Clone BS08555 Report

Search the DGRC for BS08555

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:85
Well:55
Vector:pDNR-Dual
Associated Gene/TranscriptCG10184-RA
Protein status:BS08555.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08555.3prime Sequence

894 bp (870 high quality bases) assembled on 2006-01-10

> BS08555.3prime
ATGGTCTAGAAAGCTTCTAGGTCCTGGGAAATTGCTTGTCGTACTGGCCG
ATGACGTACTTCAGCTTCCTGATGGCCAGGTCCACTTGCTCATCGTCCAC
CTGATGGTAGAGCACAAGTCTCGCAAATGCCCAATCCCGGGCACTAGCCT
TCACCACGATTCCGGCTCCGTTTTTGTCCTTCACTCCGGCTTCCACTTCA
CCAGCATCAACGATGCTCAACCGGGTGGAGAACTCACTGGCCGTCAGTTT
GGGTTGGGTTATCTCTACCAGAAGGATATTGCTCTGGACAGACGACACGT
GTACGGTAATGTTGGGACTTTTCAGTTCATATATAGCGTTGGCAATTTTA
TTGGTCCGCTCGTGATCTTTGCTCAGAAGTGGTACCACTTCATCCAAAGC
TACCAGTCCAGCTGCTGCTAACACTCCCACCTGCCGCATTCCGCCTCCCA
AAGCTTTGCGCAGTCGATGGGCTTCCGAAATGAAGGCCTTGGAGCCGACT
AACACGGATCCCACGGGAGCCGATAAGCCCTTGCTGAGGCAGATAGATAC
CGAATCGAAATCGCGGCAGATGCGCTCCACTCCCACGCCCAAGGCGGTGG
CCGCATTAAAGACCCTCGCTCCGTCCATGTGTAGAGCGATACGGGCGTTC
CCAGTGCCCACGCCCGGCTGTCGGACCAGAGCAGCTAGCTCATCCAAGAA
GGCCAGAGGCACCACTTTGCCACCGCAGATATTGTGGGTCTGCTCCACCA
CCACCAGCGAGGTGATGGGCTCGTGGCAGTCTTCGTGGCGTATCCTGCGG
CGCAGATCCTGCAGACTAAAGGTGCCATCCTGCTCGTTCTTCAGAGTGGC
TAATTGGACTCCGGCCAAATGCGAGGCGCCACCCTTGTCGTACA

BS08555.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:09:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG10184-PA 1152 CG10184-RA 286..1152 883..17 4335 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:11:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG10184-RA 1330 CG10184-RA 361..1239 894..16 4350 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:11:23
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23603354..23603763 474..883 2050 100 Plus
3R 32079331 3R 23602598..23602919 16..337 1610 100 Plus
3R 32079331 3R 23602977..23603113 337..473 685 100 Plus
Blast to na_te.dros performed on 2015-02-12 04:11:24 has no hits.

BS08555.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:43:47 Download gff for BS08555.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10184-PA 276..1152 17..893 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:44:18 Download gff for BS08555.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10184-PA 276..1152 17..893 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:40:31 Download gff for BS08555.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10184-RA 362..1247 7..893 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:53:36 Download gff for BS08555.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10184-RA 362..1247 7..893 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:53:36 Download gff for BS08555.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 23602977..23603113 337..473 100 <- Plus
3R 23602590..23602918 7..336 98 <- Plus
3R 23603354..23603770 474..891 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:40:31 Download gff for BS08555.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19428699..19428835 337..473 100 <- Plus
arm_3R 19428312..19428640 7..336 98 <- Plus
arm_3R 19429076..19429492 474..891 99   Plus

