Clone BS08562 Report

Search the DGRC for BS08562

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:85
Well:62
Vector:pDNR-Dual
Associated Gene/TranscriptArt3-RA
Protein status:BS08562.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08562.3prime Sequence

922 bp (780 high quality bases) assembled on 2006-01-10

> BS08562.3prime
ATGGTCTAGAAAGCTTTTAAACCACATTGTATTTGTGTTTCTTGCCAAAG
ACTTCTATGTCCACACTAAGTCCTCTGACATCCTCTTTATGTCTTCTTGA
CGTGATTTTCCCACAAATGACGTCTCCTTCCTTCACAACCTGCGGGTTCT
CGATGAAGAAAACCGTTTGCTTCCAATGGGTGGGCGTCGCAGATGGTGAT
GTGCTGAACATGACGGGGGAGGGTAGTTCAAACAATGTTTCAAAGTAACC
GACAAAGGCGGATAATCGTCCCGGCTTCGTGACCTTTAAGCTAAACTGGT
GAGTAAAGTTTGGATAGTTCATATCGACGGTCATTATGTCGAAGTTAGCT
ATCTGTTCGGGTTCCGTCAGCATGAACTCTGCATCCACCACCTGCATGAG
TGGCTCCTCTATTGATTGCTTTCGCAGATCGCTCATGTCGACCTCGTAAA
CGTTAGACCAGAATTCCACTTCATCGGCATAAAGCGTGTCGTCTCCATAG
CCCAAGAGACTGAGTGTACAGCGACTGGGCAGTATTATGCCATTGGGGTT
GAGGTGATTCTCGCGGGCGTAGATAATGCTGTCCAGCATTGATTCGTACA
AAAGAAAATAGCCCATCCATTCGGATATTATAATGTCGTATTTAGTCTCT
GGGAGATCTGTGTCCTCCAGCCGTCCCTTGATCAGTTCAACATTCTCAAC
CTTGTTCTTCCTGATGATATCCATGGCGGTGTACACAATGTCCGAGTTAT
CTATGCCGACAACGCGAGCTGCACCCGCTTTGGAGGCGAAGATGGATAGG
ATTCCCGTGCCGCATCCCACATCCCACACTGTCTTGCCCCGAACAACGGC
CTCGTTTTGGAGCAAAGACGCGCGATAGGTGCTGGTCCGCACTTTGTCGC
TGAGCATTTCATGGTGAATGCC

BS08562.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:09:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG6563-PA 1551 Art3-RA 646..1551 922..17 4480 99.7 Minus
CG6563-PB 1425 Art3-RB 520..1425 922..17 4480 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 14:26:05
Subject Length Description Subject Range Query Range Score Percent Strand
Art3-RB 1804 CG6563-RB 853..1758 922..17 4500 99.8 Minus
Art3-RA 1740 CG6563-RA 789..1694 922..17 4500 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 14:25:59
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15227651..15228556 17..922 4500 99.8 Plus
Blast to na_te.dros performed on 2015-02-08 14:26:02 has no hits.

BS08562.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:43:57 Download gff for BS08562.3prime
Subject Subject Range Query Range Percent Splice Strand
Art3-PB 520..1425 17..922 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:44:33 Download gff for BS08562.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6563-PB 520..1425 17..922 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:55:53 Download gff for BS08562.3prime
Subject Subject Range Query Range Percent Splice Strand
Art3-RA 789..1703 8..922 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:36:28 Download gff for BS08562.3prime
Subject Subject Range Query Range Percent Splice Strand
Art3-RA 789..1703 8..922 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:36:28 Download gff for BS08562.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 15227642..15228556 8..922 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:55:53 Download gff for BS08562.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11053364..11054278 8..922 99   Plus

BS08562.5prime Sequence

875 bp (788 high quality bases) assembled on 2006-01-10

> BS08562.5prime
GAAGTTATCAGTCGACATGAAAGACACCGAGGTCAACGACAACACCACAG
AGGAGGAGCCCGTGAAGGAGGCACCTGAGGTGCCGGCCAATTCCAGCTCC
GACGAAGATGAGTACGATGACATAGATGACGATGATGAGCCAATGGACGA
AGGCGATGAGCTAACCACTTGTCTGTTTTGCACCGAAACATCTGCAAACA
TCTCGGTGGCCATTGACCATCTTGACGCCCGGCATAAAGTGAATCTGTCC
CAGCTTCAGCGTAAATTCGAAATGGACCAGTATTCCTTTATCAAACTGAT
AAACTACATAAGAGCCAAAAAGATCAGTGCCGAGCAGTTATTGTCTGCGG
AACATCCGCTTTGGCAGGATGAGAAGTACCTCCAGCCCGGGGAGTATGAG
CCCTGGCTCTGCTATGACTACGAAGTCCTTAAAACAGACGGCGCTCCGAC
GCAGCCCTCGGTTCTGGAGCTACAACAGCGGATTGCTGAGCAGTCGCAAT
TGCTGCAGCAGGCCAACGAGGACATGGAACGCATGCGCAACGACTACAAG
GCGCTGCTGCAAAAGGTACATGCTGACGGCGAGCCCAAAGGTTCCGACCA
GAGCGTACCGCGTAACAACGTTTGTCTCGACAACGAATACTTCAAAAGCT
ACGCCCACTTTGGCATTCACCATGAAATGCTCAGCGACAAGGTGCGGACC
AGCACCTATCGCGCGTCTTTGCTCCAAAACGAGGCCGTTGTTCGGGGCAA
GACAGTGTTGGATGTGGGATGCGGCACGGGAATCCTATCCATCTTCGCCT
CCAAAGCGGGTGCAGCTCGCGTTGTCGGCATAGATAACTCGGACATTGTG
TACACCGCCATGGATATCATCAAGA

