Clone BS08545 Report

Search the DGRC for BS08545

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:85
Well:45
Vector:pDNR-Dual
Associated Gene/TranscriptArp10-RA
Protein status:BS08545.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08545.3prime Sequence

887 bp (867 high quality bases) assembled on 2006-01-10

> BS08545.3prime
ATGGTCTAGAAAGCTTCTACGAGCCTGTCGGCCTATTATCGCACAGGTTG
CTCCAGTCGGGAACGTGCTCGCTCTTTAGATACGTCTCCTTGACCAGCGA
TCGTGTCTGGATGAGATCCGTCGCGCCGCACAAGGCGCCGCCCAGCCAGG
CAGTAAAGTTTTGCTTGCCGACAGCATTGAAAAACTTGAACTGCAGCTCG
CCATGGAAGCGTTCGGCGTAGAACGGATCCTCGGTGAGCAGATGCTGCAG
CTCCTGGCGGAGGCGGGCCAGCAGACCCTGGACCATTGAGCCGCCGCCCA
CGAGGAACACACTCTCGACCAGGGCACGTCGCACGTCTAGTGTGCAGTCG
AGAATGGAGCGCAGGATGAGATGCGGCAGGCTGTCCCGCTCGTTGCTGGC
CTCGAACATGATCTCGTAGGCAGACTCCCGCAGGAGGCCGGGCACCTGGA
TGACCGCATCGTTGTCGCTGACAATGTAGTCCACGTCTGGCGCGGGAGTC
GGCTGATTCTCGTCGCCGTTGGCGCGGGCCTTGGCTCTTTCCATGGTGGT
CACAAAGCAGGTTCGCACCTTGATGTCCTCCAGCACGCTTTCTGTTAGCA
GGCTCTCCTTAACGCCACTCTCAACCAGCTGCCGCTTGATCTCCGCGTGG
ATGGCGCTGCCTCCGTAGCTCTGATCCTTGAAGGCGGCCATGATTTGCAC
CCCGCTGAAGACGGGCATAACGCTGGTCTCGCTGTAGCCAACGTCCACCA
CAAGGGCAGTGGGCACTGCCAGCGTAGACAGCGCAATGAGATGCACGGGC
ACGAACAGCACGGAGGAGACGTCGAAGTGGACAAAGAGCACGCGGGCCAA
GGTTTCACGCAGCACAGTGGATCCGAACACGTTCTCC

BS08545.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:09:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG12235-PA 1137 Arp11-RA 267..1137 887..17 4355 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 14:26:36
Subject Length Description Subject Range Query Range Score Percent Strand
Arp10-RB 1536 CG12235-RB 527..1398 887..16 4360 100 Minus
Arp10-RA 1374 CG12235-RA 365..1236 887..16 4360 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 14:26:30
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19644669..19645540 16..887 4360 100 Plus
Blast to na_te.dros performed on 2015-02-08 14:26:33 has no hits.

BS08545.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:43:29 Download gff for BS08545.3prime
Subject Subject Range Query Range Percent Splice Strand
Arp11-PA 267..1137 17..887 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:43:51 Download gff for BS08545.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12235-PA 267..1137 17..887 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:56:00 Download gff for BS08545.3prime
Subject Subject Range Query Range Percent Splice Strand
Arp10-RA 365..1238 12..887 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:36:33 Download gff for BS08545.3prime
Subject Subject Range Query Range Percent Splice Strand
Arp10-RA 365..1238 12..887 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:36:33 Download gff for BS08545.3prime
Subject Subject Range Query Range Percent Splice Strand
X 19644667..19645540 12..887 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:56:00 Download gff for BS08545.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 19538700..19539573 12..887 99   Plus

