Clone Sequence Records
BS08525.3prime Sequence
912 bp (793 high quality bases) assembled on 2006-01-10
> BS08525.3prime
ATGGTCTAGAAAGCTTTCATAGATCGAAATCCTCGTTCTGAGGCGGATTT
AAAACTGATTTTTCAACTTCAGTAAGTAGTCCAATGGCCCGATAGTTATC
ATTTAACATGGCGTACTCCTGTAAGACCTTCACGTAGGCCAAGGCCATAT
TTTTACAGTCGATGGATTTCAGTGAATTTTGTAAGGAAGCGACTACTTTG
GGGTCCACATCGTCTTGACTGGTCTCATTTTCCTCCTCAACTGCTGCCGT
GTCGTGAGATTCAACAGTCTCCTTGATCTCATCTTTTAAGGTCGTTTCCT
TTTCCAATGACCCAATTTCCTCTTCATCGGTAAATTCACCATGCTCTATC
TCTATTTTAATTATAGCTTCTTCAGAATCCGTACGCACGCGTACTTCTAA
TTTTTTCGACTTCGCCATTATTGGCGTTTTGTTGGCTTTCTTATTTCCTG
CCGCTTTTGCTTTTTCATCATCAGACCATTTTTTACACACCTTACAAAGT
TTGGATGGACGATTCTTAGTCAGCTTTCTTAGGTATTCACACCTCTTACA
GCCACTTTTAATTAGACCGCTTTGTTGCAAGCTTACAGCTTCCTTCCACT
TGTTGGTTTTTGCATTTAACATATTTCTAGGTTTATTGATCAGCTTTGGT
TTCTCAGTAAGTTGCTCAGTTTTGTCCATCTTGGCCTCCGTCAGCTGGAC
CAGGCGATCCCGCCACCTGCGGCAGATTCTCTTGGTCTTGCGCTGTTCCT
GCACCAGTGAGATTGAGCTGCCCACTTGGAACTCGCGCTGTGTGGGATCG
GTCTTTGCCTGNATTTTGTTCCTCATCTCCACCATTTGCTCTATGTATTG
TTTGACCTTGATGATTTCGGCATCCTGCAGGCCAATCAGAATGTCCCTGT
ACTTCCCAATAA
BS08525.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:08:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3217-PA | 1164 | CkIIalpha-i3-RA | 269..1164 | 912..17 | 4461 | 99.8 | Minus |
CG3217-PB | 1176 | CkIIalpha-i3-RB | 281..1176 | 912..17 | 4461 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:49:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CkIIalpha-i3-RC | 1540 | CG3217-RC | 593..1488 | 912..17 | 4469 | 99.9 | Minus |
CkIIalpha-i3-RB | 1289 | CG3217-RB | 285..1180 | 912..17 | 4469 | 99.9 | Minus |
CkIIalpha-i3-RA | 1275 | CG3217-RA | 328..1223 | 912..17 | 4469 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:49:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 709738..710015 | 635..912 | 1379 | 99.6 | Plus |
3L | 28110227 | 3L | 708710..708930 | 17..237 | 1105 | 100 | Plus |
3L | 28110227 | 3L | 709332..709495 | 415..578 | 820 | 100 | Plus |
3L | 28110227 | 3L | 709080..709156 | 269..345 | 385 | 100 | Plus |
3L | 28110227 | 3L | 709212..709284 | 344..416 | 365 | 100 | Plus |
3L | 28110227 | 3L | 709557..709613 | 578..634 | 285 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 23:49:03 has no hits.
