Clone Sequence Records
BS08555.3prime Sequence
894 bp (870 high quality bases) assembled on 2006-01-10
> BS08555.3prime
ATGGTCTAGAAAGCTTCTAGGTCCTGGGAAATTGCTTGTCGTACTGGCCG
ATGACGTACTTCAGCTTCCTGATGGCCAGGTCCACTTGCTCATCGTCCAC
CTGATGGTAGAGCACAAGTCTCGCAAATGCCCAATCCCGGGCACTAGCCT
TCACCACGATTCCGGCTCCGTTTTTGTCCTTCACTCCGGCTTCCACTTCA
CCAGCATCAACGATGCTCAACCGGGTGGAGAACTCACTGGCCGTCAGTTT
GGGTTGGGTTATCTCTACCAGAAGGATATTGCTCTGGACAGACGACACGT
GTACGGTAATGTTGGGACTTTTCAGTTCATATATAGCGTTGGCAATTTTA
TTGGTCCGCTCGTGATCTTTGCTCAGAAGTGGTACCACTTCATCCAAAGC
TACCAGTCCAGCTGCTGCTAACACTCCCACCTGCCGCATTCCGCCTCCCA
AAGCTTTGCGCAGTCGATGGGCTTCCGAAATGAAGGCCTTGGAGCCGACT
AACACGGATCCCACGGGAGCCGATAAGCCCTTGCTGAGGCAGATAGATAC
CGAATCGAAATCGCGGCAGATGCGCTCCACTCCCACGCCCAAGGCGGTGG
CCGCATTAAAGACCCTCGCTCCGTCCATGTGTAGAGCGATACGGGCGTTC
CCAGTGCCCACGCCCGGCTGTCGGACCAGAGCAGCTAGCTCATCCAAGAA
GGCCAGAGGCACCACTTTGCCACCGCAGATATTGTGGGTCTGCTCCACCA
CCACCAGCGAGGTGATGGGCTCGTGGCAGTCTTCGTGGCGTATCCTGCGG
CGCAGATCCTGCAGACTAAAGGTGCCATCCTGCTCGTTCTTCAGAGTGGC
TAATTGGACTCCGGCCAAATGCGAGGCGCCACCCTTGTCGTACA
BS08555.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:09:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10184-PA | 1152 | CG10184-RA | 286..1152 | 883..17 | 4335 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:11:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10184-RA | 1330 | CG10184-RA | 361..1239 | 894..16 | 4350 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:11:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23603354..23603763 | 474..883 | 2050 | 100 | Plus |
3R | 32079331 | 3R | 23602598..23602919 | 16..337 | 1610 | 100 | Plus |
3R | 32079331 | 3R | 23602977..23603113 | 337..473 | 685 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:11:24 has no hits.
BS08555.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:43:47 Download gff for
BS08555.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10184-PA | 276..1152 | 17..893 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:44:18 Download gff for
BS08555.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10184-PA | 276..1152 | 17..893 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:40:31 Download gff for
BS08555.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10184-RA | 362..1247 | 7..893 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:53:36 Download gff for
BS08555.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10184-RA | 362..1247 | 7..893 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:53:36 Download gff for
BS08555.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23602977..23603113 | 337..473 | 100 | <- | Plus |
3R | 23602590..23602918 | 7..336 | 98 | <- | Plus |
3R | 23603354..23603770 | 474..891 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:40:31 Download gff for
BS08555.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19428699..19428835 | 337..473 | 100 | <- | Plus |
arm_3R | 19428312..19428640 | 7..336 | 98 | <- | Plus |
arm_3R | 19429076..19429492 | 474..891 | 99 | | Plus |
BS08555.5prime Sequence
924 bp (829 high quality bases) assembled on 2006-01-10
> BS08555.5prime
GAAGTTATCAGTCGACATGACCACCCATTCCGTTGTTGACCTGCGCTCGG
ACACCGTCAGCCAGCCGACGGACAAGATGCGGGCCCGGATGGCCACCGCC
GTGGTCGGGGATGACGTTTATGGCGAGGATCCCACCGTCAACGAACTGGA
GGCGCGAACAGCGGCCATTTTCGGCAAGGAGGCGGGCCTCTTTGTGCCCA
GCGGCACCATGGGAAATCTACTGGCAATTATGGTTCACTGCCATCGTCGT
GGCACGGAGGCCCTGGTCGGCGATTTATCGCACATCTTTCTGTACGAACA
AGGTGGCGCCTCGCATTTGGCCGGAGTCCAATTAGCCACTCTGAAGAACG
AGCAGGATGGCACCTTTAGTCTGCAGGATCTGCGCCGCAGGATACGCCAC
GAAGACTGCCACGAGCCCATCACCTCGCTGGTGGTGGTGGAGCAGACCCA
CAATATCTGCGGTGGCAAAGTGGTGCCTCTGGCCTTCTTGGATGAGCTAG
