Clone Sequence Records
BS08558.3prime Sequence
630 bp (629 high quality bases) assembled on 2006-01-10
> BS08558.3prime
ATGGTCTAGAAAGCTTCTAGGTGAAGCTGCAGCAGGAGTTAGTCTTTTTC
GCCGTCTTGTAGAACGCCTTGCTCTGCAGCGACAATTTCTCCGACTTGCT
GACCATGTCGTCCAGCTTCTCGCCCCGCTCCAGCACCGCCTCGATGGTAT
TCTTCAGTATGATCTTCGTTTCGTCCAGGTCGTTTTGCATTTTCGTCAGC
GGATCTGCTTCGACGGGATTTTGATAGCGTGCTAGAAACGCTGGCAGCAA
GTCAAATGAGATAGTGGCCTCCGTGCCATTGGGCCACTGATCGGGCGACA
CCTTGGCCGTAAAGTCATCCAGAATCTTTGTGATAAGCGTGTGCGCCACG
CGATGCGGATACTCATGATCGGCGATCAGTACACCGGCCAGATTGTCCGC
CCGCACATAGACATGACACATGTAGGCATCCTGTTTCACCGATTGCCGCA
GGGCCGGCTGTGTGCGCTCCACAATCGTCTTCGAAGCGAAAGTCATGAAC
TCGTTGACGGTGCCACGTTGGAAAAAGGAGAAGGACTGCAGGTCCGAGGC
GGTCTTCAGGAGACGCGCCTCGCTGGCGCCCTTGTGAAAGATGCTCAACG
CGAATAGTTTGACCATGTCGACTGATAACT
BS08558.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:09:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1515-PA | 600 | l(1)G0155-RA | 1..600 | 616..17 | 2975 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:48:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ykt6-RA | 1469 | CG1515-RA | 268..868 | 616..16 | 2990 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:48:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 7920890..7921365 | 491..16 | 2365 | 99.8 | Minus |
| X | 23542271 | X | 7920676..7920800 | 616..492 | 625 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 23:48:28 has no hits.
BS08558.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:43:53 Download gff for
BS08558.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1515-PA | 1..600 | 17..616 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:44:27 Download gff for
BS08558.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1515-PA | 1..600 | 17..616 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:37:38 Download gff for
BS08558.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ykt6-RA | 260..868 | 16..624 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:56:29 Download gff for
BS08558.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ykt6-RA | 260..868 | 16..624 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:56:29 Download gff for
BS08558.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 7920668..7920800 | 492..624 | 97 | -> | Minus |
| X | 7920890..7921365 | 16..491 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:37:38 Download gff for
BS08558.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 7814701..7814833 | 492..624 | 97 | -> | Minus |
| arm_X | 7814923..7815398 | 16..491 | 99 | | Minus |
BS08558.5prime Sequence
630 bp (629 high quality bases) assembled on 2006-01-10
> BS08558.5prime
GAAGTTATCAGTCGACATGGTCAAACTATTCGCGTTGAGCATCTTTCACA
AGGGCGCCAGCGAGGCGCGTCTCCTGAAGACCGCCTCGGACCTGCAGTCC
TTCTCCTTTTTCCAACGTGGCACCGTCAACGAGTTCATGACTTTCGCTTC
GAAGACGATTGTGGAGCGCACACAGCCGGCCCTGCGGCAATCGGTGAAAC
AGGATGCCTACATGTGTCATGTCTATGTGCGGGCGGACAATCTGGCCGGT
GTACTGATCGCCGATCATGAGTATCCGCATCGCGTGGCGCACACGCTTAT
CACAAAGATTCTGGATGACTTTACGGCCAAGGTGTCGGCCGATCAGTGGC
CCAATGGCACGGAGGCCACTATCTCATTTGACTTGCTGCCAGCGTTTCTA
GCACGCTATCAAAATCCCGTCGAAGCAGATCCGCTGACGAAAATGCAAAA
CGACCTGGACGAAACGAAGATCATACTGAAGAATACCATCGAGGCGGTGC
TGGAGCGGGGCGAGAAGCTGGACGACATGGTCAGCAAGTCGGAGAAATTG
TCGCTGCAGAGCAAGGCGTTCTACAAGACGGCGAAAAAGACTAACTCCTG
CTGCAGCTTCACCTAGAAGCTTTCTAGACC
BS08558.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:09:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1515-PA | 600 | l(1)G0155-RA | 1..600 | 17..616 | 3000 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 01:22:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ykt6-RA | 1469 | CG1515-RA | 268..868 | 17..617 | 3005 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 01:22:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 7920890..7921365 | 142..617 | 2380 | 100 | Plus |
| X | 23542271 | X | 7920676..7920800 | 17..141 | 625 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 01:22:04 has no hits.