BS08555.5prime Sequence

924 bp (829 high quality bases) assembled on 2006-01-10

> BS08555.5prime
GAAGTTATCAGTCGACATGACCACCCATTCCGTTGTTGACCTGCGCTCGG
ACACCGTCAGCCAGCCGACGGACAAGATGCGGGCCCGGATGGCCACCGCC
GTGGTCGGGGATGACGTTTATGGCGAGGATCCCACCGTCAACGAACTGGA
GGCGCGAACAGCGGCCATTTTCGGCAAGGAGGCGGGCCTCTTTGTGCCCA
GCGGCACCATGGGAAATCTACTGGCAATTATGGTTCACTGCCATCGTCGT
GGCACGGAGGCCCTGGTCGGCGATTTATCGCACATCTTTCTGTACGAACA
AGGTGGCGCCTCGCATTTGGCCGGAGTCCAATTAGCCACTCTGAAGAACG
AGCAGGATGGCACCTTTAGTCTGCAGGATCTGCGCCGCAGGATACGCCAC
GAAGACTGCCACGAGCCCATCACCTCGCTGGTGGTGGTGGAGCAGACCCA
CAATATCTGCGGTGGCAAAGTGGTGCCTCTGGCCTTCTTGGATGAGCTAG
CTGCTCTGGTCCGACAGCCGGGCGTGGGCACTGGGAACGCCCGTATCGCT
CTACACATGGACGGAGCGAGGGTCTTTAATGCGGCCACCGCCTTGGGCGT
GGGAGTGGAGCGCATCTGCCGCGATTTCGATTCGGTATCTATCTGCCTCA
GCAAGGGCTTATCGGCTCCCGTGGGATCCGTGTTAGTCGGCTCCAAGGCC
TTCATTTCGGAAGCCCATCGACTGCGCAAAGCTTTGGGAGGCGGAATGCG
GCAGGTGGGAGTGTTAGCAGCAGCTGGACTGGTAGCTTTGGATGAAGTGG
TACCACTTCTGAGCAAAGATCACGAGCGGACCAATAAAATTGCTCACGCT
ATATATGAACTGAAAAGTCCCAACATTACCGTACACGTGTCGTCTGTCCA
GAGCAATATCCTTCTGGTAGAGAT

BS08555.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:09:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG10184-PA 1152 CG10184-RA 1..908 17..924 4490 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:52:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG10184-RA 1330 CG10184-RA 87..994 17..924 4510 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:52:30
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23603354..23603764 711..301 2055 100 Minus
3R 32079331 3R 23604814..23605024 227..17 1055 100 Minus
3R 32079331 3R 23602982..23603113 843..712 660 100 Minus
3R 32079331 3R 23603825..23603902 305..228 390 100 Minus
3R 32079331 3R 23602843..23602919 924..848 385 100 Minus
Blast to na_te.dros performed on 2015-02-12 11:52:33 has no hits.

BS08555.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:43:48 Download gff for BS08555.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10184-PA 1..908 17..924 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:44:19 Download gff for BS08555.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10184-PA 1..908 17..924 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:29:06 Download gff for BS08555.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10184-RA 87..994 17..924 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:58:56 Download gff for BS08555.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10184-RA 87..994 17..924 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:58:56 Download gff for BS08555.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 23602843..23602918 849..924 100 <- Minus
3R 23602977..23603113 712..848 98 <- Minus
3R 23603354..23603762 303..711 100 <- Minus
3R 23603828..23603902 228..302 100 <- Minus
3R 23604814..23605030 9..227 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:29:06 Download gff for BS08555.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19428565..19428640 849..924 100 <- Minus
arm_3R 19428699..19428835 712..848 98 <- Minus
arm_3R 19429076..19429484 303..711 100 <- Minus
arm_3R 19429550..19429624 228..302 100 <- Minus
arm_3R 19430536..19430752 9..227 98   Minus

