Clone Sequence Records
BS08533.3prime Sequence
915 bp (821 high quality bases) assembled on 2006-01-10
> BS08533.3prime
ATGGTCTAGAAAGCTTCTACTTTTTGGCCTTGGCCTTGCCTTTCGAGCCA
TTGCGCAACTTGTTCTTCAGACTTGGCTCCACCAAACTGGTGGGCCTGCA
GCTTCTACTCGGCCTTGCGCTGTTGTTGCAGAAAGAACTAGACATATCCG
TATTTTCTGATTTCTTATTAGCCGCAGTTCGGCTTCTAGTTCTTATAGAT
GGCATTTCCTCGACGAGAAAGGATTTCGGAGTGCTGGTGCTTCCGGCCAT
TTTGCCTATCCCATTGAACAGGCTTCTTCGCGGCGTTAATCCGTTGACAT
CAGGAAATATTCCAGACGATTGACTAGGCCTGGTGACTGCCAGTCGTGGG
CACTGTATGCTTGGCTCCTGTGGAGAATCTTCCACAGCTACGGAAATAGC
CAACCATGATCCCTTCCCAGTCTCTTTTCCCCGACTGAGGGACACTGCTA
CAGGGATATTGGTGTCCACTTCCCGCAGAGCCCGTCCACTGGGCGTGACG
GTGACTTGGGCGTTTGGCGGACTACTTTCAAACGTTGTGTCGCAATAGAT
GGCCTCGCATGATGATGACGAGTCTGTGGACTCCCCTTCACTGCCATTTT
CCTCTATAATGCTAAACAGACGATTGTTCTCTTCATTTTGCTCAGTCTGT
GTCTCCTCCACGGGGCTTACTGCTTCGTCGAAATCATCGTCCGAGTCGTC
CTCATCAAACACTAATTCCGCTGGTCTTCGTGGCGGTGGTGTAGGCTTGT
TGGCTCTTCTATCCTCTGGTATCCTAGTGGTCACCACCTCGGACTGCACT
TCTGCGCTGGAGCGGCGACTAGTGGACGATACAGTACTGGTCACTGAGGA
AGATCTTCTTGGCGAGATTGGTCTGGTGGTGCGGGCCAACGCACACGTCC
GTCGCATGTCCTTGC
BS08533.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:08:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5303-PA | 1206 | mei-S332-RA | 308..1206 | 915..17 | 4495 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 14:27:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mei-S332-RB | 1594 | CG5303-RB | 394..1293 | 915..16 | 4500 | 100 | Minus |
mei-S332-RA | 1504 | CG5303-RA | 503..1402 | 915..16 | 4500 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 14:27:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22123534..22124265 | 747..16 | 3660 | 100 | Minus |
2R | 25286936 | 2R | 22123305..22123474 | 915..746 | 850 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-08 14:27:08 has no hits.
BS08533.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:43:12 Download gff for
BS08533.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5303-PA | 308..1206 | 17..915 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:43:28 Download gff for
BS08533.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5303-PA | 308..1206 | 17..915 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:56:05 Download gff for
BS08533.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mei-S332-RA | 503..1402 | 16..915 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:36:39 Download gff for
BS08533.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mei-S332-RA | 503..1402 | 16..915 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:36:39 Download gff for
BS08533.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22123305..22123474 | 746..915 | 100 | -> | Minus |
2R | 22123536..22124265 | 16..745 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:56:05 Download gff for
BS08533.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18010810..18010979 | 746..915 | 100 | -> | Minus |
arm_2R | 18011041..18011770 | 16..745 | 100 | | Minus |
BS08533.5prime Sequence
855 bp (775 high quality bases) assembled on 2006-01-10
> BS08533.5prime
GAAGTTATCAGTCGACATGGGATCCAAAGTGGAGCAGCAGTACAAGCTGC
TGAATGCGGAGCTAATGGACCAAGTGCAGAAGCAGCGCTTGGAGATCGGC
GAGTACAGGAAGCGGGTGATATCTTTGGAGCGAGAGATCATGGACATTCG
GGAGGAGCACGTCCTGCAAAACCATCGCCAGCGCATGGAGAACATCAGTA
TCGTACGCAGCCTGATGCTGAGCCTGAACGTGGACTCCGATTCCCTGGCA
GTGCGTCAGGAGCCCGCTCCCGCAGCTCAGATAAACAGACCAAGCGGCCC
