Clone BS08533 Report

Search the DGRC for BS08533

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:85
Well:33
Vector:pDNR-Dual
Associated Gene/Transcriptmei-S332-RA
Protein status:BS08533.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08533.3prime Sequence

915 bp (821 high quality bases) assembled on 2006-01-10

> BS08533.3prime
ATGGTCTAGAAAGCTTCTACTTTTTGGCCTTGGCCTTGCCTTTCGAGCCA
TTGCGCAACTTGTTCTTCAGACTTGGCTCCACCAAACTGGTGGGCCTGCA
GCTTCTACTCGGCCTTGCGCTGTTGTTGCAGAAAGAACTAGACATATCCG
TATTTTCTGATTTCTTATTAGCCGCAGTTCGGCTTCTAGTTCTTATAGAT
GGCATTTCCTCGACGAGAAAGGATTTCGGAGTGCTGGTGCTTCCGGCCAT
TTTGCCTATCCCATTGAACAGGCTTCTTCGCGGCGTTAATCCGTTGACAT
CAGGAAATATTCCAGACGATTGACTAGGCCTGGTGACTGCCAGTCGTGGG
CACTGTATGCTTGGCTCCTGTGGAGAATCTTCCACAGCTACGGAAATAGC
CAACCATGATCCCTTCCCAGTCTCTTTTCCCCGACTGAGGGACACTGCTA
CAGGGATATTGGTGTCCACTTCCCGCAGAGCCCGTCCACTGGGCGTGACG
GTGACTTGGGCGTTTGGCGGACTACTTTCAAACGTTGTGTCGCAATAGAT
GGCCTCGCATGATGATGACGAGTCTGTGGACTCCCCTTCACTGCCATTTT
CCTCTATAATGCTAAACAGACGATTGTTCTCTTCATTTTGCTCAGTCTGT
GTCTCCTCCACGGGGCTTACTGCTTCGTCGAAATCATCGTCCGAGTCGTC
CTCATCAAACACTAATTCCGCTGGTCTTCGTGGCGGTGGTGTAGGCTTGT
TGGCTCTTCTATCCTCTGGTATCCTAGTGGTCACCACCTCGGACTGCACT
TCTGCGCTGGAGCGGCGACTAGTGGACGATACAGTACTGGTCACTGAGGA
AGATCTTCTTGGCGAGATTGGTCTGGTGGTGCGGGCCAACGCACACGTCC
GTCGCATGTCCTTGC

BS08533.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:08:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG5303-PA 1206 mei-S332-RA 308..1206 915..17 4495 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 14:27:11
Subject Length Description Subject Range Query Range Score Percent Strand
mei-S332-RB 1594 CG5303-RB 394..1293 915..16 4500 100 Minus
mei-S332-RA 1504 CG5303-RA 503..1402 915..16 4500 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 14:27:04
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22123534..22124265 747..16 3660 100 Minus
2R 25286936 2R 22123305..22123474 915..746 850 100 Minus
Blast to na_te.dros performed on 2015-02-08 14:27:08 has no hits.

BS08533.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:43:12 Download gff for BS08533.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5303-PA 308..1206 17..915 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:43:28 Download gff for BS08533.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5303-PA 308..1206 17..915 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:56:05 Download gff for BS08533.3prime
Subject Subject Range Query Range Percent Splice Strand
mei-S332-RA 503..1402 16..915 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:36:39 Download gff for BS08533.3prime
Subject Subject Range Query Range Percent Splice Strand
mei-S332-RA 503..1402 16..915 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:36:39 Download gff for BS08533.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 22123305..22123474 746..915 100 -> Minus
2R 22123536..22124265 16..745 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:56:05 Download gff for BS08533.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18010810..18010979 746..915 100 -> Minus
arm_2R 18011041..18011770 16..745 100   Minus