BS08555.complete Sequence

1184 bp (1184 high quality bases) assembled on 2006-01-18

GenBank Submission: FJ636196

> BS08555.complete
GAAGTTATCAGTCGACATGACCACCCATTCCGTTGTTGACCTGCGCTCGG
ACACCGTCAGCCAGCCGACGGACAAGATGCGGGCCCGGATGGCCACCGCC
GTGGTCGGGGATGACGTTTATGGCGAGGATCCCACCGTCAACGAACTGGA
GGCGCGAACAGCGGCCATTTTCGGCAAGGAGGCGGGCCTCTTTGTGCCCA
GCGGCACCATGGGAAATCTACTGGCAATTATGGTTCACTGCCATCGTCGT
GGCACGGAGGCCCTGGTCGGCGATTTATCGCACATCTTTCTGTACGAACA
AGGTGGCGCCTCGCATTTGGCCGGAGTCCAATTAGCCACTCTGAAGAACG
AGCAGGATGGCACCTTTAGTCTGCAGGATCTGCGCCGCAGGATACGCCAC
GAAGACTGCCACGAGCCCATCACCTCGCTGGTGGTGGTGGAGCAGACCCA
CAATATCTGCGGTGGCAAAGTGGTGCCTCTGGCCTTCTTGGATGAGCTAG
CTGCTCTGGTCCGACAGCCGGGCGTGGGCACTGGGAACGCCCGTATCGCT
CTACACATGGACGGAGCGAGGGTCTTTAATGCGGCCACCGCCTTGGGCGT
GGGAGTGGAGCGCATCTGCCGCGATTTCGATTCGGTATCTATCTGCCTCA
GCAAGGGCTTATCGGCTCCCGTGGGATCCGTGTTAGTCGGCTCCAAGGCC
TTCATTTCGGAAGCCCATCGACTGCGCAAAGCTTTGGGAGGCGGAATGCG
GCAGGTGGGAGTGTTAGCAGCAGCTGGACTGGTAGCTTTGGATGAAGTGG
TACCACTTCTGAGCAAAGATCACGAGCGGACCAATAAAATTGCCAACGCT
ATATATGAACTGAAAAGTCCCAACATTACCGTACACGTGTCGTCTGTCCA
GAGCAATATCCTTCTGGTAGAGATAACCCAACCCAAACTGACGGCCAGTG
AGTTCTCCACCCGGTTGAGCATCGTTGATGCTGGTGAAGTGGAAGCCGGA
GTGAAGGACAAAAACGGAGCCGGAATCGTGGTGAAGGCTAGTGCCCGGGA
TTGGGCATTTGCGAGACTTGTGCTCTACCATCAGGTGGACGATGAGCAAG
TGGACCTGGCCATCAGGAAGCTGAAGTACGTCATCGGCCAGTACGACAAG
CAATTTCCCAGGACCTAGAAGCTTTCTAGACCAT

BS08555.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:11:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG10184-RA 1152 CG10184-PA 1..1152 17..1168 5760 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:11:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG10184-RA 1330 CG10184-RA 87..1239 17..1169 5765 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:11:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23603354..23603764 711..301 2055 100 Minus
3R 32079331 3R 23602598..23602919 1169..848 1610 100 Minus
3R 32079331 3R 23604814..23605024 227..17 1055 100 Minus
3R 32079331 3R 23602977..23603113 848..712 685 100 Minus
3R 32079331 3R 23603825..23603902 305..228 390 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:11:23 has no hits.

BS08555.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:02:45 Download gff for BS08555.complete
Subject Subject Range Query Range Percent Splice Strand
CG10184-RA 1..1152 17..1168 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:40:34 Download gff for BS08555.complete
Subject Subject Range Query Range Percent Splice Strand
CG10184-RA 79..1239 17..1178 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:36:03 Download gff for BS08555.complete
Subject Subject Range Query Range Percent Splice Strand
CG10184-RA 87..1238 17..1168 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:02:45 Download gff for BS08555.complete
Subject Subject Range Query Range Percent Splice Strand
CG10184-RA 79..1239 17..1178 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:05:25 Download gff for BS08555.complete
Subject Subject Range Query Range Percent Splice Strand
CG10184-RA 87..1238 17..1168 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:05:25 Download gff for BS08555.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23604814..23605024 17..227 100   Minus
3R 23602599..23602918 849..1168 100 <- Minus
3R 23602977..23603113 712..848 100 <- Minus
3R 23603354..23603762 303..711 100 <- Minus
3R 23603828..23603902 228..302 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:36:03 Download gff for BS08555.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19430536..19430746 17..227 100   Minus
arm_3R 19428321..19428640 849..1168 100 <- Minus
arm_3R 19428699..19428835 712..848 100 <- Minus
arm_3R 19429076..19429484 303..711 100 <- Minus
arm_3R 19429550..19429624 228..302 100 <- Minus

BS08555.pep Sequence

Translation from 16 to 1167

> BS08555.pep
MTTHSVVDLRSDTVSQPTDKMRARMATAVVGDDVYGEDPTVNELEARTAA
IFGKEAGLFVPSGTMGNLLAIMVHCHRRGTEALVGDLSHIFLYEQGGASH
LAGVQLATLKNEQDGTFSLQDLRRRIRHEDCHEPITSLVVVEQTHNICGG
KVVPLAFLDELAALVRQPGVGTGNARIALHMDGARVFNAATALGVGVERI
CRDFDSVSICLSKGLSAPVGSVLVGSKAFISEAHRLRKALGGGMRQVGVL
AAAGLVALDEVVPLLSKDHERTNKIANAIYELKSPNITVHVSSVQSNILL
VEITQPKLTASEFSTRLSIVDAGEVEAGVKDKNGAGIVVKASARDWAFAR
LVLYHQVDDEQVDLAIRKLKYVIGQYDKQFPRT*

BS08555.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:22:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG10184-PA 383 CG10184-PA 1..383 1..383 1927 100 Plus