CTGCTCTGGTCCGACAGCCGGGCGTGGGCACTGGGAACGCCCGTATCGCT
CTACACATGGACGGAGCGAGGGTCTTTAATGCGGCCACCGCCTTGGGCGT
GGGAGTGGAGCGCATCTGCCGCGATTTCGATTCGGTATCTATCTGCCTCA
GCAAGGGCTTATCGGCTCCCGTGGGATCCGTGTTAGTCGGCTCCAAGGCC
TTCATTTCGGAAGCCCATCGACTGCGCAAAGCTTTGGGAGGCGGAATGCG
GCAGGTGGGAGTGTTAGCAGCAGCTGGACTGGTAGCTTTGGATGAAGTGG
TACCACTTCTGAGCAAAGATCACGAGCGGACCAATAAAATTGCTCACGCT
ATATATGAACTGAAAAGTCCCAACATTACCGTACACGTGTCGTCTGTCCA
GAGCAATATCCTTCTGGTAGAGAT
BS08555.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:09:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10184-PA | 1152 | CG10184-RA | 1..908 | 17..924 | 4490 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:52:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10184-RA | 1330 | CG10184-RA | 87..994 | 17..924 | 4510 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:52:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23603354..23603764 | 711..301 | 2055 | 100 | Minus |
3R | 32079331 | 3R | 23604814..23605024 | 227..17 | 1055 | 100 | Minus |
3R | 32079331 | 3R | 23602982..23603113 | 843..712 | 660 | 100 | Minus |
3R | 32079331 | 3R | 23603825..23603902 | 305..228 | 390 | 100 | Minus |
3R | 32079331 | 3R | 23602843..23602919 | 924..848 | 385 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:52:33 has no hits.
BS08555.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:43:48 Download gff for
BS08555.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10184-PA | 1..908 | 17..924 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:44:19 Download gff for
BS08555.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10184-PA | 1..908 | 17..924 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:29:06 Download gff for
BS08555.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10184-RA | 87..994 | 17..924 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:58:56 Download gff for
BS08555.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10184-RA | 87..994 | 17..924 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:58:56 Download gff for
BS08555.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23602843..23602918 | 849..924 | 100 | <- | Minus |
3R | 23602977..23603113 | 712..848 | 98 | <- | Minus |
3R | 23603354..23603762 | 303..711 | 100 | <- | Minus |
3R | 23603828..23603902 | 228..302 | 100 | <- | Minus |
3R | 23604814..23605030 | 9..227 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:29:06 Download gff for
BS08555.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19428565..19428640 | 849..924 | 100 | <- | Minus |
arm_3R | 19428699..19428835 | 712..848 | 98 | <- | Minus |
arm_3R | 19429076..19429484 | 303..711 | 100 | <- | Minus |
arm_3R | 19429550..19429624 | 228..302 | 100 | <- | Minus |
arm_3R | 19430536..19430752 | 9..227 | 98 | | Minus |
BS08555.complete Sequence
1184 bp (1184 high quality bases) assembled on 2006-01-18
GenBank Submission: FJ636196
> BS08555.complete
GAAGTTATCAGTCGACATGACCACCCATTCCGTTGTTGACCTGCGCTCGG
ACACCGTCAGCCAGCCGACGGACAAGATGCGGGCCCGGATGGCCACCGCC
GTGGTCGGGGATGACGTTTATGGCGAGGATCCCACCGTCAACGAACTGGA
GGCGCGAACAGCGGCCATTTTCGGCAAGGAGGCGGGCCTCTTTGTGCCCA
GCGGCACCATGGGAAATCTACTGGCAATTATGGTTCACTGCCATCGTCGT
GGCACGGAGGCCCTGGTCGGCGATTTATCGCACATCTTTCTGTACGAACA
AGGTGGCGCCTCGCATTTGGCCGGAGTCCAATTAGCCACTCTGAAGAACG
AGCAGGATGGCACCTTTAGTCTGCAGGATCTGCGCCGCAGGATACGCCAC
GAAGACTGCCACGAGCCCATCACCTCGCTGGTGGTGGTGGAGCAGACCCA
CAATATCTGCGGTGGCAAAGTGGTGCCTCTGGCCTTCTTGGATGAGCTAG
CTGCTCTGGTCCGACAGCCGGGCGTGGGCACTGGGAACGCCCGTATCGCT
CTACACATGGACGGAGCGAGGGTCTTTAATGCGGCCACCGCCTTGGGCGT
GGGAGTGGAGCGCATCTGCCGCGATTTCGATTCGGTATCTATCTGCCTCA
GCAAGGGCTTATCGGCTCCCGTGGGATCCGTGTTAGTCGGCTCCAAGGCC
TTCATTTCGGAAGCCCATCGACTGCGCAAAGCTTTGGGAGGCGGAATGCG