BS08533.5prime Sequence

855 bp (775 high quality bases) assembled on 2006-01-10

> BS08533.5prime
GAAGTTATCAGTCGACATGGGATCCAAAGTGGAGCAGCAGTACAAGCTGC
TGAATGCGGAGCTAATGGACCAAGTGCAGAAGCAGCGCTTGGAGATCGGC
GAGTACAGGAAGCGGGTGATATCTTTGGAGCGAGAGATCATGGACATTCG
GGAGGAGCACGTCCTGCAAAACCATCGCCAGCGCATGGAGAACATCAGTA
TCGTACGCAGCCTGATGCTGAGCCTGAACGTGGACTCCGATTCCCTGGCA
GTGCGTCAGGAGCCCGCTCCCGCAGCTCAGATAAACAGACCAAGCGGCCC
GCGTCGCAGCTCCAGGGAAATCTGCAAGGACATGCGACGGACGTGTGCGT
TGGCCCGCACCACCAGACCAATCTCGCCAAGAAGATCTTCCTCAGTGACC
AGTACTGTATCGTCCACTAGTCGCCGCTCCAGCGCAGAAGTGCAGTCCGA
GGTGGTGACCACTAGGATACCAGAGGATAGAAGAGCCAACAAGCCTACAC
CACCGCCACGAAGACCAGCGGAATTAGTGTTTGATGAGGACGACTCGGAC
GATGATTTCGACGAAGCAGTAAGCCCCGTGGAGGAGACACAGACTGAGCA
AAATGAAGAGAACAATCGTCTGTTTAGCATTATAGAGGAAAATGGCAGTG
AAGGGGAGTCCACAGACTCGTCATCATCATGCGAGGCCATCTATTGCGAC
ACAACGTTTGAAAGTAGTCCGCCAAACGCCCAAGTCACCGTCACGCCCAG
TGGACGGGCTCTGCGGGAAGTGGACACCAATATCCCTGTAGCAGTGTCCC
TCAGTCGGGGAAAAGAGACTGGGAAGGGATCATGGTTGGCTATTTCCGTA
GCTGT

BS08533.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:08:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG5303-PA 1206 mei-S332-RA 1..839 17..855 4195 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:27:01
Subject Length Description Subject Range Query Range Score Percent Strand
mei-S332-RB 1594 CG5303-RB 87..925 17..855 4195 100 Plus
mei-S332-RA 1504 CG5303-RA 196..1034 17..855 4195 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:26:56
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22122998..22123474 17..493 2385 100 Plus
2R 25286936 2R 22123534..22123897 492..855 1820 100 Plus
Blast to na_te.dros performed on 2015-02-12 05:26:58 has no hits.

BS08533.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:43:14 Download gff for BS08533.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5303-PA 1..839 17..855 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:43:29 Download gff for BS08533.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5303-PA 1..839 17..855 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:56:45 Download gff for BS08533.5prime
Subject Subject Range Query Range Percent Splice Strand
mei-S332-RA 191..1034 10..855 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:27:00 Download gff for BS08533.5prime
Subject Subject Range Query Range Percent Splice Strand
mei-S332-RA 191..1034 10..855 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:27:00 Download gff for BS08533.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 22122993..22123474 10..493 99 -> Plus
2R 22123536..22123897 494..855 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:56:45 Download gff for BS08533.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18010498..18010979 10..493 99 -> Plus
arm_2R 18011041..18011402 494..855 100   Plus

BS08533.complete Sequence

1238 bp (1238 high quality bases) assembled on 2006-01-18

GenBank Submission: FJ636193

> BS08533.complete
GAAGTTATCAGTCGACATGGGATCCAAAGTGGAGCAGCAGTACAAGCTGC
TGAATGCGGAGCTAATGGACCAAGTGCAGAAGCAGCGCTTGGAGATCGGC
GAGTACAGGAAGCGGGTGATATCTTTGGAGCGAGAGATCATGGACATTCG
GGAGGAGCACGTCCTGCAAAACCATCGCCAGCGCATGGAGAACATCAGTA
TCGTACGCAGCCTGATGCTGAGCCTGAACGTGGACTCCGATTCCCTGGCA
GTGCGTCAGGAGCCCGCTCCCGCAGCTCAGATAAACAGACCAAGCGGCCC
GCGTCGCAGCTCCAGGGAAATCTGCAAGGACATGCGACGGACGTGTGCGT
TGGCCCGCACCACCAGACCAATCTCGCCAAGAAGATCTTCCTCAGTGACC
AGTACTGTATCGTCCACTAGTCGCCGCTCCAGCGCAGAAGTGCAGTCCGA
GGTGGTGACCACTAGGATACCAGAGGATAGAAGAGCCAACAAGCCTACAC
CACCGCCACGAAGACCAGCGGAATTAGTGTTTGATGAGGACGACTCGGAC
GATGATTTCGACGAAGCAGTAAGCCCCGTGGAGGAGACACAGACTGAGCA
AAATGAAGAGAACAATCGTCTGTTTAGCATTATAGAGGAAAATGGCAGTG
AAGGGGAGTCCACAGACTCGTCATCATCATGCGAGGCCATCTATTGCGAC
ACAACGTTTGAAAGTAGTCCGCCAAACGCCCAAGTCACCGTCACGCCCAG
TGGACGGGCTCTGCGGGAAGTGGACACCAATATCCCTGTAGCAGTGTCCC
TCAGTCGGGGAAAAGAGACTGGGAAGGGATCATGGTTGGCTATTTCCGTA
GCTGTGGAAGATTCTCCACAGGAGCCAAGCATACAGTGCCCACGACTGGC
AGTCACCAGGCCTAGTCAATCGTCTGGAATATTTCCTGATGTCAACGGAT
TAACGCCGCGAAGAAGCCTGTTCAATGGGATAGGCAAAATGGCCGGAAGC
ACCAGCACTCCGAAATCCTTTCTCGTCGAGGAAATGCCATCTATAAGAAC
TAGAAGCCGAACTGCGGCTAATAAGAAATCAGAAAATACGGATATGTCTA
GTTCTTTCTGCAACAACAGCGCAAGGCCGAGTAGAAGCTGCAGGCCCACC
AGTTTGGTGGAGCCAAGTCTGAAGAACAAGTTGCGCAATGGCTCGAAAGG
CAAGGCCAAGGCCAAAAAGTAGAAGCTTTCTAGACCAT

