Clone BS08546 Report

Search the DGRC for BS08546

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:85
Well:46
Vector:pDNR-Dual
Associated Gene/TranscriptCaf1-RA
Protein status:BS08546.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08546.3prime Sequence

936 bp (840 high quality bases) assembled on 2006-01-10

> BS08546.3prime
ATGGTCTAGAAAGCTTTTAAGCGGTATTGGTTTCTAACTCGGAGGCGGGA
ATCTCTGGCTCCTCGTCGTTGTAAACATTCTCGGCCATCTGCCAGACCTG
CATAATATTGTCCTCGGACACGGAGCAAATGATCCATGGCTCATTGGGGT
TCCACGAGAAATCGCTAATCTTGGCAGTGTGACCGCCATGGATGAAGAGC
AGCTCGGGTGGTCCGTCCTCAGCATCCTCCGTACTCTGCTCCTCGCCGAT
TTTGGACAAATCCCAGACGTGTAGGCGGCGGTCAGTGCCGGAGGAGGCGA
GAATAGTCTCGTTATGCGGCGACCACTGCACTTGGAAGATCTCGTCCTTG
TGCGACTCGAAGGAATGTAGTTTTAGCTTGAGGTTGCGCAGATCCCATAG
AGCTACAGTCTTGTCAGCGGAGCCCGTGGCCAGAATGAACTCCGAGTAGG
GATTAAAGCTCAAGCAATTGACTTCCGCTGTGTGAGCGTCCACTGTATGC
GAGGGCTTCGAGGTGTTGTTGTTGCGCGTGTCCCAGATCATCAGCTTCTG
GTCGTCAGCCACCGATCCGAACAGAGACTCATGTAGCAGATGCCAAGCCA
CGTCCTCAACAACGGCGGTGTGGCCGGTGAAGATGTTCTTGGCATCAATA
ACCCTATGCTCCTTGGGTGTGGCATTGATGTCCCACAAGCAGATGGTGTG
ATCATCAGAGGCTGACAGCAAATAGCCATTGAGGTTGGGATTCCAAGAGA
GTCCGTAGCCTTCCTTTTGATGACCGCGCAGCCGCAGGTCAGGCTGGCAC
TCGCCAGACGGTTCCGGCTTGCTGGGATGCTTCGTGTAGTCGAAGACCAG
GACATCACTCGACGGCGTCTTGGTGGCGATACACAGGCGTTCTGGGGCAT
GTAGCGGGCCCTGTTCACTTCGCCCTCGTGGTTGAT

BS08546.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:09:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG4236-PA 1293 Caf1-RA 430..1293 880..17 4320 100 Minus
CG4236-PA 1293 Caf1-RA 373..429 936..880 285 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:35:05
Subject Length Description Subject Range Query Range Score Percent Strand
Caf1-RA 1828 CG4236-RA 690..1611 936..16 4585 99.9 Minus
Caf1-RB 1825 CG4236-RB 687..1608 936..16 4585 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:34:59
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15226636..15227347 727..16 3560 100 Minus
3R 32079331 3R 15226316..15226527 936..726 1010 99.5 Minus
Blast to na_te.dros performed on 2015-02-11 17:35:02 has no hits.

BS08546.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:43:31 Download gff for BS08546.3prime
Subject Subject Range Query Range Percent Splice Strand
Caf1-PA 373..1293 17..936 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:43:55 Download gff for BS08546.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4236-PA 373..1293 17..936 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:28:38 Download gff for BS08546.3prime
Subject Subject Range Query Range Percent Splice Strand
Caf1-RB 687..1614 8..936 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:12:05 Download gff for BS08546.3prime
Subject Subject Range Query Range Percent Splice Strand
Caf1-RB 687..1614 8..936 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:12:05 Download gff for BS08546.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 15226316..15226526 727..936 99 -> Minus
3R 15226637..15227353 8..726 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:28:38 Download gff for BS08546.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11052038..11052248 727..936 99 -> Minus
arm_3R 11052359..11053075 8..726 99   Minus

