Clone BS08525 Report

Search the DGRC for BS08525

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:85
Well:25
Vector:pDNR-Dual
Associated Gene/TranscriptCkIIalpha-i3-RA
Protein status:BS08525.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08525.3prime Sequence

912 bp (793 high quality bases) assembled on 2006-01-10

> BS08525.3prime
ATGGTCTAGAAAGCTTTCATAGATCGAAATCCTCGTTCTGAGGCGGATTT
AAAACTGATTTTTCAACTTCAGTAAGTAGTCCAATGGCCCGATAGTTATC
ATTTAACATGGCGTACTCCTGTAAGACCTTCACGTAGGCCAAGGCCATAT
TTTTACAGTCGATGGATTTCAGTGAATTTTGTAAGGAAGCGACTACTTTG
GGGTCCACATCGTCTTGACTGGTCTCATTTTCCTCCTCAACTGCTGCCGT
GTCGTGAGATTCAACAGTCTCCTTGATCTCATCTTTTAAGGTCGTTTCCT
TTTCCAATGACCCAATTTCCTCTTCATCGGTAAATTCACCATGCTCTATC
TCTATTTTAATTATAGCTTCTTCAGAATCCGTACGCACGCGTACTTCTAA
TTTTTTCGACTTCGCCATTATTGGCGTTTTGTTGGCTTTCTTATTTCCTG
CCGCTTTTGCTTTTTCATCATCAGACCATTTTTTACACACCTTACAAAGT
TTGGATGGACGATTCTTAGTCAGCTTTCTTAGGTATTCACACCTCTTACA
GCCACTTTTAATTAGACCGCTTTGTTGCAAGCTTACAGCTTCCTTCCACT
TGTTGGTTTTTGCATTTAACATATTTCTAGGTTTATTGATCAGCTTTGGT
TTCTCAGTAAGTTGCTCAGTTTTGTCCATCTTGGCCTCCGTCAGCTGGAC
CAGGCGATCCCGCCACCTGCGGCAGATTCTCTTGGTCTTGCGCTGTTCCT
GCACCAGTGAGATTGAGCTGCCCACTTGGAACTCGCGCTGTGTGGGATCG
GTCTTTGCCTGNATTTTGTTCCTCATCTCCACCATTTGCTCTATGTATTG
TTTGACCTTGATGATTTCGGCATCCTGCAGGCCAATCAGAATGTCCCTGT
ACTTCCCAATAA

BS08525.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:08:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG3217-PA 1164 CkIIalpha-i3-RA 269..1164 912..17 4461 99.8 Minus
CG3217-PB 1176 CkIIalpha-i3-RB 281..1176 912..17 4461 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:49:07
Subject Length Description Subject Range Query Range Score Percent Strand
CkIIalpha-i3-RC 1540 CG3217-RC 593..1488 912..17 4469 99.9 Minus
CkIIalpha-i3-RB 1289 CG3217-RB 285..1180 912..17 4469 99.9 Minus
CkIIalpha-i3-RA 1275 CG3217-RA 328..1223 912..17 4469 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:49:00
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 709738..710015 635..912 1379 99.6 Plus
3L 28110227 3L 708710..708930 17..237 1105 100 Plus
3L 28110227 3L 709332..709495 415..578 820 100 Plus
3L 28110227 3L 709080..709156 269..345 385 100 Plus
3L 28110227 3L 709212..709284 344..416 365 100 Plus
3L 28110227 3L 709557..709613 578..634 285 100 Plus
Blast to na_te.dros performed on 2015-02-11 23:49:03 has no hits.