BS08525.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:43:02 Download gff for
BS08525.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3217-PA | 271..1164 | 17..910 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:43:12 Download gff for
BS08525.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3217-PB | 283..1176 | 17..910 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:37:44 Download gff for
BS08525.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CkIIalpha-i3-RA | 345..1244 | 11..912 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:58:29 Download gff for
BS08525.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CkIIalpha-i3-RA | 328..1227 | 11..912 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:58:29 Download gff for
BS08525.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 709557..709613 | 578..634 | 100 | <- | Plus |
3L | 709738..710015 | 635..912 | 99 | | Plus |
3L | 708706..708928 | 11..235 | 98 | <- | Plus |
3L | 708991..709023 | 236..268 | 100 | <- | Plus |
3L | 709080..709154 | 269..343 | 100 | <- | Plus |
3L | 709212..709283 | 344..415 | 100 | <- | Plus |
3L | 709333..709494 | 416..577 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:37:44 Download gff for
BS08525.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 708706..708928 | 11..235 | 98 | <- | Plus |
arm_3L | 708991..709023 | 236..268 | 100 | <- | Plus |
arm_3L | 709080..709154 | 269..343 | 100 | <- | Plus |
arm_3L | 709212..709283 | 344..415 | 100 | <- | Plus |
arm_3L | 709333..709494 | 416..577 | 100 | <- | Plus |
arm_3L | 709557..709613 | 578..634 | 100 | <- | Plus |
arm_3L | 709738..710015 | 635..912 | 99 | | Plus |
BS08525.5prime Sequence
868 bp (733 high quality bases) assembled on 2006-01-10
> BS08525.5prime
GAAGTTATCAGTCGACATGGAAAAGGAATCCAATTTATCGGACAACTTGC
AGTCCCGGTTATTTGCACTGGGTCCTGCCCCGCCAGGATTTCGTCCACCG
GATGCTACCGCCTTTGCCACAGCGGAGTCAAATCTTCGTAATGCCATCCG
CTACCTTAATGATACCTATGGCGAGCTCGATCAGCTGCGCACTGTCATCC
AGAAGGAGAAGAATAACTCGAAGCGTACGTCCTACAAGGCGCAGTCCATG
ATGCTTGCCATGCAAGTGATACGTTTCAAAGGACTTATTGGGAAGTACAG
GGACATTCTGATTGGCCTGCAGGATGCCGAAATCATCAAGGTCAAACAAT
ACATAGAGCAAATGGTGGAGATGAGGAACAAAATCCAGGCAAAGACCGAT
CCCACACAGCGCGAGTTCCAAGTGGGCAGCTCAATCTCACTGGTGCAGGA
ACAGCGCAAGACCAAGAGAATCTGCCGCAGGTGGCGGGATCGCCTGGTCC
AGCTGACGGAGGCCAAGATGGACAAAACTGAGCAACTTACTGAGAAACCA
AAGCTGATCAATAAACCTAGAAATATGTTAAATGCAAAAACCAACAAGTG
GAAGGAAGCTGTAAGCTTGCAACAAAGCGGTCTAATTAAAAGTGGCTGTA
AGAGGTGTGAATACCTAAGAAAGCTGACTAAGAATCGTCCATCCAAACTT
TGTAAGGTGTGTAAAAAATGGTCTGATGATGAAAAAGCAAAAGCGGCAGG
AAATAAGAAAGCCAACAAAACGCCAATAATGGCGAAGTCGAAAAATTAAA
AGTACGCGTGCGTACGGATTCTGAAGAAGCTATAATTAAAATAGAGATAG
AGCATGGTGAATTTCCCG
BS08525.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:08:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3217-PA | 1164 | CkIIalpha-i3-RA | 1..779 | 17..795 | 3895 | 100 | Plus |
CG3217-PB | 1176 | CkIIalpha-i3-RB | 49..791 | 53..795 | 3715 | 100 | Plus |
CG3217-PA | 1164 | CkIIalpha-i3-RA | 776..849 | 791..864 | 345 | 98.6 | Plus |
CG3217-PB | 1176 | CkIIalpha-i3-RB | 788..861 | 791..864 | 345 | 98.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:46:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CkIIalpha-i3-RC | 1540 | CG3217-RC | 325..1177 | 17..868 | 4210 | 99.6 | Plus |
CkIIalpha-i3-RA | 1275 | CG3217-RA | 60..912 | 17..868 | 4210 | 99.6 | Plus |
CkIIalpha-i3-RB | 1289 | CG3217-RB | 53..869 | 53..868 | 4030 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:46:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 709738..710283 | 562..17 | 2730 | 100 | Minus |
3L | 28110227 | 3L | 709332..709495 | 782..619 | 820 | 100 | Minus |
3L | 28110227 | 3L | 709212..709284 | 852..781 | 300 | 97.3 | Minus |
3L | 28110227 | 3L | 709557..709613 | 619..563 | 285 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 23:46:45 has no hits.