BS08546.5prime Sequence

915 bp (814 high quality bases) assembled on 2006-01-10

> BS08546.5prime
GAAGTTATCAGTCGACATGGTGGATCGCAGCGATAATGCAGCGGAATCCT
TCGACGACGCCGTCGAGGAGCGCGTGATCAATGAGGAGTATAAGATTTGG
AAAAAGAACACGCCGTTCCTGTACGATCTGGTCATGACGCATGCCCTGGA
ATGGCCCTCGTTGACTGCCCAGTGGCTGCCGGACGTGACCAAGCAGGATG
GCAAGGACTACTCGGTACATCGTCTTATACTGGGCACACACACATCTGAC
GAGCAGAACCATCTACTCATCGCCAGCGTTCAGTTGCCCAGCGAGGATGC
CCAGTTCGATGGTTCGCACTACGATAACGAGAAGGGCGAGTTTGGAGGCT
TTGGATCGGTGTGCGGCAAAATCGAAATCGAGATTAAGATCAACCACGAG
GGCGAAGTGAACAGGGCCCGCTACATGCCCCAGAACGCCTGTGTAATCGC
CACCAAGACGCCGTCGAGTGATGTCCTGGTCTTCGACTACACGAAGCATC
CCAGCAAGCCGGAACCGTCTGGCGAGTGCCAGCCTGACCTGCGGCTGCGC
GGTCATCAAAAGGAAGGCTACGGACTCTCTTGGAATCCCAACCTCAATGG
CTATTTGCTGTCAGCCTCTGATGATCACACCATCTGCTTGTGGGACATCA
ATGCCACACCCAAGGAGCATAGGGTTATTGATGCCAAGAACATCTTCACC
GGCCACACCGCCGTTGTTGAGGACGTGGCTTGGCATCTGCTACATGAGTC
TCTGTTCGGATCGGTGGCTGACGACCAGAAGCTGATGATCTGGGACACGC
GCAACAACAACACCTCGAAGCCCTCGCATACAGTGGACGCTCACACAGCG
GAAGTCAATTGCTTGAGCTTTAATCCCTACTCGGAGTTCATTCTGGCCAC
GGGCTCCGCTGACAA

BS08546.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:09:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG4236-PA 1293 Caf1-RA 1..899 17..915 4495 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:47:24
Subject Length Description Subject Range Query Range Score Percent Strand
Caf1-RA 1828 CG4236-RA 313..1216 12..915 4505 99.9 Plus
Caf1-RB 1825 CG4236-RB 313..1213 12..915 4450 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:47:16
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15225965..15226527 38..600 2815 100 Plus
3R 32079331 3R 15226636..15226952 599..915 1585 100 Plus
Blast to na_te.dros performed on 2015-02-11 10:47:19 has no hits.

BS08546.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:43:32 Download gff for BS08546.5prime
Subject Subject Range Query Range Percent Splice Strand
Caf1-PA 1..897 17..913 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:43:57 Download gff for BS08546.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4236-PA 1..897 17..913 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:00:25 Download gff for BS08546.5prime
Subject Subject Range Query Range Percent Splice Strand
Caf1-RA 313..1214 12..913 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:31:53 Download gff for BS08546.5prime
Subject Subject Range Query Range Percent Splice Strand
Caf1-RA 313..1214 12..913 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:31:53 Download gff for BS08546.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 15225888..15225914 12..38 96 -> Plus
3R 15225966..15226526 39..599 100 -> Plus
3R 15226637..15226950 600..913 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:00:25 Download gff for BS08546.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11051610..11051636 12..38 96 -> Plus
arm_3R 11051688..11052248 39..599 100 -> Plus
arm_3R 11052359..11052672 600..913 100   Plus