BS08525.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:43:02 Download gff for BS08525.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3217-PA 271..1164 17..910 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:43:12 Download gff for BS08525.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3217-PB 283..1176 17..910 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:37:44 Download gff for BS08525.3prime
Subject Subject Range Query Range Percent Splice Strand
CkIIalpha-i3-RA 345..1244 11..912 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:58:29 Download gff for BS08525.3prime
Subject Subject Range Query Range Percent Splice Strand
CkIIalpha-i3-RA 328..1227 11..912 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:58:29 Download gff for BS08525.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 709557..709613 578..634 100 <- Plus
3L 709738..710015 635..912 99   Plus
3L 708706..708928 11..235 98 <- Plus
3L 708991..709023 236..268 100 <- Plus
3L 709080..709154 269..343 100 <- Plus
3L 709212..709283 344..415 100 <- Plus
3L 709333..709494 416..577 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:37:44 Download gff for BS08525.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 708706..708928 11..235 98 <- Plus
arm_3L 708991..709023 236..268 100 <- Plus
arm_3L 709080..709154 269..343 100 <- Plus
arm_3L 709212..709283 344..415 100 <- Plus
arm_3L 709333..709494 416..577 100 <- Plus
arm_3L 709557..709613 578..634 100 <- Plus
arm_3L 709738..710015 635..912 99   Plus

BS08525.5prime Sequence

868 bp (733 high quality bases) assembled on 2006-01-10

> BS08525.5prime
GAAGTTATCAGTCGACATGGAAAAGGAATCCAATTTATCGGACAACTTGC
AGTCCCGGTTATTTGCACTGGGTCCTGCCCCGCCAGGATTTCGTCCACCG
GATGCTACCGCCTTTGCCACAGCGGAGTCAAATCTTCGTAATGCCATCCG
CTACCTTAATGATACCTATGGCGAGCTCGATCAGCTGCGCACTGTCATCC
AGAAGGAGAAGAATAACTCGAAGCGTACGTCCTACAAGGCGCAGTCCATG
ATGCTTGCCATGCAAGTGATACGTTTCAAAGGACTTATTGGGAAGTACAG
GGACATTCTGATTGGCCTGCAGGATGCCGAAATCATCAAGGTCAAACAAT
ACATAGAGCAAATGGTGGAGATGAGGAACAAAATCCAGGCAAAGACCGAT
CCCACACAGCGCGAGTTCCAAGTGGGCAGCTCAATCTCACTGGTGCAGGA
ACAGCGCAAGACCAAGAGAATCTGCCGCAGGTGGCGGGATCGCCTGGTCC
AGCTGACGGAGGCCAAGATGGACAAAACTGAGCAACTTACTGAGAAACCA
AAGCTGATCAATAAACCTAGAAATATGTTAAATGCAAAAACCAACAAGTG
GAAGGAAGCTGTAAGCTTGCAACAAAGCGGTCTAATTAAAAGTGGCTGTA
AGAGGTGTGAATACCTAAGAAAGCTGACTAAGAATCGTCCATCCAAACTT
TGTAAGGTGTGTAAAAAATGGTCTGATGATGAAAAAGCAAAAGCGGCAGG
AAATAAGAAAGCCAACAAAACGCCAATAATGGCGAAGTCGAAAAATTAAA
AGTACGCGTGCGTACGGATTCTGAAGAAGCTATAATTAAAATAGAGATAG
AGCATGGTGAATTTCCCG

BS08525.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:08:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG3217-PA 1164 CkIIalpha-i3-RA 1..779 17..795 3895 100 Plus
CG3217-PB 1176 CkIIalpha-i3-RB 49..791 53..795 3715 100 Plus
CG3217-PA 1164 CkIIalpha-i3-RA 776..849 791..864 345 98.6 Plus
CG3217-PB 1176 CkIIalpha-i3-RB 788..861 791..864 345 98.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:46:46
Subject Length Description Subject Range Query Range Score Percent Strand
CkIIalpha-i3-RC 1540 CG3217-RC 325..1177 17..868 4210 99.6 Plus
CkIIalpha-i3-RA 1275 CG3217-RA 60..912 17..868 4210 99.6 Plus
CkIIalpha-i3-RB 1289 CG3217-RB 53..869 53..868 4030 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:46:43
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 709738..710283 562..17 2730 100 Minus
3L 28110227 3L 709332..709495 782..619 820 100 Minus
3L 28110227 3L 709212..709284 852..781 300 97.3 Minus
3L 28110227 3L 709557..709613 619..563 285 100 Minus
Blast to na_te.dros performed on 2015-02-10 23:46:45 has no hits.

