Clone Sequence Records
BS08546.3prime Sequence
936 bp (840 high quality bases) assembled on 2006-01-10
> BS08546.3prime
ATGGTCTAGAAAGCTTTTAAGCGGTATTGGTTTCTAACTCGGAGGCGGGA
ATCTCTGGCTCCTCGTCGTTGTAAACATTCTCGGCCATCTGCCAGACCTG
CATAATATTGTCCTCGGACACGGAGCAAATGATCCATGGCTCATTGGGGT
TCCACGAGAAATCGCTAATCTTGGCAGTGTGACCGCCATGGATGAAGAGC
AGCTCGGGTGGTCCGTCCTCAGCATCCTCCGTACTCTGCTCCTCGCCGAT
TTTGGACAAATCCCAGACGTGTAGGCGGCGGTCAGTGCCGGAGGAGGCGA
GAATAGTCTCGTTATGCGGCGACCACTGCACTTGGAAGATCTCGTCCTTG
TGCGACTCGAAGGAATGTAGTTTTAGCTTGAGGTTGCGCAGATCCCATAG
AGCTACAGTCTTGTCAGCGGAGCCCGTGGCCAGAATGAACTCCGAGTAGG
GATTAAAGCTCAAGCAATTGACTTCCGCTGTGTGAGCGTCCACTGTATGC
GAGGGCTTCGAGGTGTTGTTGTTGCGCGTGTCCCAGATCATCAGCTTCTG
GTCGTCAGCCACCGATCCGAACAGAGACTCATGTAGCAGATGCCAAGCCA
CGTCCTCAACAACGGCGGTGTGGCCGGTGAAGATGTTCTTGGCATCAATA
ACCCTATGCTCCTTGGGTGTGGCATTGATGTCCCACAAGCAGATGGTGTG
ATCATCAGAGGCTGACAGCAAATAGCCATTGAGGTTGGGATTCCAAGAGA
GTCCGTAGCCTTCCTTTTGATGACCGCGCAGCCGCAGGTCAGGCTGGCAC
TCGCCAGACGGTTCCGGCTTGCTGGGATGCTTCGTGTAGTCGAAGACCAG
GACATCACTCGACGGCGTCTTGGTGGCGATACACAGGCGTTCTGGGGCAT
GTAGCGGGCCCTGTTCACTTCGCCCTCGTGGTTGAT
BS08546.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:09:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4236-PA | 1293 | Caf1-RA | 430..1293 | 880..17 | 4320 | 100 | Minus |
CG4236-PA | 1293 | Caf1-RA | 373..429 | 936..880 | 285 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:35:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Caf1-RA | 1828 | CG4236-RA | 690..1611 | 936..16 | 4585 | 99.9 | Minus |
Caf1-RB | 1825 | CG4236-RB | 687..1608 | 936..16 | 4585 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:34:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15226636..15227347 | 727..16 | 3560 | 100 | Minus |
3R | 32079331 | 3R | 15226316..15226527 | 936..726 | 1010 | 99.5 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:35:02 has no hits.
BS08546.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:43:31 Download gff for
BS08546.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Caf1-PA | 373..1293 | 17..936 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:43:55 Download gff for
BS08546.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4236-PA | 373..1293 | 17..936 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:28:38 Download gff for
BS08546.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Caf1-RB | 687..1614 | 8..936 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:12:05 Download gff for
BS08546.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Caf1-RB | 687..1614 | 8..936 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:12:05 Download gff for
BS08546.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15226316..15226526 | 727..936 | 99 | -> | Minus |
3R | 15226637..15227353 | 8..726 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:28:38 Download gff for
BS08546.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11052038..11052248 | 727..936 | 99 | -> | Minus |
arm_3R | 11052359..11053075 | 8..726 | 99 | | Minus |
BS08546.5prime Sequence
915 bp (814 high quality bases) assembled on 2006-01-10
> BS08546.5prime
GAAGTTATCAGTCGACATGGTGGATCGCAGCGATAATGCAGCGGAATCCT
TCGACGACGCCGTCGAGGAGCGCGTGATCAATGAGGAGTATAAGATTTGG
AAAAAGAACACGCCGTTCCTGTACGATCTGGTCATGACGCATGCCCTGGA
ATGGCCCTCGTTGACTGCCCAGTGGCTGCCGGACGTGACCAAGCAGGATG
GCAAGGACTACTCGGTACATCGTCTTATACTGGGCACACACACATCTGAC
GAGCAGAACCATCTACTCATCGCCAGCGTTCAGTTGCCCAGCGAGGATGC
CCAGTTCGATGGTTCGCACTACGATAACGAGAAGGGCGAGTTTGGAGGCT
TTGGATCGGTGTGCGGCAAAATCGAAATCGAGATTAAGATCAACCACGAG
GGCGAAGTGAACAGGGCCCGCTACATGCCCCAGAACGCCTGTGTAATCGC