GCGTCGCAGCTCCAGGGAAATCTGCAAGGACATGCGACGGACGTGTGCGT
TGGCCCGCACCACCAGACCAATCTCGCCAAGAAGATCTTCCTCAGTGACC
AGTACTGTATCGTCCACTAGTCGCCGCTCCAGCGCAGAAGTGCAGTCCGA
GGTGGTGACCACTAGGATACCAGAGGATAGAAGAGCCAACAAGCCTACAC
CACCGCCACGAAGACCAGCGGAATTAGTGTTTGATGAGGACGACTCGGAC
GATGATTTCGACGAAGCAGTAAGCCCCGTGGAGGAGACACAGACTGAGCA
AAATGAAGAGAACAATCGTCTGTTTAGCATTATAGAGGAAAATGGCAGTG
AAGGGGAGTCCACAGACTCGTCATCATCATGCGAGGCCATCTATTGCGAC
ACAACGTTTGAAAGTAGTCCGCCAAACGCCCAAGTCACCGTCACGCCCAG
TGGACGGGCTCTGCGGGAAGTGGACACCAATATCCCTGTAGCAGTGTCCC
TCAGTCGGGGAAAAGAGACTGGGAAGGGATCATGGTTGGCTATTTCCGTA
GCTGT
BS08533.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:08:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5303-PA | 1206 | mei-S332-RA | 1..839 | 17..855 | 4195 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:27:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mei-S332-RB | 1594 | CG5303-RB | 87..925 | 17..855 | 4195 | 100 | Plus |
mei-S332-RA | 1504 | CG5303-RA | 196..1034 | 17..855 | 4195 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:26:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22122998..22123474 | 17..493 | 2385 | 100 | Plus |
2R | 25286936 | 2R | 22123534..22123897 | 492..855 | 1820 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 05:26:58 has no hits.
BS08533.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:43:14 Download gff for
BS08533.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5303-PA | 1..839 | 17..855 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:43:29 Download gff for
BS08533.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5303-PA | 1..839 | 17..855 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:56:45 Download gff for
BS08533.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mei-S332-RA | 191..1034 | 10..855 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:27:00 Download gff for
BS08533.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mei-S332-RA | 191..1034 | 10..855 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:27:00 Download gff for
BS08533.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22122993..22123474 | 10..493 | 99 | -> | Plus |
2R | 22123536..22123897 | 494..855 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:56:45 Download gff for
BS08533.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18010498..18010979 | 10..493 | 99 | -> | Plus |
arm_2R | 18011041..18011402 | 494..855 | 100 | | Plus |
BS08533.complete Sequence
1238 bp (1238 high quality bases) assembled on 2006-01-18
GenBank Submission: FJ636193
> BS08533.complete
GAAGTTATCAGTCGACATGGGATCCAAAGTGGAGCAGCAGTACAAGCTGC
TGAATGCGGAGCTAATGGACCAAGTGCAGAAGCAGCGCTTGGAGATCGGC
GAGTACAGGAAGCGGGTGATATCTTTGGAGCGAGAGATCATGGACATTCG
GGAGGAGCACGTCCTGCAAAACCATCGCCAGCGCATGGAGAACATCAGTA
TCGTACGCAGCCTGATGCTGAGCCTGAACGTGGACTCCGATTCCCTGGCA
GTGCGTCAGGAGCCCGCTCCCGCAGCTCAGATAAACAGACCAAGCGGCCC
GCGTCGCAGCTCCAGGGAAATCTGCAAGGACATGCGACGGACGTGTGCGT
TGGCCCGCACCACCAGACCAATCTCGCCAAGAAGATCTTCCTCAGTGACC
AGTACTGTATCGTCCACTAGTCGCCGCTCCAGCGCAGAAGTGCAGTCCGA
GGTGGTGACCACTAGGATACCAGAGGATAGAAGAGCCAACAAGCCTACAC
CACCGCCACGAAGACCAGCGGAATTAGTGTTTGATGAGGACGACTCGGAC
GATGATTTCGACGAAGCAGTAAGCCCCGTGGAGGAGACACAGACTGAGCA
AAATGAAGAGAACAATCGTCTGTTTAGCATTATAGAGGAAAATGGCAGTG
AAGGGGAGTCCACAGACTCGTCATCATCATGCGAGGCCATCTATTGCGAC
ACAACGTTTGAAAGTAGTCCGCCAAACGCCCAAGTCACCGTCACGCCCAG