BS08525.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:43:04 Download gff for BS08525.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3217-PA 1..853 17..868 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:43:13 Download gff for BS08525.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3217-PA 1..853 17..868 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:39:55 Download gff for BS08525.5prime
Subject Subject Range Query Range Percent Splice Strand
CkIIalpha-i3-RA 77..929 17..868 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 01:03:22 Download gff for BS08525.5prime
Subject Subject Range Query Range Percent Splice Strand
CkIIalpha-i3-RA 60..912 17..868 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 01:03:22 Download gff for BS08525.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 709212..709283 782..852 97 <- Minus
3L 709333..709494 620..781 100 <- Minus
3L 709557..709613 563..619 100 <- Minus
3L 709738..710283 17..562 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:39:55 Download gff for BS08525.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 709212..709283 782..852 97 <- Minus
arm_3L 709333..709494 620..781 100 <- Minus
arm_3L 709557..709613 563..619 100 <- Minus
arm_3L 709738..710283 17..562 100   Minus

BS08525.complete Sequence

1196 bp (1196 high quality bases) assembled on 2006-01-18

GenBank Submission: FJ636192

> BS08525.complete
GAAGTTATCAGTCGACATGGAAAAGGAATCCAATTTATCGGACAACTTGC
AGTCCCGGTTATTTGCACTGGGTCCTGCCCCGCCAGGATTTCGTCCACCG
GATGCTACCGCCTTTGCCACAGCGGAGTCAAATCTTCGTAATGCCATCCG
CTACCTTAATGATACCTATGGCGAGCTCGATCAGCTGCGCACTGTCATCC
AGAAGGAGAAGAATAACTCGAAGCGTACGTCCTACAAGGCGCAGTCCATG
ATGCTTGCCATGCAAGTGATACGTTTCAAAGGACTTATTGGGAAGTACAG
GGACATTCTGATTGGCCTGCAGGATGCCGAAATCATCAAGGTCAAACAAT
ACATAGAGCAAATGGTGGAGATGAGGAACAAAATCCAGGCAAAGACCGAT
CCCACACAGCGCGAGTTCCAAGTGGGCAGCTCAATCTCACTGGTGCAGGA
ACAGCGCAAGACCAAGAGAATCTGCCGCAGGTGGCGGGATCGCCTGGTCC
AGCTGACGGAGGCCAAGATGGACAAAACTGAGCAACTTACTGAGAAACCA
AAGCTGATCAATAAACCTAGAAATATGTTAAATGCAAAAACCAACAAGTG
GAAGGAAGCTGTAAGCTTGCAACAAAGCGGTCTAATTAAAAGTGGCTGTA
AGAGGTGTGAATACCTAAGAAAGCTGACTAAGAATCGTCCATCCAAACTT
TGTAAGGTGTGTAAAAAATGGTCTGATGATGAAAAAGCAAAAGCGGCAGG
AAATAAGAAAGCCAACAAAACGCCAATAATGGCGAAGTCGAAAAAATTAG
AAGTACGCGTGCGTACGGATTCTGAAGAAGCTATAATTAAAATAGAGATA
GAGCATGGTGAATTTACCGATGAAGAGGAAATTGGGTCATTGGAAAAGGA
AACGACCTTAAAAGATGAGATCAAGGAGACTGTTGAATCTCACGACACGG
CAGCAGTTGAGGAGGAAAATGAGACCAGTCAAGACGATGTGGACCCCAAA
GTAGTCGCTTCCTTACAAAATTCACTGAAATCCATCGACTGTAAAAATAT
GGCCTTGGCCTACGTGAAGGTCTTACAGGAGTACGCCATGTTAAATGATA
ACTATCGGGCCATTGGACTACTTACTGAAGTTGAAAAATCAGTTTTAAAT
CCGCCTCAGAACGAGGATTTCGATCTATGAAAGCTTTCTAGACCAT