BS08545.5prime Sequence

907 bp (846 high quality bases) assembled on 2006-01-10

> BS08545.5prime
GAAGTTATCAGTCGACATGCCCATTTACGAGAGCGTGATGCAGGAGAAGC
CGCCCATTGTCCTCGACATTGGCACCGCCTACACCAAGCTGGGATTCGCA
GCGGAGGCGTATCCGCGCAAGATCATGCCCACGGAGGTGGTGATGACCAC
GACGGGGATCCGGAAGCGTCTGTTCGACTACGACACTCCGGAGGAGCTGT
ACGACCAGCTAGTGGATTTTCTGCAGACGATCTTCTTCAAGCATCTACTG
GTCAGCCCCAAGGAGCGCAAGTTCGTGCTGGTGGAGAACGTGTTCGGATC
CACTGTGCTGCGTGAAACCTTGGCCCGCGTGCTCTTTGTCCACTTCGACG
TCTCCTCCGTGCTGTTCGTGCCCGTGCATCTCATTGCGCTGTCTACGCTG
GCAGTGCCCACTGCCCTTGTGGTGGACGTTGGCTACAGCGAGACCAGCGT
TATGCCCGTCTTCAGCGGGGTGCAAATCATGGCCGCCTTCAAGGATCAGA
GCTACGGAGGCAGCGCCATCCACGCGGAGATCAAGCGGCAGCTGGTTGAG
AGTGGCGTTAAGGAGAGCCTGCTAACAGAAAGCGTGCTGGAGGACATCAA
GGTGCGAACCTGCTTTGTGACCACCATGGAAAGAGCCAAGGCCCGCGCCA
ACGGCGACGAGAATCAGCCGACTCCCGCGCCAGACGTGGACTACATTGTC
AGCGACAACGATGCGGTCATCCAGGTGCCCGGCCTCCTGCGGGAGTCTGC
CTACGAGATCATGTTCGAGGCCAGCAACGAGCGGGACAGCCTGCCGCATC
TCATCCTGCGCTCCATTCTCGACTGCACACTAGACGTGCGACGTGCCCTG
GTCGAGAGTGTGTTCCTCGTGGGCGGCGGCTCAATGGTCCAGGGTCTGCT
GGCCCGC

BS08545.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:09:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG12235-PA 1137 Arp11-RA 1..891 17..907 4455 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 10:01:42
Subject Length Description Subject Range Query Range Score Percent Strand
Arp10-RB 1536 CG12235-RB 261..1151 17..907 4455 100 Plus
Arp10-RA 1374 CG12235-RA 99..989 17..907 4455 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 10:01:36
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19644916..19645582 907..241 3335 100 Minus
X 23542271 X 19645632..19645785 241..88 770 100 Minus
X 23542271 X 19645845..19645916 88..17 360 100 Minus
Blast to na_te.dros performed on 2015-02-09 10:01:39 has no hits.

BS08545.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:43:30 Download gff for BS08545.5prime
Subject Subject Range Query Range Percent Splice Strand
Arp11-PA 1..891 17..907 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:43:54 Download gff for BS08545.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12235-PA 1..891 17..907 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:25:54 Download gff for BS08545.5prime
Subject Subject Range Query Range Percent Splice Strand
Arp10-RA 91..989 9..907 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:54:51 Download gff for BS08545.5prime
Subject Subject Range Query Range Percent Splice Strand
Arp10-RA 91..989 9..907 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:54:51 Download gff for BS08545.5prime
Subject Subject Range Query Range Percent Splice Strand
X 19644916..19645582 241..907 100 <- Minus
X 19645633..19645785 88..240 100 <- Minus
X 19645846..19645924 9..87 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:25:54 Download gff for BS08545.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 19538949..19539615 241..907 100 <- Minus
arm_X 19539666..19539818 88..240 100 <- Minus
arm_X 19539879..19539957 9..87 96   Minus

BS08545.complete Sequence

1169 bp (1169 high quality bases) assembled on 2006-01-18

GenBank Submission: FJ636194

> BS08545.complete
GAAGTTATCAGTCGACATGCCCATTTACGAGAGCGTGATGCAGGAGAAGC
CGCCCATTGTCCTCGACATTGGCACCGCCTACACCAAGCTGGGATTCGCA
GCGGAGGCGTATCCGCGCAAGATCATGCCCACGGAGGTGGTGATGACCAC
GACGGGGATCCGGAAGCGTCTGTTCGACTACGACACTCCGGAGGAGCTGT
ACGACCAGCTAGTGGATTTTCTGCAGACGATCTTCTTCAAGCATCTACTG
GTCAGCCCCAAGGAGCGCAAGTTCGTGCTGGTGGAGAACGTGTTCGGATC
CACTGTGCTGCGTGAAACCTTGGCCCGCGTGCTCTTTGTCCACTTCGACG
TCTCCTCCGTGCTGTTCGTGCCCGTGCATCTCATTGCGCTGTCTACGCTG
GCAGTGCCCACTGCCCTTGTGGTGGACGTTGGCTACAGCGAGACCAGCGT
TATGCCCGTCTTCAGCGGGGTGCAAATCATGGCCGCCTTCAAGGATCAGA
GCTACGGAGGCAGCGCCATCCACGCGGAGATCAAGCGGCAGCTGGTTGAG
AGTGGCGTTAAGGAGAGCCTGCTAACAGAAAGCGTGCTGGAGGACATCAA
GGTGCGAACCTGCTTTGTGACCACCATGGAAAGAGCCAAGGCCCGCGCCA
ACGGCGACGAGAATCAGCCGACTCCCGCGCCAGACGTGGACTACATTGTC
AGCGACAACGATGCGGTCATCCAGGTGCCCGGCCTCCTGCGGGAGTCTGC
CTACGAGATCATGTTCGAGGCCAGCAACGAGCGGGACAGCCTGCCGCATC
TCATCCTGCGCTCCATTCTCGACTGCACACTAGACGTGCGACGTGCCCTG
GTCGAGAGTGTGTTCCTCGTGGGCGGCGGCTCAATGGTCCAGGGTCTGCT
GGCCCGCCTCCGCCAGGAGCTGCAGCATCTGCTCACCGAGGATCCGTTCT
ACGCCGAACGCTTCCATGGCGAGCTGCAGTTCAAGTTTTTCAATGCTGTC
GGCAAGCAAAACTTTACTGCCTGGCTGGGCGGCGCCTTGTGCGGCGCGAC
GGATCTCATCCAGACACGATCGCTGGTCAAGGAGACGTATCTAAAGAGCG
AGCACGTTCCCGACTGGAGCAACCTGTGCGATAATAGGCCGACAGGCTCG
TAGAAGCTTTCTAGACCAT