BS08525.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:43:04 Download gff for
BS08525.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3217-PA | 1..853 | 17..868 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:43:13 Download gff for
BS08525.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3217-PA | 1..853 | 17..868 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:39:55 Download gff for
BS08525.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CkIIalpha-i3-RA | 77..929 | 17..868 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 01:03:22 Download gff for
BS08525.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CkIIalpha-i3-RA | 60..912 | 17..868 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 01:03:22 Download gff for
BS08525.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 709212..709283 | 782..852 | 97 | <- | Minus |
3L | 709333..709494 | 620..781 | 100 | <- | Minus |
3L | 709557..709613 | 563..619 | 100 | <- | Minus |
3L | 709738..710283 | 17..562 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:39:55 Download gff for
BS08525.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 709212..709283 | 782..852 | 97 | <- | Minus |
arm_3L | 709333..709494 | 620..781 | 100 | <- | Minus |
arm_3L | 709557..709613 | 563..619 | 100 | <- | Minus |
arm_3L | 709738..710283 | 17..562 | 100 | | Minus |
BS08525.complete Sequence
1196 bp (1196 high quality bases) assembled on 2006-01-18
GenBank Submission: FJ636192
> BS08525.complete
GAAGTTATCAGTCGACATGGAAAAGGAATCCAATTTATCGGACAACTTGC
AGTCCCGGTTATTTGCACTGGGTCCTGCCCCGCCAGGATTTCGTCCACCG
GATGCTACCGCCTTTGCCACAGCGGAGTCAAATCTTCGTAATGCCATCCG
CTACCTTAATGATACCTATGGCGAGCTCGATCAGCTGCGCACTGTCATCC
AGAAGGAGAAGAATAACTCGAAGCGTACGTCCTACAAGGCGCAGTCCATG
ATGCTTGCCATGCAAGTGATACGTTTCAAAGGACTTATTGGGAAGTACAG
GGACATTCTGATTGGCCTGCAGGATGCCGAAATCATCAAGGTCAAACAAT
ACATAGAGCAAATGGTGGAGATGAGGAACAAAATCCAGGCAAAGACCGAT
CCCACACAGCGCGAGTTCCAAGTGGGCAGCTCAATCTCACTGGTGCAGGA
ACAGCGCAAGACCAAGAGAATCTGCCGCAGGTGGCGGGATCGCCTGGTCC
AGCTGACGGAGGCCAAGATGGACAAAACTGAGCAACTTACTGAGAAACCA
AAGCTGATCAATAAACCTAGAAATATGTTAAATGCAAAAACCAACAAGTG
GAAGGAAGCTGTAAGCTTGCAACAAAGCGGTCTAATTAAAAGTGGCTGTA
AGAGGTGTGAATACCTAAGAAAGCTGACTAAGAATCGTCCATCCAAACTT
TGTAAGGTGTGTAAAAAATGGTCTGATGATGAAAAAGCAAAAGCGGCAGG
AAATAAGAAAGCCAACAAAACGCCAATAATGGCGAAGTCGAAAAAATTAG
AAGTACGCGTGCGTACGGATTCTGAAGAAGCTATAATTAAAATAGAGATA
GAGCATGGTGAATTTACCGATGAAGAGGAAATTGGGTCATTGGAAAAGGA
AACGACCTTAAAAGATGAGATCAAGGAGACTGTTGAATCTCACGACACGG
CAGCAGTTGAGGAGGAAAATGAGACCAGTCAAGACGATGTGGACCCCAAA
GTAGTCGCTTCCTTACAAAATTCACTGAAATCCATCGACTGTAAAAATAT
GGCCTTGGCCTACGTGAAGGTCTTACAGGAGTACGCCATGTTAAATGATA
ACTATCGGGCCATTGGACTACTTACTGAAGTTGAAAAATCAGTTTTAAAT
CCGCCTCAGAACGAGGATTTCGATCTATGAAAGCTTTCTAGACCAT
BS08525.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:46:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CkIIalpha-i3-RC | 1164 | CG3217-PC | 1..1164 | 17..1180 | 5820 | 100 | Plus |
CkIIalpha-i3-RA | 1164 | CG3217-PA | 1..1164 | 17..1180 | 5820 | 100 | Plus |
CkIIalpha-i3-RB | 1176 | CG3217-PB | 49..1176 | 53..1180 | 5640 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:46:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CkIIalpha-i3-RC | 1540 | CG3217-RC | 325..1488 | 17..1180 | 5820 | 100 | Plus |
CkIIalpha-i3-RA | 1275 | CG3217-RA | 60..1223 | 17..1180 | 5820 | 100 | Plus |
CkIIalpha-i3-RB | 1289 | CG3217-RB | 53..1180 | 53..1180 | 5640 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:46:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 709738..710283 | 562..17 | 2730 | 100 | Minus |
3L | 28110227 | 3L | 708710..708930 | 1180..960 | 1105 | 100 | Minus |
3L | 28110227 | 3L | 709332..709495 | 782..619 | 820 | 100 | Minus |
3L | 28110227 | 3L | 709080..709156 | 928..852 | 385 | 100 | Minus |
3L | 28110227 | 3L | 709212..709284 | 853..781 | 365 | 100 | Minus |
3L | 28110227 | 3L | 709557..709613 | 619..563 | 285 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:46:51 has no hits.