BS08562.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:09:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG6563-PA 1551 Art3-RA 1..856 17..872 4280 100 Plus
CG6563-PB 1425 Art3-RB 1..730 143..872 3650 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:02:49
Subject Length Description Subject Range Query Range Score Percent Strand
Art3-RA 1740 CG6563-RA 143..999 16..872 4285 100 Plus
Art3-RB 1804 CG6563-RB 229..1063 38..872 4175 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:02:44
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15228346..15229180 872..38 4175 100 Minus
Blast to na_te.dros performed on 2015-02-12 19:02:46 has no hits.

BS08562.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:43:58 Download gff for BS08562.5prime
Subject Subject Range Query Range Percent Splice Strand
Art3-PA 1..857 17..874 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:44:34 Download gff for BS08562.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6563-PA 1..857 17..874 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:27:48 Download gff for BS08562.5prime
Subject Subject Range Query Range Percent Splice Strand
Art3-RA 143..1000 16..874 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:29:07 Download gff for BS08562.5prime
Subject Subject Range Query Range Percent Splice Strand
Art3-RA 143..1000 16..874 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:29:07 Download gff for BS08562.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 15228344..15229179 39..874 99 <- Minus
3R 15229244..15229266 16..38 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:27:48 Download gff for BS08562.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11054066..11054901 39..874 99 <- Minus
arm_3R 11054966..11054988 16..38 100   Minus

BS08562.complete Sequence

1583 bp (1583 high quality bases) assembled on 2006-01-18

GenBank Submission: FJ636198

> BS08562.complete
GAAGTTATCAGTCGACATGAAAGACACCGAGGTCAACGACAACACCACAG
AGGAGGAGCCCGTGAAGGAGGCACCTGAGGTGCCGGCCAATTCCAGCTCC
GACGAAGATGAGTACGATGACATAGATGACGATGATGAGCCAATGGACGA
AGGCGATGAGCTAACCACTTGTCTGTTTTGCACCGAAACATCTGCAAACA
TCTCGGTGGCCATTGACCATCTTGACGCCCGGCATAAAGTGAATCTGTCC
CAGCTTCAGCGTAAATTCGAAATGGACCAGTATTCCTTTATCAAACTGAT
AAACTACATAAGAGCCAAAAAGATCAGTGCCGAGCAGTTATTGTCTGCGG
AACATCCGCTTTGGCAGGATGAGAAGTACCTCCAGCCCGGGGAGTATGAG
CCCTGGCTCTGCTATGACTACGAAGTCCTTAAAACAGACGGCGCTCCGAC
GCAGCCCTCGGTTCTGGAGCTACAACAGCGGATTGCTGAGCAGTCGCAAT
TGCTGCAGCAGGCCAACGAGGACATGGAACGCATGCGCAACGACTACAAG
GCGCTGCTGCAAAAGGTACATGCTGACGGCGAGCCCAAAGGTTCCGACCA
GAGCGTACCGCGTAACAACGTTTGTCTCGACAACGAATACTTCAAAAGCT
ACGCCCACTTTGGCATTCACCATGAAATGCTCAGCGACAAGGTGCGGACC
AGCACCTATCGCGCGTCTTTGCTCCAAAACGAGGCCGTTGTTCGGGGCAA
GACAGTGTTGGATGTGGGATGCGGCACGGGAATCCTATCCATCTTCGCCT
CCAAAGCGGGTGCAGCTCGCGTTGTCGGCATAGATAACTCGGACATTGTG
TACACCGCCATGGATATCATCAGGAAGAACAAGGTTGAGAATGTTGAACT
GATCAAGGGACGGCTGGAGGACACAGATCTCCCAGAGACTAAATACGACA
TTATAATATCCGAATGGATGGGCTATTTTCTTTTGTACGAATCAATGCTG
GACAGCATTATCTACGCCCGCGAGAATCACCTCAACCCCAATGGCATAAT
ACTGCCCAGTCGCTGTACACTCAGTCTCTTGGGCTATGGAGACGACACGC
TTTATGCCGATGAAGTGGAATTCTGGTCTAACGTTTACGAGGTCGACATG
AGCGATCTGCGAAAGCAATCAATAGAGGAGCCACTCATGCAGGTGGTGGA
TGCAGAGTTCATGCTGACGGAACCCGAACAGATAGCTAACTTCGACATAA
TGACCGTCGATATGAACTATCCAAACTTTACTCACCAGTTTAGCTTAAAG
GTCACGAAGCCGGGACGATTATCCGCCTTTGTCGGTTACTTTGAAACATT
GTTTGAACTACCCTCCCCCGTCATGTTCAGCACATCACCATCTGCGACGC
CCACCCATTGGAAGCAAACGGTTTTCTTCATCGAGAACCCGCAGGTTGTG
AAGGAAGGAGACGTCATTTGTGGGAAAATCACGTCAAGAAGACATAAAGA
GGATGTCAGAGGACTTAGTGTGGACATAGAAGTCTTTGGCAAGAAACACA
AATACAATGTGGTTTAAAAGCTTTCTAGACCAT