TGGACGGGCTCTGCGGGAAGTGGACACCAATATCCCTGTAGCAGTGTCCC
TCAGTCGGGGAAAAGAGACTGGGAAGGGATCATGGTTGGCTATTTCCGTA
GCTGTGGAAGATTCTCCACAGGAGCCAAGCATACAGTGCCCACGACTGGC
AGTCACCAGGCCTAGTCAATCGTCTGGAATATTTCCTGATGTCAACGGAT
TAACGCCGCGAAGAAGCCTGTTCAATGGGATAGGCAAAATGGCCGGAAGC
ACCAGCACTCCGAAATCCTTTCTCGTCGAGGAAATGCCATCTATAAGAAC
TAGAAGCCGAACTGCGGCTAATAAGAAATCAGAAAATACGGATATGTCTA
GTTCTTTCTGCAACAACAGCGCAAGGCCGAGTAGAAGCTGCAGGCCCACC
AGTTTGGTGGAGCCAAGTCTGAAGAACAAGTTGCGCAATGGCTCGAAAGG
CAAGGCCAAGGCCAAAAAGTAGAAGCTTTCTAGACCAT
BS08533.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:00:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mei-S332-RB | 1206 | CG5303-PB | 1..1206 | 17..1222 | 6030 | 100 | Plus |
mei-S332-RA | 1206 | CG5303-PA | 1..1206 | 17..1222 | 6030 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:00:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mei-S332-RB | 1594 | CG5303-RB | 87..1293 | 17..1223 | 6035 | 100 | Plus |
mei-S332-RA | 1504 | CG5303-RA | 196..1402 | 17..1223 | 6035 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:00:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22123534..22124265 | 492..1223 | 3660 | 100 | Plus |
2R | 25286936 | 2R | 22122998..22123474 | 17..493 | 2385 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:00:06 has no hits.
BS08533.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:02:56 Download gff for
BS08533.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mei-S332-RA | 1..1206 | 17..1222 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:40:48 Download gff for
BS08533.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mei-S332-RA | 191..1402 | 10..1223 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:04:17 Download gff for
BS08533.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mei-S332-RA | 196..1401 | 17..1222 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:02:56 Download gff for
BS08533.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mei-S332-RA | 191..1402 | 10..1223 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:30:45 Download gff for
BS08533.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mei-S332-RA | 196..1401 | 17..1222 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:30:45 Download gff for
BS08533.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22122998..22123474 | 17..493 | 100 | -> | Plus |
2R | 22123536..22124264 | 494..1222 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:04:17 Download gff for
BS08533.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18010503..18010979 | 17..493 | 100 | -> | Plus |
arm_2R | 18011041..18011769 | 494..1222 | 100 | | Plus |
BS08533.pep Sequence
Translation from 16 to 1221
> BS08533.pep
MGSKVEQQYKLLNAELMDQVQKQRLEIGEYRKRVISLEREIMDIREEHVL
QNHRQRMENISIVRSLMLSLNVDSDSLAVRQEPAPAAQINRPSGPRRSSR
EICKDMRRTCALARTTRPISPRRSSSVTSTVSSTSRRSSAEVQSEVVTTR
IPEDRRANKPTPPPRRPAELVFDEDDSDDDFDEAVSPVEETQTEQNEENN
RLFSIIEENGSEGESTDSSSSCEAIYCDTTFESSPPNAQVTVTPSGRALR
EVDTNIPVAVSLSRGKETGKGSWLAISVAVEDSPQEPSIQCPRLAVTRPS
QSSGIFPDVNGLTPRRSLFNGIGKMAGSTSTPKSFLVEEMPSIRTRSRTA
ANKKSENTDMSSSFCNNSARPSRSCRPTSLVEPSLKNKLRNGSKGKAKAK
K*
BS08533.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:22:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mei-S332-PB | 401 | CG5303-PB | 1..401 | 1..401 | 2020 | 100 | Plus |
mei-S332-PA | 401 | CG5303-PA | 1..401 | 1..401 | 2020 | 100 | Plus |