BS08525.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:02:54 Download gff for
BS08525.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CkIIalpha-i3-RA | 1..1164 | 17..1180 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:40:47 Download gff for
BS08525.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CkIIalpha-i3-RA | 173..1340 | 17..1186 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:51:39 Download gff for
BS08525.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CkIIalpha-i3-RA | 77..1239 | 17..1179 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:02:54 Download gff for
BS08525.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CkIIalpha-i3-RA | 173..1340 | 17..1186 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:18:29 Download gff for
BS08525.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CkIIalpha-i3-RA | 60..1222 | 17..1179 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:18:29 Download gff for
BS08525.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 708711..708928 | 962..1179 | 100 | <- | Minus |
3L | 708991..709023 | 929..961 | 100 | <- | Minus |
3L | 709080..709154 | 854..928 | 100 | <- | Minus |
3L | 709212..709283 | 782..853 | 100 | <- | Minus |
3L | 709333..709494 | 620..781 | 100 | <- | Minus |
3L | 709557..709613 | 563..619 | 100 | <- | Minus |
3L | 709738..710283 | 17..562 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:51:39 Download gff for
BS08525.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 708711..708928 | 962..1179 | 100 | <- | Minus |
arm_3L | 708991..709023 | 929..961 | 100 | <- | Minus |
arm_3L | 709080..709154 | 854..928 | 100 | <- | Minus |
arm_3L | 709212..709283 | 782..853 | 100 | <- | Minus |
arm_3L | 709333..709494 | 620..781 | 100 | <- | Minus |
arm_3L | 709557..709613 | 563..619 | 100 | <- | Minus |
arm_3L | 709738..710283 | 17..562 | 100 | | Minus |
BS08525.pep Sequence
Translation from 16 to 1179
> BS08525.pep
MEKESNLSDNLQSRLFALGPAPPGFRPPDATAFATAESNLRNAIRYLNDT
YGELDQLRTVIQKEKNNSKRTSYKAQSMMLAMQVIRFKGLIGKYRDILIG
LQDAEIIKVKQYIEQMVEMRNKIQAKTDPTQREFQVGSSISLVQEQRKTK
RICRRWRDRLVQLTEAKMDKTEQLTEKPKLINKPRNMLNAKTNKWKEAVS
LQQSGLIKSGCKRCEYLRKLTKNRPSKLCKVCKKWSDDEKAKAAGNKKAN
KTPIMAKSKKLEVRVRTDSEEAIIKIEIEHGEFTDEEEIGSLEKETTLKD
EIKETVESHDTAAVEEENETSQDDVDPKVVASLQNSLKSIDCKNMALAYV
KVLQEYAMLNDNYRAIGLLTEVEKSVLNPPQNEDFDL*
BS08525.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:22:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CkIIalpha-i3-PC | 387 | CG3217-PC | 1..387 | 1..387 | 1962 | 100 | Plus |
CkIIalpha-i3-PA | 387 | CG3217-PA | 1..387 | 1..387 | 1962 | 100 | Plus |
CkIIalpha-i3-PB | 391 | CG3217-PB | 17..391 | 13..387 | 1903 | 100 | Plus |