BS08562.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:31:19
Subject Length Description Subject Range Query Range Score Percent Strand
Art3-RA 1551 CG6563-PA 1..1551 17..1567 7755 100 Plus
Art3-RB 1425 CG6563-PB 1..1425 143..1567 7125 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:31:20
Subject Length Description Subject Range Query Range Score Percent Strand
Art3-RA 1740 CG6563-RA 143..1694 16..1567 7760 100 Plus
Art3-RB 1804 CG6563-RB 229..1758 38..1567 7650 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:31:18
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15227651..15229180 1567..38 7650 100 Minus
Blast to na_te.dros performed on 2014-11-27 15:31:18 has no hits.

BS08562.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:02:46 Download gff for BS08562.complete
Subject Subject Range Query Range Percent Splice Strand
Art3-RA 1..1551 17..1567 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:40:36 Download gff for BS08562.complete
Subject Subject Range Query Range Percent Splice Strand
Art3-RA 174..1734 16..1576 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:42:26 Download gff for BS08562.complete
Subject Subject Range Query Range Percent Splice Strand
Art3-RA 144..1692 17..1565 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:02:46 Download gff for BS08562.complete
Subject Subject Range Query Range Percent Splice Strand
Art3-RA 174..1734 16..1576 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:09:55 Download gff for BS08562.complete
Subject Subject Range Query Range Percent Splice Strand
Art3-RA 144..1692 17..1565 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:09:55 Download gff for BS08562.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15227653..15229179 39..1565 100 <- Minus
3R 15229244..15229265 17..38 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:42:26 Download gff for BS08562.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11053375..11054901 39..1565 100 <- Minus
arm_3R 11054966..11054987 17..38 100   Minus

BS08562.pep Sequence

Translation from 16 to 1566

> BS08562.pep
MKDTEVNDNTTEEEPVKEAPEVPANSSSDEDEYDDIDDDDEPMDEGDELT
TCLFCTETSANISVAIDHLDARHKVNLSQLQRKFEMDQYSFIKLINYIRA
KKISAEQLLSAEHPLWQDEKYLQPGEYEPWLCYDYEVLKTDGAPTQPSVL
ELQQRIAEQSQLLQQANEDMERMRNDYKALLQKVHADGEPKGSDQSVPRN
NVCLDNEYFKSYAHFGIHHEMLSDKVRTSTYRASLLQNEAVVRGKTVLDV
GCGTGILSIFASKAGAARVVGIDNSDIVYTAMDIIRKNKVENVELIKGRL
EDTDLPETKYDIIISEWMGYFLLYESMLDSIIYARENHLNPNGIILPSRC
TLSLLGYGDDTLYADEVEFWSNVYEVDMSDLRKQSIEEPLMQVVDAEFML
TEPEQIANFDIMTVDMNYPNFTHQFSLKVTKPGRLSAFVGYFETLFELPS
PVMFSTSPSATPTHWKQTVFFIENPQVVKEGDVICGKITSRRHKEDVRGL
SVDIEVFGKKHKYNVV*

BS08562.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:22:35
Subject Length Description Subject Range Query Range Score Percent Strand
Art3-PA 516 CG6563-PA 1..516 1..516 2698 100 Plus
Art3-PB 474 CG6563-PB 1..474 43..516 2474 100 Plus
Art1-PA 376 CG6554-PA 31..358 182..506 636 40.4 Plus
Art6-PA 341 CG9927-PA 16..322 205..506 521 38.5 Plus
Art2-PB 355 CG3675-PB 30..331 205..506 467 35.2 Plus