Clone BS08540 Report

Search the DGRC for BS08540

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:85
Well:40
Vector:pDNR-Dual
Associated Gene/TranscriptLac-RA
Protein status:BS08540.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08540.3prime Sequence

912 bp (835 high quality bases) assembled on 2006-01-10

> BS08540.3prime
ATGGTCTAGAAAGCTTTTATCTGGCGAAGAGCAACGCCGCCAGGATGCCC
ACAAGAGCGAACGAAGTGGCGGACACATCCTCGGCTCCGGCGATGTACGC
CTGTCCACAGGCCGGTGGGCACACGGGAATGATCGTCTCGAAGAGATTGA
CGCGCGCCTCCGCCTCTCCAAAGCGATTGGTGGCCTTGCACACATAATCT
CCGTACTGGCGCTTCTCAACGGTGATCACACGGAGCGTCGAGTCGGTATA
CTCGTCGGCGGTGGCGAAGTGCGAGATGCTGTAGTGCTGGTTGTTGGCCA
GCTGGATGTCGTCCTTGGTCCACACAATGGCCGGTGGCGGATAGGCCTCA
ATGTGGCACTCCAAGTCCATGTCGTACTGCAGAGCCTGTCCCAAACGAGG
ACGCGGCACGGTGATCACTGGTGCGAACTCCACCTCCACGTTGATATTGC
GCCTGTCGCCCTTGCTCACTCCATTGTCGGCCACGCAGTAGTAGGTGCCG
CGATCCTCCTTCTTCACTGACTTGATGCGCAGGGTGTTGCCCACATAGGT
GGCACTATCAGTTGGCAGAATGGCATTGTTCTCGCGCCTCCAGGTGATGG
TGGGTGTGGGATAGCCGCTGGCGTAGCACTCCATCTGGACCTCGCTGCCC
TCGCTGGCCACCACCGACTGCGTGGAGTTGTCCGAGATGACGGGGGGACG
GCGCACCGATAGCTTCACTTCGGCGCTCACTTTGTGAACGGTGGAGATCA
CCACCTGGCAGGTGTAGGTGCCCGCGTCCGTCTCCTGAATGTCCTTGATC
TGCAGCTTGTAGGTGGACGAGTTGGGATCGTACCGCAGCGAGAAGCGCGA
ATCCTTGATGACCAGCGTGGAGCCCGTGGAGAGGAAGACGGGATCGCTGT
CCGTCTTCAGGA

BS08540.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:08:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG12369-PA 1080 Lac-RA 185..1080 912..17 4480 100 Minus
CG12369-PB 759 Lac-RB 341..759 435..17 2095 100 Minus
CG12369-PB 759 Lac-RB 185..346 912..751 810 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 07:17:43
Subject Length Description Subject Range Query Range Score Percent Strand
Lac-RA 2156 CG12369-RA 512..1407 912..17 4480 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 07:17:37
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12464339..12464881 559..17 2715 100 Minus
2R 25286936 2R 12453701..12454054 912..559 1770 100 Minus
Blast to na_te.dros performed on 2015-02-01 07:17:40 has no hits.

BS08540.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:43:25 Download gff for BS08540.3prime
Subject Subject Range Query Range Percent Splice Strand
Lac-PA 186..1080 17..911 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:43:47 Download gff for BS08540.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12369-PA 186..1080 17..911 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:12:57 Download gff for BS08540.3prime
Subject Subject Range Query Range Percent Splice Strand
Lac-RA 513..1409 13..911 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:42:39 Download gff for BS08540.3prime
Subject Subject Range Query Range Percent Splice Strand
Lac-RA 513..1409 13..911 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:42:39 Download gff for BS08540.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 12453702..12454054 559..911 100 -> Minus
2R 12464340..12464883 13..558 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:12:57 Download gff for BS08540.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8341207..8341559 559..911 100 -> Minus
arm_2R 8351845..8352388 13..558 99   Minus