BS08525.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:46:52
Subject Length Description Subject Range Query Range Score Percent Strand
CkIIalpha-i3-RC 1164 CG3217-PC 1..1164 17..1180 5820 100 Plus
CkIIalpha-i3-RA 1164 CG3217-PA 1..1164 17..1180 5820 100 Plus
CkIIalpha-i3-RB 1176 CG3217-PB 49..1176 53..1180 5640 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:46:54
Subject Length Description Subject Range Query Range Score Percent Strand
CkIIalpha-i3-RC 1540 CG3217-RC 325..1488 17..1180 5820 100 Plus
CkIIalpha-i3-RA 1275 CG3217-RA 60..1223 17..1180 5820 100 Plus
CkIIalpha-i3-RB 1289 CG3217-RB 53..1180 53..1180 5640 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:46:50
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 709738..710283 562..17 2730 100 Minus
3L 28110227 3L 708710..708930 1180..960 1105 100 Minus
3L 28110227 3L 709332..709495 782..619 820 100 Minus
3L 28110227 3L 709080..709156 928..852 385 100 Minus
3L 28110227 3L 709212..709284 853..781 365 100 Minus
3L 28110227 3L 709557..709613 619..563 285 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:46:51 has no hits.

BS08525.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:02:54 Download gff for BS08525.complete
Subject Subject Range Query Range Percent Splice Strand
CkIIalpha-i3-RA 1..1164 17..1180 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:40:47 Download gff for BS08525.complete
Subject Subject Range Query Range Percent Splice Strand
CkIIalpha-i3-RA 173..1340 17..1186 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:51:39 Download gff for BS08525.complete
Subject Subject Range Query Range Percent Splice Strand
CkIIalpha-i3-RA 77..1239 17..1179 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:02:54 Download gff for BS08525.complete
Subject Subject Range Query Range Percent Splice Strand
CkIIalpha-i3-RA 173..1340 17..1186 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:18:29 Download gff for BS08525.complete
Subject Subject Range Query Range Percent Splice Strand
CkIIalpha-i3-RA 60..1222 17..1179 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:18:29 Download gff for BS08525.complete
Subject Subject Range Query Range Percent Splice Strand
3L 708711..708928 962..1179 100 <- Minus
3L 708991..709023 929..961 100 <- Minus
3L 709080..709154 854..928 100 <- Minus
3L 709212..709283 782..853 100 <- Minus
3L 709333..709494 620..781 100 <- Minus
3L 709557..709613 563..619 100 <- Minus
3L 709738..710283 17..562 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:51:39 Download gff for BS08525.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 708711..708928 962..1179 100 <- Minus
arm_3L 708991..709023 929..961 100 <- Minus
arm_3L 709080..709154 854..928 100 <- Minus
arm_3L 709212..709283 782..853 100 <- Minus
arm_3L 709333..709494 620..781 100 <- Minus
arm_3L 709557..709613 563..619 100 <- Minus
arm_3L 709738..710283 17..562 100   Minus

BS08525.pep Sequence

Translation from 16 to 1179

> BS08525.pep
MEKESNLSDNLQSRLFALGPAPPGFRPPDATAFATAESNLRNAIRYLNDT
YGELDQLRTVIQKEKNNSKRTSYKAQSMMLAMQVIRFKGLIGKYRDILIG
LQDAEIIKVKQYIEQMVEMRNKIQAKTDPTQREFQVGSSISLVQEQRKTK
RICRRWRDRLVQLTEAKMDKTEQLTEKPKLINKPRNMLNAKTNKWKEAVS
LQQSGLIKSGCKRCEYLRKLTKNRPSKLCKVCKKWSDDEKAKAAGNKKAN
KTPIMAKSKKLEVRVRTDSEEAIIKIEIEHGEFTDEEEIGSLEKETTLKD
EIKETVESHDTAAVEEENETSQDDVDPKVVASLQNSLKSIDCKNMALAYV
KVLQEYAMLNDNYRAIGLLTEVEKSVLNPPQNEDFDL*

BS08525.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:22:11
Subject Length Description Subject Range Query Range Score Percent Strand
CkIIalpha-i3-PC 387 CG3217-PC 1..387 1..387 1962 100 Plus
CkIIalpha-i3-PA 387 CG3217-PA 1..387 1..387 1962 100 Plus
CkIIalpha-i3-PB 391 CG3217-PB 17..391 13..387 1903 100 Plus