CACCAAGACGCCGTCGAGTGATGTCCTGGTCTTCGACTACACGAAGCATC
CCAGCAAGCCGGAACCGTCTGGCGAGTGCCAGCCTGACCTGCGGCTGCGC
GGTCATCAAAAGGAAGGCTACGGACTCTCTTGGAATCCCAACCTCAATGG
CTATTTGCTGTCAGCCTCTGATGATCACACCATCTGCTTGTGGGACATCA
ATGCCACACCCAAGGAGCATAGGGTTATTGATGCCAAGAACATCTTCACC
GGCCACACCGCCGTTGTTGAGGACGTGGCTTGGCATCTGCTACATGAGTC
TCTGTTCGGATCGGTGGCTGACGACCAGAAGCTGATGATCTGGGACACGC
GCAACAACAACACCTCGAAGCCCTCGCATACAGTGGACGCTCACACAGCG
GAAGTCAATTGCTTGAGCTTTAATCCCTACTCGGAGTTCATTCTGGCCAC
GGGCTCCGCTGACAA
BS08546.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:09:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4236-PA | 1293 | Caf1-RA | 1..899 | 17..915 | 4495 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:47:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Caf1-RA | 1828 | CG4236-RA | 313..1216 | 12..915 | 4505 | 99.9 | Plus |
Caf1-RB | 1825 | CG4236-RB | 313..1213 | 12..915 | 4450 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:47:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15225965..15226527 | 38..600 | 2815 | 100 | Plus |
3R | 32079331 | 3R | 15226636..15226952 | 599..915 | 1585 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:47:19 has no hits.
BS08546.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:43:32 Download gff for
BS08546.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Caf1-PA | 1..897 | 17..913 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:43:57 Download gff for
BS08546.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4236-PA | 1..897 | 17..913 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:00:25 Download gff for
BS08546.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Caf1-RA | 313..1214 | 12..913 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:31:53 Download gff for
BS08546.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Caf1-RA | 313..1214 | 12..913 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:31:53 Download gff for
BS08546.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15225888..15225914 | 12..38 | 96 | -> | Plus |
3R | 15225966..15226526 | 39..599 | 100 | -> | Plus |
3R | 15226637..15226950 | 600..913 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:00:25 Download gff for
BS08546.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11051610..11051636 | 12..38 | 96 | -> | Plus |
arm_3R | 11051688..11052248 | 39..599 | 100 | -> | Plus |
arm_3R | 11052359..11052672 | 600..913 | 100 | | Plus |
BS08546.complete Sequence
1325 bp (1325 high quality bases) assembled on 2006-01-18
GenBank Submission: FJ636195
> BS08546.complete
GAAGTTATCAGTCGACATGGTGGATCGCAGCGATAATGCAGCGGAATCCT
TCGACGACGCCGTCGAGGAGCGCGTGATCAATGAGGAGTATAAGATTTGG
AAAAAGAACACGCCGTTCCTGTACGATCTGGTCATGACGCATGCCCTGGA
ATGGCCCTCGTTGACTGCCCAGTGGCTGCCGGACGTGACCAAGCAGGATG
GCAAGGACTACTCGGTACATCGTCTTATACTGGGCACACACACATCTGAC
GAGCAGAACCATCTACTCATCGCCAGCGTTCAGTTGCCCAGCGAGGATGC
CCAGTTCGATGGTTCGCACTACGATAACGAGAAGGGCGAGTTTGGAGGCT
TTGGATCGGTGTGCGGCAAAATCGAAATCGAGATTAAGATCAACCACGAG
GGCGAAGTGAACAGGGCCCGCTACATGCCCCAGAACGCCTGTGTAATCGC
CACCAAGACGCCGTCGAGTGATGTCCTGGTCTTCGACTACACGAAGCATC
CCAGCAAGCCGGAACCGTCTGGCGAGTGCCAGCCTGACCTGCGGCTGCGC
GGTCATCAAAAGGAAGGCTACGGACTCTCTTGGAATCCCAACCTCAATGG
CTATTTGCTGTCAGCCTCTGATGATCACACCATCTGCTTGTGGGACATCA
ATGCCACACCCAAGGAGCATAGGGTTATTGATGCCAAGAACATCTTCACC
GGCCACACCGCCGTTGTTGAGGACGTGGCTTGGCATCTGCTACATGAGTC
TCTGTTCGGATCGGTGGCTGACGACCAGAAGCTGATGATCTGGGACACGC
GCAACAACAACACCTCGAAGCCCTCGCATACAGTGGACGCTCACACAGCG
GAAGTCAATTGCTTGAGCTTTAATCCCTACTCGGAGTTCATTCTGGCCAC
GGGCTCCGCTGACAAGACTGTAGCTCTATGGGATCTGCGCAACCTCAAGC
TAAAACTACATTCCTTCGAGTCGCACAAGGACGAGATCTTCCAAGTGCAG
