAATTCTCCTGGGTCTTCATGTGGCG
CTGCAGCTCTCGTTTTGGTATGGAGTCTTCAAGTTGATCGTGTGCCTCAC
CGGAATCTCGACGGCTAAAGCAGCTCTTGTCCTGCCCGTCCTTTACTACC
TTTTTGGACTGCTTTAAAAGCTTTCTAGACCAT

BS08518.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:00:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG8306-RA 1551 CG8306-PA 1..1551 17..1567 7755 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:00:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG8306-RA 2211 CG8306-RA 556..2107 16..1567 7760 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:00:36
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16590826..16591413 609..22 2940 100 Minus
2R 25286936 2R 16590138..16590588 1170..720 2255 100 Minus
2R 25286936 2R 16589817..16590074 1428..1171 1290 100 Minus
2R 25286936 2R 16589622..16589760 1567..1429 695 100 Minus
2R 25286936 2R 16590653..16590762 719..610 550 100 Minus
Blast to na_te.dros performed on 2014-11-28 01:00:37 has no hits.

BS08518.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:02:52 Download gff for BS08518.complete
Subject Subject Range Query Range Percent Splice Strand
CG8306-RA 1..1551 17..1567 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:40:42 Download gff for BS08518.complete
Subject Subject Range Query Range Percent Splice Strand
CG8306-RA 623..2178 16..1570 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:04:28 Download gff for BS08518.complete
Subject Subject Range Query Range Percent Splice Strand
CG8306-RA 557..2105 17..1565 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:02:52 Download gff for BS08518.complete
Subject Subject Range Query Range Percent Splice Strand
CG8306-RA 623..2178 16..1570 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:30:56 Download gff for BS08518.complete
Subject Subject Range Query Range Percent Splice Strand
CG8306-RA 557..2105 17..1565 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:30:56 Download gff for BS08518.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16589624..16589760 1429..1565 100 <- Minus
2R 16589817..16590074 1171..1428 100 <- Minus
2R 16590138..16590588 720..1170 100 <- Minus
2R 16590653..16590762 610..719 100 <- Minus
2R 16590826..16591417 17..609 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:04:28 Download gff for BS08518.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12477129..12477265 1429..1565 100 <- Minus
arm_2R 12477322..12477579 1171..1428 100 <- Minus
arm_2R 12477643..12478093 720..1170 100 <- Minus
arm_2R 12478158..12478267 610..719 100 <- Minus
arm_2R 12478331..12478922 17..609 99   Minus

BS08518.pep Sequence

Translation from 16 to 1566

> BS08518.pep
MASSPITDFYAGRNVFITGATGFVGVTIVEKLLRDVPNVGTLYLLMRAKK
GKSVQERLEELKKNSVFDKFKELQLQSRLSKIVPIEGDVGLEHLGISPKD
RQTLIDNVNVVFHSAATLDFFQSLKETTNINLRGTRRVVELCQQIKNLDA
LVHVSSAYVNAYLTKVEEKLYPAPEDPEKIIQLSETLNDDALKELEPKLL
KDHPNTYTFTKHLAEHEVANVASKFPCGIVRPSMITAAWKEPIPGWTISK
NGPQGFFMGASKGVLRRLPLDPSIIMDYIPIDVVVNGIITTGYYVNSLQA
KNGGRPADLQIFHLTSSTYKPFRFELMTDKINSYLHDYPLNSAVWYPNLR
LVKSLWVFRLSAILFHFIPAIILDLVTKIGGGRPILVRLHKNVWNSLNTL
EKFIFTEWHFDSKRLLALSKTLNIVDKKKFFIDIGELAWDEYFSNTILGV
RQYLSKEPIKNLEKARRKDKILLGLHVALQLSFWYGVFKLIVCLTGISTA
KAALVLPVLYYLFGLL*

BS08518.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:22:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG8306-PA 516 CG8306-PA 1..516 1..516 2660 100 Plus
CG5065-PE 625 CG5065-PE 118..587 5..481 894 38.8 Plus
CG5065-PD 625 CG5065-PD 118..587 5..481 894 38.8 Plus
CG5065-PC 625 CG5065-PC 118..587 5..481 894 38.8 Plus
CG5065-PB 625 CG5065-PB 118..587 5..481 894 38.8 Plus