GCAGGTGGGAGTGTTAGCAGCAGCTGGACTGGTAGCTTTGGATGAAGTGG
TACCACTTCTGAGCAAAGATCACGAGCGGACCAATAAAATTGCCAACGCT
ATATATGAACTGAAAAGTCCCAACATTACCGTACACGTGTCGTCTGTCCA
GAGCAATATCCTTCTGGTAGAGATAACCCAACCCAAACTGACGGCCAGTG
AGTTCTCCACCCGGTTGAGCATCGTTGATGCTGGTGAAGTGGAAGCCGGA
GTGAAGGACAAAAACGGAGCCGGAATCGTGGTGAAGGCTAGTGCCCGGGA
TTGGGCATTTGCGAGACTTGTGCTCTACCATCAGGTGGACGATGAGCAAG
TGGACCTGGCCATCAGGAAGCTGAAGTACGTCATCGGCCAGTACGACAAG
CAATTTCCCAGGACCTAGAAGCTTTCTAGACCAT
BS08555.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:11:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10184-RA | 1152 | CG10184-PA | 1..1152 | 17..1168 | 5760 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:11:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10184-RA | 1330 | CG10184-RA | 87..1239 | 17..1169 | 5765 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:11:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23603354..23603764 | 711..301 | 2055 | 100 | Minus |
3R | 32079331 | 3R | 23602598..23602919 | 1169..848 | 1610 | 100 | Minus |
3R | 32079331 | 3R | 23604814..23605024 | 227..17 | 1055 | 100 | Minus |
3R | 32079331 | 3R | 23602977..23603113 | 848..712 | 685 | 100 | Minus |
3R | 32079331 | 3R | 23603825..23603902 | 305..228 | 390 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:11:23 has no hits.
BS08555.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:02:45 Download gff for
BS08555.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10184-RA | 1..1152 | 17..1168 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:40:34 Download gff for
BS08555.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10184-RA | 79..1239 | 17..1178 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:36:03 Download gff for
BS08555.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10184-RA | 87..1238 | 17..1168 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:02:45 Download gff for
BS08555.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10184-RA | 79..1239 | 17..1178 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:05:25 Download gff for
BS08555.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10184-RA | 87..1238 | 17..1168 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:05:25 Download gff for
BS08555.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23604814..23605024 | 17..227 | 100 | | Minus |
3R | 23602599..23602918 | 849..1168 | 100 | <- | Minus |
3R | 23602977..23603113 | 712..848 | 100 | <- | Minus |
3R | 23603354..23603762 | 303..711 | 100 | <- | Minus |
3R | 23603828..23603902 | 228..302 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:36:03 Download gff for
BS08555.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19430536..19430746 | 17..227 | 100 | | Minus |
arm_3R | 19428321..19428640 | 849..1168 | 100 | <- | Minus |
arm_3R | 19428699..19428835 | 712..848 | 100 | <- | Minus |
arm_3R | 19429076..19429484 | 303..711 | 100 | <- | Minus |
arm_3R | 19429550..19429624 | 228..302 | 100 | <- | Minus |
BS08555.pep Sequence
Translation from 16 to 1167
> BS08555.pep
MTTHSVVDLRSDTVSQPTDKMRARMATAVVGDDVYGEDPTVNELEARTAA
IFGKEAGLFVPSGTMGNLLAIMVHCHRRGTEALVGDLSHIFLYEQGGASH
LAGVQLATLKNEQDGTFSLQDLRRRIRHEDCHEPITSLVVVEQTHNICGG
KVVPLAFLDELAALVRQPGVGTGNARIALHMDGARVFNAATALGVGVERI
CRDFDSVSICLSKGLSAPVGSVLVGSKAFISEAHRLRKALGGGMRQVGVL
AAAGLVALDEVVPLLSKDHERTNKIANAIYELKSPNITVHVSSVQSNILL
VEITQPKLTASEFSTRLSIVDAGEVEAGVKDKNGAGIVVKASARDWAFAR
LVLYHQVDDEQVDLAIRKLKYVIGQYDKQFPRT*
BS08555.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:22:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10184-PA | 383 | CG10184-PA | 1..383 | 1..383 | 1927 | 100 | Plus |