BS08546.complete Sequence

1325 bp (1325 high quality bases) assembled on 2006-01-18

GenBank Submission: FJ636195

> BS08546.complete
GAAGTTATCAGTCGACATGGTGGATCGCAGCGATAATGCAGCGGAATCCT
TCGACGACGCCGTCGAGGAGCGCGTGATCAATGAGGAGTATAAGATTTGG
AAAAAGAACACGCCGTTCCTGTACGATCTGGTCATGACGCATGCCCTGGA
ATGGCCCTCGTTGACTGCCCAGTGGCTGCCGGACGTGACCAAGCAGGATG
GCAAGGACTACTCGGTACATCGTCTTATACTGGGCACACACACATCTGAC
GAGCAGAACCATCTACTCATCGCCAGCGTTCAGTTGCCCAGCGAGGATGC
CCAGTTCGATGGTTCGCACTACGATAACGAGAAGGGCGAGTTTGGAGGCT
TTGGATCGGTGTGCGGCAAAATCGAAATCGAGATTAAGATCAACCACGAG
GGCGAAGTGAACAGGGCCCGCTACATGCCCCAGAACGCCTGTGTAATCGC
CACCAAGACGCCGTCGAGTGATGTCCTGGTCTTCGACTACACGAAGCATC
CCAGCAAGCCGGAACCGTCTGGCGAGTGCCAGCCTGACCTGCGGCTGCGC
GGTCATCAAAAGGAAGGCTACGGACTCTCTTGGAATCCCAACCTCAATGG
CTATTTGCTGTCAGCCTCTGATGATCACACCATCTGCTTGTGGGACATCA
ATGCCACACCCAAGGAGCATAGGGTTATTGATGCCAAGAACATCTTCACC
GGCCACACCGCCGTTGTTGAGGACGTGGCTTGGCATCTGCTACATGAGTC
TCTGTTCGGATCGGTGGCTGACGACCAGAAGCTGATGATCTGGGACACGC
GCAACAACAACACCTCGAAGCCCTCGCATACAGTGGACGCTCACACAGCG
GAAGTCAATTGCTTGAGCTTTAATCCCTACTCGGAGTTCATTCTGGCCAC
GGGCTCCGCTGACAAGACTGTAGCTCTATGGGATCTGCGCAACCTCAAGC
TAAAACTACATTCCTTCGAGTCGCACAAGGACGAGATCTTCCAAGTGCAG
TGGTCGCCGCATAACGAGACTATTCTCGCCTCCTCCGGCACTGACCGCCG
CCTACACGTCTGGGATTTGTCCAAAATCGGCGAGGAGCAGAGTACGGAGG
ATGCTGAGGACGGACCACCCGAGCTGCTCTTCATCCATGGCGGTCACACT
GCCAAGATTAGCGATTTCTCGTGGAACCCCAATGAGCCATGGATCATTTG
CTCCGTGTCCGAGGACAATATTATGCAGGTCTGGCAGATGGCCGAGAATG
TTTACAACGACGAGGAGCCAGAGATTCCCGCCTCCGAGTTAGAAACCAAT
ACCGCTTAAAAGCTTTCTAGACCAT

BS08546.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:39:46
Subject Length Description Subject Range Query Range Score Percent Strand
Caf1-RA 1293 CG4236-PA 1..1293 17..1309 6465 100 Plus
Caf1-RB 1290 CG4236-PB 1..1290 17..1309 6385 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:39:48
Subject Length Description Subject Range Query Range Score Percent Strand
Caf1-RA 1828 CG4236-RA 313..1611 12..1310 6480 99.9 Plus
Caf1-RB 1825 CG4236-RB 313..1608 12..1310 6400 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:39:44
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15226636..15227347 599..1310 3560 100 Plus
3R 32079331 3R 15225965..15226527 38..600 2815 100 Plus
Blast to na_te.dros performed on 2014-11-27 20:39:45 has no hits.

BS08546.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:02:44 Download gff for BS08546.complete
Subject Subject Range Query Range Percent Splice Strand
Caf1-RA 1..1293 17..1309 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:40:32 Download gff for BS08546.complete
Subject Subject Range Query Range Percent Splice Strand
Caf1-RA 322..1626 12..1318 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:10:08 Download gff for BS08546.complete
Subject Subject Range Query Range Percent Splice Strand
Caf1-RA 318..1608 17..1307 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:02:44 Download gff for BS08546.complete
Subject Subject Range Query Range Percent Splice Strand
Caf1-RA 322..1626 12..1318 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:25:51 Download gff for BS08546.complete
Subject Subject Range Query Range Percent Splice Strand
Caf1-RA 318..1608 17..1307 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:25:51 Download gff for BS08546.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15225893..15225914 17..38 100 -> Plus
3R 15225966..15226526 39..599 100 -> Plus
3R 15226637..15227344 600..1307 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:10:08 Download gff for BS08546.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11051615..11051636 17..38 100 -> Plus
arm_3R 11051688..11052248 39..599 100 -> Plus
arm_3R 11052359..11053066 600..1307 100   Plus

BS08546.pep Sequence

Translation from 16 to 1308

> BS08546.pep
MVDRSDNAAESFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLT
AQWLPDVTKQDGKDYSVHRLILGTHTSDEQNHLLIASVQLPSEDAQFDGS
HYDNEKGEFGGFGSVCGKIEIEIKINHEGEVNRARYMPQNACVIATKTPS
SDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSA
SDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSV
ADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADK
TVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWD
LSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSED
NIMQVWQMAENVYNDEEPEIPASELETNTA*

BS08546.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:22:42
Subject Length Description Subject Range Query Range Score Percent Strand
Caf1-PA 430 CG4236-PA 1..430 1..430 2327 100 Plus
Caf1-PB 429 CG4236-PB 1..429 1..430 2311 99.8 Plus
l(2)09851-PB 456 CG12792-PB 24..444 5..398 337 27.6 Plus
l(2)09851-PA 456 CG12792-PA 24..444 5..398 337 27.6 Plus
Pex7-PB 339 CG6486-PB 22..328 79..406 255 25.6 Plus