BS08540.5prime Sequence

855 bp (790 high quality bases) assembled on 2006-01-10

> BS08540.5prime
GAAGTTATCAGTCGACATGTGGCGGCCGAGTATCTCGAATTGCGTGTGGA
GCACCCTGCTCCTGGCCATTTTTGTGCAGCAAACGCTAGCACAGCGAACC
CCGACCATATCCTACATCACGCAGGAGCAGATCAAGGATATCGGCGGCAC
AGTGGAGTTCGATTGCTCCGTCCAGTATGCCAAAGAGTACAACGTGCTGT
TCCTGAAGACGGACAGCGATCCCGTCTTCCTCTCCACGGGCTCCACGCTG
GTCATCAAGGATTCGCGCTTCTCGCTGCGGTACGATCCCAACTCGTCCAC
CTACAAGCTGCAGATCAAGGACATTCAGGAGACGGACGCGGGCACCTACA
CCTGCCAGGTGGTGATCTCCACCGTTCACAAAGTGAGCGCCGAAGTGAAG
CTATCGGTGCGCCGTCCCCCCGTCATCTCGGACAACTCCACGCAGTCGGT
GGTGGCCAGCGAGGGCAGCGAGGTCCAGATGGAGTGCTACGCCAGCGGCT
ATCCCACACCCACCATCACCTGGAGGCGCGAGAACAATGCCATTCTGCCA
ACTGATAGTGCCACCTATGTGGGCAACACCCTGCGCATCAAGTCAGTGAA
GAAGGAGGATCGCGGCACCTACTACTGCGTGGCCGACAATGGAGTGAGCA
AGGGCGACAGGCGCAATATCAACGTGGAGGTGGAGTTCGCACCAGTGATC
ACCGTGCCGCGTCCTCGTTTGGGACAGGCTCTGCAGTACGACATGGACTT
GGAGTGCCACATTGAGGCCTATCCGCCACCGGCCATTGTGTGGAACAAGG
ACGACATCCAGCTGGCCAACAACCAGCACTACAGCATCTCGCACTTCGCC
ACCGC

BS08540.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:08:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG12369-PA 1080 Lac-RA 1..839 17..855 4170 99.8 Plus
CG12369-PB 759 Lac-RB 1..346 17..362 1730 100 Plus
CG12369-PB 759 Lac-RB 341..518 678..855 865 99.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:50:56
Subject Length Description Subject Range Query Range Score Percent Strand
Lac-RA 2156 CG12369-RA 328..1166 17..855 4180 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 09:50:48
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12453517..12454054 17..554 2690 100 Plus
2R 25286936 2R 12464339..12464640 554..855 1495 99.7 Plus
Blast to na_te.dros performed on 2015-02-02 09:50:52 has no hits.

BS08540.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:43:26 Download gff for BS08540.5prime
Subject Subject Range Query Range Percent Splice Strand
Lac-PA 1..839 17..855 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:43:48 Download gff for BS08540.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12369-PA 1..839 17..855 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:25:21 Download gff for BS08540.5prime
Subject Subject Range Query Range Percent Splice Strand
Lac-RA 328..1166 17..855 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:34:24 Download gff for BS08540.5prime
Subject Subject Range Query Range Percent Splice Strand
Lac-RA 328..1166 17..855 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:34:24 Download gff for BS08540.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 12453517..12454054 17..554 100 -> Plus
2R 12464340..12464640 555..855 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:25:21 Download gff for BS08540.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8341022..8341559 17..554 100 -> Plus
arm_2R 8351845..8352145 555..855 99   Plus