BS08558.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:43:54 Download gff for
BS08558.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1515-PA | 1..600 | 17..616 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:44:28 Download gff for
BS08558.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1515-PA | 1..600 | 17..616 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:40:16 Download gff for
BS08558.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ykt6-RA | 260..868 | 9..617 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:28:56 Download gff for
BS08558.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ykt6-RA | 260..868 | 9..617 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:28:56 Download gff for
BS08558.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 7920668..7920800 | 9..141 | 97 | -> | Plus |
| X | 7920890..7921365 | 142..617 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:40:16 Download gff for
BS08558.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 7814701..7814833 | 9..141 | 97 | -> | Plus |
| arm_X | 7814923..7815398 | 142..617 | 100 | | Plus |
BS08558.complete Sequence
632 bp assembled on 2007-10-17
GenBank Submission: FJ636197
> BS08558.complete
GAAGTTATCAGTCGACATGGTCAAACTATTCGCGTTGAGCATCTTTCACA
AGGGCGCCAGCGAGGCGCGTCTCCTGAAGACCGCCTCGGACCTGCAGTCC
TTCTCCTTTTTCCAACGTGGCACCGTCAACGAGTTCATGACTTTCGCTTC
GAAGACGATTGTGGAGCGCACACAGCCGGCCCTGCGGCAATCGGTGAAAC
AGGATGCCTACATGTGTCATGTCTATGTGCGGGCGGACAATCTGGCCGGT
GTACTGATCGCCGATCATGAGTATCCGCATCGCGTGGCGCACACGCTTAT
CACAAAGATTCTGGATGACTTTACGGCCAAGGTGTCGGCCGATCAGTGGC
CCAATGGCACGGAGGCCACTATCTCATTTGACTTGCTGCCAGCGTTTCTA
GCACGCTATCAAAATCCCGTCGAAGCAGATCCGCTGACGAAAATGCAAAA
CGACCTGGACGAAACGAAGATCATACTGAAGAATACCATCGAGGCGGTGC
TGGAGCGGGGCGAGAAGCTGGACGACATGGTCAGCAAGTCGGAGAAATTG
TCGCTGCAGAGCAAGGCGTTCTACAAGACGGCGAAAAAGACTAACTCCTG
CTGCAGCTTCACCTAGAAGCTTTCTAGACCAT
BS08558.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:02:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ykt6-RA | 600 | CG1515-PA | 1..600 | 17..616 | 3000 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:02:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ykt6-RA | 1469 | CG1515-RA | 268..868 | 17..617 | 3005 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:02:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 7920890..7921365 | 142..617 | 2380 | 100 | Plus |
| X | 23542271 | X | 7920676..7920800 | 17..141 | 625 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 11:02:30 has no hits.
BS08558.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:09:28 Download gff for
BS08558.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)G0155-RA | 1..600 | 17..616 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:39:21 Download gff for
BS08558.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)G0155-RA | 208..816 | 9..617 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:04:56 Download gff for
BS08558.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ykt6-RA | 268..867 | 17..616 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:30:29 Download gff for
BS08558.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)G0155-RA | 216..815 | 17..616 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:37:19 Download gff for
BS08558.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ykt6-RA | 268..867 | 17..616 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:37:19 Download gff for
BS08558.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 7920676..7920800 | 17..141 | 100 | -> | Plus |
| X | 7920890..7921364 | 142..616 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:04:56 Download gff for
BS08558.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 7814709..7814833 | 17..141 | 100 | -> | Plus |
| arm_X | 7814923..7815397 | 142..616 | 100 | | Plus |
BS08558.pep Sequence
Translation from 16 to 615
> BS08558.pep
MVKLFALSIFHKGASEARLLKTASDLQSFSFFQRGTVNEFMTFASKTIVE
RTQPALRQSVKQDAYMCHVYVRADNLAGVLIADHEYPHRVAHTLITKILD
DFTAKVSADQWPNGTEATISFDLLPAFLARYQNPVEADPLTKMQNDLDET
KIILKNTIEAVLERGEKLDDMVSKSEKLSLQSKAFYKTAKKTNSCCSFT*
BS08558.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:38:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ykt6-PA | 199 | CG1515-PA | 1..199 | 1..199 | 1011 | 100 | Plus |