TGGTCGCCGCATAACGAGACTATTCTCGCCTCCTCCGGCACTGACCGCCG
CCTACACGTCTGGGATTTGTCCAAAATCGGCGAGGAGCAGAGTACGGAGG
ATGCTGAGGACGGACCACCCGAGCTGCTCTTCATCCATGGCGGTCACACT
GCCAAGATTAGCGATTTCTCGTGGAACCCCAATGAGCCATGGATCATTTG
CTCCGTGTCCGAGGACAATATTATGCAGGTCTGGCAGATGGCCGAGAATG
TTTACAACGACGAGGAGCCAGAGATTCCCGCCTCCGAGTTAGAAACCAAT
ACCGCTTAAAAGCTTTCTAGACCAT
BS08546.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:39:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Caf1-RA | 1293 | CG4236-PA | 1..1293 | 17..1309 | 6465 | 100 | Plus |
Caf1-RB | 1290 | CG4236-PB | 1..1290 | 17..1309 | 6385 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:39:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Caf1-RA | 1828 | CG4236-RA | 313..1611 | 12..1310 | 6480 | 99.9 | Plus |
Caf1-RB | 1825 | CG4236-RB | 313..1608 | 12..1310 | 6400 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:39:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15226636..15227347 | 599..1310 | 3560 | 100 | Plus |
3R | 32079331 | 3R | 15225965..15226527 | 38..600 | 2815 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:39:45 has no hits.
BS08546.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:02:44 Download gff for
BS08546.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Caf1-RA | 1..1293 | 17..1309 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:40:32 Download gff for
BS08546.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Caf1-RA | 322..1626 | 12..1318 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:10:08 Download gff for
BS08546.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Caf1-RA | 318..1608 | 17..1307 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:02:44 Download gff for
BS08546.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Caf1-RA | 322..1626 | 12..1318 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:25:51 Download gff for
BS08546.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Caf1-RA | 318..1608 | 17..1307 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:25:51 Download gff for
BS08546.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15225893..15225914 | 17..38 | 100 | -> | Plus |
3R | 15225966..15226526 | 39..599 | 100 | -> | Plus |
3R | 15226637..15227344 | 600..1307 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:10:08 Download gff for
BS08546.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11051615..11051636 | 17..38 | 100 | -> | Plus |
arm_3R | 11051688..11052248 | 39..599 | 100 | -> | Plus |
arm_3R | 11052359..11053066 | 600..1307 | 100 | | Plus |
BS08546.pep Sequence
Translation from 16 to 1308
> BS08546.pep
MVDRSDNAAESFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLT
AQWLPDVTKQDGKDYSVHRLILGTHTSDEQNHLLIASVQLPSEDAQFDGS
HYDNEKGEFGGFGSVCGKIEIEIKINHEGEVNRARYMPQNACVIATKTPS
SDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSA
SDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSV
ADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADK
TVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWD
LSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSED
NIMQVWQMAENVYNDEEPEIPASELETNTA*
BS08546.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:22:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Caf1-PA | 430 | CG4236-PA | 1..430 | 1..430 | 2327 | 100 | Plus |
Caf1-PB | 429 | CG4236-PB | 1..429 | 1..430 | 2311 | 99.8 | Plus |
l(2)09851-PB | 456 | CG12792-PB | 24..444 | 5..398 | 337 | 27.6 | Plus |
l(2)09851-PA | 456 | CG12792-PA | 24..444 | 5..398 | 337 | 27.6 | Plus |
Pex7-PB | 339 | CG6486-PB | 22..328 | 79..406 | 255 | 25.6 | Plus |