BS08545.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:05:58
Subject Length Description Subject Range Query Range Score Percent Strand
Arp10-RB 1137 CG12235-PB 1..1137 17..1153 5685 100 Plus
Arp10-RA 1137 CG12235-PA 1..1137 17..1153 5685 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:05:59
Subject Length Description Subject Range Query Range Score Percent Strand
Arp10-RB 1536 CG12235-RB 261..1398 17..1154 5690 100 Plus
Arp10-RA 1374 CG12235-RA 99..1236 17..1154 5690 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:05:56
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19644669..19645582 1154..241 4570 100 Minus
X 23542271 X 19645632..19645785 241..88 770 100 Minus
X 23542271 X 19645845..19645916 88..17 360 100 Minus
Blast to na_te.dros performed on 2014-11-27 20:05:57 has no hits.

BS08545.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:02:42 Download gff for BS08545.complete
Subject Subject Range Query Range Percent Splice Strand
Arp11-RA 1..1137 17..1153 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:40:31 Download gff for BS08545.complete
Subject Subject Range Query Range Percent Splice Strand
Arp11-RA 123..1270 9..1158 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:06:46 Download gff for BS08545.complete
Subject Subject Range Query Range Percent Splice Strand
Arp10-RA 99..1235 17..1153 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:02:43 Download gff for BS08545.complete
Subject Subject Range Query Range Percent Splice Strand
Arp11-RA 123..1270 9..1158 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:14:44 Download gff for BS08545.complete
Subject Subject Range Query Range Percent Splice Strand
Arp10-RA 99..1235 17..1153 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:14:44 Download gff for BS08545.complete
Subject Subject Range Query Range Percent Splice Strand
X 19644670..19645582 241..1153 100 <- Minus
X 19645633..19645785 88..240 100 <- Minus
X 19645846..19645916 17..87 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:06:46 Download gff for BS08545.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 19538703..19539615 241..1153 100 <- Minus
arm_X 19539666..19539818 88..240 100 <- Minus
arm_X 19539879..19539949 17..87 100   Minus

BS08545.pep Sequence

Translation from 16 to 1152

> BS08545.pep
MPIYESVMQEKPPIVLDIGTAYTKLGFAAEAYPRKIMPTEVVMTTTGIRK
RLFDYDTPEELYDQLVDFLQTIFFKHLLVSPKERKFVLVENVFGSTVLRE
TLARVLFVHFDVSSVLFVPVHLIALSTLAVPTALVVDVGYSETSVMPVFS
GVQIMAAFKDQSYGGSAIHAEIKRQLVESGVKESLLTESVLEDIKVRTCF
VTTMERAKARANGDENQPTPAPDVDYIVSDNDAVIQVPGLLRESAYEIMF
EASNERDSLPHLILRSILDCTLDVRRALVESVFLVGGGSMVQGLLARLRQ
ELQHLLTEDPFYAERFHGELQFKFFNAVGKQNFTAWLGGALCGATDLIQT
RSLVKETYLKSEHVPDWSNLCDNRPTGS*

BS08545.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:22:46
Subject Length Description Subject Range Query Range Score Percent Strand
Arp10-PB 378 CG12235-PB 1..378 1..378 1921 100 Plus
Arp10-PA 378 CG12235-PA 1..378 1..378 1921 100 Plus
Act57B-PA 376 CG10067-PA 5..366 10..361 212 21.9 Plus
Act87E-PC 376 CG18290-PC 5..366 10..361 210 21.6 Plus
Act87E-PB 376 CG18290-PB 5..366 10..361 210 21.6 Plus