BS08533.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:00:07
Subject Length Description Subject Range Query Range Score Percent Strand
mei-S332-RB 1206 CG5303-PB 1..1206 17..1222 6030 100 Plus
mei-S332-RA 1206 CG5303-PA 1..1206 17..1222 6030 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:00:08
Subject Length Description Subject Range Query Range Score Percent Strand
mei-S332-RB 1594 CG5303-RB 87..1293 17..1223 6035 100 Plus
mei-S332-RA 1504 CG5303-RA 196..1402 17..1223 6035 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:00:05
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22123534..22124265 492..1223 3660 100 Plus
2R 25286936 2R 22122998..22123474 17..493 2385 100 Plus
Blast to na_te.dros performed on 2014-11-28 01:00:06 has no hits.

BS08533.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:02:56 Download gff for BS08533.complete
Subject Subject Range Query Range Percent Splice Strand
mei-S332-RA 1..1206 17..1222 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:40:48 Download gff for BS08533.complete
Subject Subject Range Query Range Percent Splice Strand
mei-S332-RA 191..1402 10..1223 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:04:17 Download gff for BS08533.complete
Subject Subject Range Query Range Percent Splice Strand
mei-S332-RA 196..1401 17..1222 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:02:56 Download gff for BS08533.complete
Subject Subject Range Query Range Percent Splice Strand
mei-S332-RA 191..1402 10..1223 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:30:45 Download gff for BS08533.complete
Subject Subject Range Query Range Percent Splice Strand
mei-S332-RA 196..1401 17..1222 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:30:45 Download gff for BS08533.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22122998..22123474 17..493 100 -> Plus
2R 22123536..22124264 494..1222 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:04:17 Download gff for BS08533.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18010503..18010979 17..493 100 -> Plus
arm_2R 18011041..18011769 494..1222 100   Plus

BS08533.pep Sequence

Translation from 16 to 1221

> BS08533.pep
MGSKVEQQYKLLNAELMDQVQKQRLEIGEYRKRVISLEREIMDIREEHVL
QNHRQRMENISIVRSLMLSLNVDSDSLAVRQEPAPAAQINRPSGPRRSSR
EICKDMRRTCALARTTRPISPRRSSSVTSTVSSTSRRSSAEVQSEVVTTR
IPEDRRANKPTPPPRRPAELVFDEDDSDDDFDEAVSPVEETQTEQNEENN
RLFSIIEENGSEGESTDSSSSCEAIYCDTTFESSPPNAQVTVTPSGRALR
EVDTNIPVAVSLSRGKETGKGSWLAISVAVEDSPQEPSIQCPRLAVTRPS
QSSGIFPDVNGLTPRRSLFNGIGKMAGSTSTPKSFLVEEMPSIRTRSRTA
ANKKSENTDMSSSFCNNSARPSRSCRPTSLVEPSLKNKLRNGSKGKAKAK
K*

BS08533.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:22:08
Subject Length Description Subject Range Query Range Score Percent Strand
mei-S332-PB 401 CG5303-PB 1..401 1..401 2020 100 Plus
mei-S332-PA 401 CG5303-PA 1..401 1..401 2020 100 Plus