BS08540.complete Sequence

1112 bp (1112 high quality bases) assembled on 2006-01-18

> BS08540.complete
GAAGTTATCAGTCGACATGTGGCGGCCGAGTATCTCGAATTGCGTGTGGA
GCACCCTGCTCCTGGCCATTTTTGTGCAGCAAACGCTAGCACAGCGAACC
CCGACCATATCCTACATCACGCAGGAGCAGATCAAGGATATCGGCGGCAC
AGTGGAGTTCGATTGCTCCGTCCAGTATGCCAAAGAGTACAACGTGCTGT
TCCTGAAGACGGACAGCGATCCCGTCTTCCTCTCCACGGGCTCCACGCTG
GTCATCAAGGATTCGCGCTTCTCGCTGCGGTACGATCCCAACTCGTCCAC
CTACAAGCTGCAGATCAAGGACATTCAGGAGACGGACGCGGGCACCTACA
CCTGCCAGGTGGTGATCTCCACCGTTCACAAAGTGAGCGCCGAAGTGAAG
CTATCGGTGCGCCGTCCCCCCGTCATCTCGGACAACTCCACGCAGTCGGT
GGTGGCCAGCGAGGGCAGCGAGGTCCAGATGGAGTGCTACGCCAGCGGCT
ATCCCACACCCACCATCACCTGGAGGCGCGAGAACAATGCCATTCTGCCA
ACTGATAGTGCCACCTATGTGGGCAACACCCTGCGCATCAAGTCAGTGAA
GAAGGAGGATCGCGGCACCTACTACTGCGTGGCCGACAATGGAGTGAGCA
AGGGCGACAGGCGCAATATCAACGTGGAGGTGGAGTTCGCACCAGTGATC
ACCGTGCCGCGTCCTCGTTTGGGACAGGCTCTGCAGTACGACATGGACTT
GGAGTGCCACATTGAGGCCTATCCGCCACCGGCCATTGTGTGGACCAAGG
ACGACATCCAGCTGGCCAACAACCAGCACTACAGCATCTCGCACTTCGCC
ACCGCCGACGAGTATACCGACTCGACGCTCCGTGTGATCACCGTTGAGAA
GCGCCAGTACGGAGATTATGTGTGCAAGGCCACCAATCGCTTTGGAGAGG
CGGAGGCGCGCGTCAATCTCTTCGAGACGATCATTCCCGTGTGCCCACCG
GCCTGTGGACAGGCGTACATCGCCGGAGCCGAGGATGTGTCCGCCACTTC
GTTCGCTCTTGTGGGCATCCTGGCGGCGTTGCTCTTCGCCAGATAAAAGC
TTTCTAGACCAT

BS08540.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:54:57
Subject Length Description Subject Range Query Range Score Percent Strand
Lac-RA 1080 CG12369-PA 1..1080 17..1096 5400 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:54:58
Subject Length Description Subject Range Query Range Score Percent Strand
Lac-RA 2156 CG12369-RA 328..1407 17..1096 5400 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:54:55
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12464339..12464881 554..1096 2715 100 Plus
2R 25286936 2R 12453517..12454054 17..554 2690 100 Plus
Blast to na_te.dros performed on 2014-11-28 04:54:56 has no hits.

BS08540.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:02:57 Download gff for BS08540.complete
Subject Subject Range Query Range Percent Splice Strand
Lac-RA 1..1080 17..1096 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:32:43 Download gff for BS08540.complete
Subject Subject Range Query Range Percent Splice Strand
Lac-RA 327..1404 17..1094 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:09:55 Download gff for BS08540.complete
Subject Subject Range Query Range Percent Splice Strand
Lac-RA 328..1405 17..1094 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:02:57 Download gff for BS08540.complete
Subject Subject Range Query Range Percent Splice Strand
Lac-RA 327..1408 17..1100 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:00:14 Download gff for BS08540.complete
Subject Subject Range Query Range Percent Splice Strand
Lac-RA 328..1405 17..1094 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:00:14 Download gff for BS08540.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12453517..12454054 17..554 100 -> Plus
2R 12464340..12464879 555..1094 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:09:55 Download gff for BS08540.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8341022..8341559 17..554 100 -> Plus
arm_2R 8351845..8352384 555..1094 100   Plus

BS08540.pep Sequence

Translation from 16 to 1095

> BS08540.pep
MWRPSISNCVWSTLLLAIFVQQTLAQRTPTISYITQEQIKDIGGTVEFDC
SVQYAKEYNVLFLKTDSDPVFLSTGSTLVIKDSRFSLRYDPNSSTYKLQI
KDIQETDAGTYTCQVVISTVHKVSAEVKLSVRRPPVISDNSTQSVVASEG
SEVQMECYASGYPTPTITWRRENNAILPTDSATYVGNTLRIKSVKKEDRG
TYYCVADNGVSKGDRRNINVEVEFAPVITVPRPRLGQALQYDMDLECHIE
AYPPPAIVWTKDDIQLANNQHYSISHFATADEYTDSTLRVITVEKRQYGD
YVCKATNRFGEAEARVNLFETIIPVCPPACGQAYIAGAEDVSATSFALVG
ILAALLFAR*

BS08540.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:08:37
Subject Length Description Subject Range Query Range Score Percent Strand
Lac-PA 359 CG12369-PA 1..359 1..359 1862 100 Plus
Ama-PC 333 CG2198-PC 14..329 16..325 656 38.1 Plus
Ama-PA 333 CG2198-PA 14..329 16..325 656 38.1 Plus
Ama-PB 341 CG2198-PB 22..337 16..325 656 38.1 Plus
CG32791-PC 554 CG32791-PC 27..339 14..320 365 29 Plus