Clone Sequence Records
BS08562.3prime Sequence
922 bp (780 high quality bases) assembled on 2006-01-10
> BS08562.3prime
ATGGTCTAGAAAGCTTTTAAACCACATTGTATTTGTGTTTCTTGCCAAAG
ACTTCTATGTCCACACTAAGTCCTCTGACATCCTCTTTATGTCTTCTTGA
CGTGATTTTCCCACAAATGACGTCTCCTTCCTTCACAACCTGCGGGTTCT
CGATGAAGAAAACCGTTTGCTTCCAATGGGTGGGCGTCGCAGATGGTGAT
GTGCTGAACATGACGGGGGAGGGTAGTTCAAACAATGTTTCAAAGTAACC
GACAAAGGCGGATAATCGTCCCGGCTTCGTGACCTTTAAGCTAAACTGGT
GAGTAAAGTTTGGATAGTTCATATCGACGGTCATTATGTCGAAGTTAGCT
ATCTGTTCGGGTTCCGTCAGCATGAACTCTGCATCCACCACCTGCATGAG
TGGCTCCTCTATTGATTGCTTTCGCAGATCGCTCATGTCGACCTCGTAAA
CGTTAGACCAGAATTCCACTTCATCGGCATAAAGCGTGTCGTCTCCATAG
CCCAAGAGACTGAGTGTACAGCGACTGGGCAGTATTATGCCATTGGGGTT
GAGGTGATTCTCGCGGGCGTAGATAATGCTGTCCAGCATTGATTCGTACA
AAAGAAAATAGCCCATCCATTCGGATATTATAATGTCGTATTTAGTCTCT
GGGAGATCTGTGTCCTCCAGCCGTCCCTTGATCAGTTCAACATTCTCAAC
CTTGTTCTTCCTGATGATATCCATGGCGGTGTACACAATGTCCGAGTTAT
CTATGCCGACAACGCGAGCTGCACCCGCTTTGGAGGCGAAGATGGATAGG
ATTCCCGTGCCGCATCCCACATCCCACACTGTCTTGCCCCGAACAACGGC
CTCGTTTTGGAGCAAAGACGCGCGATAGGTGCTGGTCCGCACTTTGTCGC
TGAGCATTTCATGGTGAATGCC
BS08562.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:09:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6563-PA | 1551 | Art3-RA | 646..1551 | 922..17 | 4480 | 99.7 | Minus |
CG6563-PB | 1425 | Art3-RB | 520..1425 | 922..17 | 4480 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 14:26:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Art3-RB | 1804 | CG6563-RB | 853..1758 | 922..17 | 4500 | 99.8 | Minus |
Art3-RA | 1740 | CG6563-RA | 789..1694 | 922..17 | 4500 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 14:25:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15227651..15228556 | 17..922 | 4500 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-08 14:26:02 has no hits.
BS08562.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:43:57 Download gff for
BS08562.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Art3-PB | 520..1425 | 17..922 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:44:33 Download gff for
BS08562.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6563-PB | 520..1425 | 17..922 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:55:53 Download gff for
BS08562.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Art3-RA | 789..1703 | 8..922 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:36:28 Download gff for
BS08562.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Art3-RA | 789..1703 | 8..922 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:36:28 Download gff for
BS08562.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15227642..15228556 | 8..922 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:55:53 Download gff for
BS08562.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11053364..11054278 | 8..922 | 99 | | Plus |
BS08562.5prime Sequence
875 bp (788 high quality bases) assembled on 2006-01-10
> BS08562.5prime
GAAGTTATCAGTCGACATGAAAGACACCGAGGTCAACGACAACACCACAG
AGGAGGAGCCCGTGAAGGAGGCACCTGAGGTGCCGGCCAATTCCAGCTCC
GACGAAGATGAGTACGATGACATAGATGACGATGATGAGCCAATGGACGA
AGGCGATGAGCTAACCACTTGTCTGTTTTGCACCGAAACATCTGCAAACA
TCTCGGTGGCCATTGACCATCTTGACGCCCGGCATAAAGTGAATCTGTCC
CAGCTTCAGCGTAAATTCGAAATGGACCAGTATTCCTTTATCAAACTGAT
AAACTACATAAGAGCCAAAAAGATCAGTGCCGAGCAGTTATTGTCTGCGG
AACATCCGCTTTGGCAGGATGAGAAGTACCTCCAGCCCGGGGAGTATGAG
CCCTGGCTCTGCTATGACTACGAAGTCCTTAAAACAGACGGCGCTCCGAC
GCAGCCCTCGGTTCTGGAGCTACAACAGCGGATTGCTGAGCAGTCGCAAT
TGCTGCAGCAGGCCAACGAGGACATGGAACGCATGCGCAACGACTACAAG
GCGCTGCTGCAAAAGGTACATGCTGACGGCGAGCCCAAAGGTTCCGACCA
GAGCGTACCGCGTAACAACGTTTGTCTCGACAACGAATACTTCAAAAGCT
ACGCCCACTTTGGCATTCACCATGAAATGCTCAGCGACAAGGTGCGGACC
AGCACCTATCGCGCGTCTTTGCTCCAAAACGAGGCCGTTGTTCGGGGCAA
GACAGTGTTGGATGTGGGATGCGGCACGGGAATCCTATCCATCTTCGCCT
CCAAAGCGGGTGCAGCTCGCGTTGTCGGCATAGATAACTCGGACATTGTG
TACACCGCCATGGATATCATCAAGA
BS08562.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:09:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6563-PA | 1551 | Art3-RA | 1..856 | 17..872 | 4280 | 100 | Plus |
CG6563-PB | 1425 | Art3-RB | 1..730 | 143..872 | 3650 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:02:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Art3-RA | 1740 | CG6563-RA | 143..999 | 16..872 | 4285 | 100 | Plus |
Art3-RB | 1804 | CG6563-RB | 229..1063 | 38..872 | 4175 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:02:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15228346..15229180 | 872..38 | 4175 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 19:02:46 has no hits.
BS08562.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:43:58 Download gff for
BS08562.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Art3-PA | 1..857 | 17..874 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:44:34 Download gff for
BS08562.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6563-PA | 1..857 | 17..874 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:27:48 Download gff for
BS08562.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Art3-RA | 143..1000 | 16..874 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:29:07 Download gff for
BS08562.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Art3-RA | 143..1000 | 16..874 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:29:07 Download gff for
BS08562.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15228344..15229179 | 39..874 | 99 | <- | Minus |
3R | 15229244..15229266 | 16..38 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:27:48 Download gff for
BS08562.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11054066..11054901 | 39..874 | 99 | <- | Minus |
arm_3R | 11054966..11054988 | 16..38 | 100 | | Minus |
BS08562.complete Sequence
1583 bp (1583 high quality bases) assembled on 2006-01-18
GenBank Submission: FJ636198
> BS08562.complete
GAAGTTATCAGTCGACATGAAAGACACCGAGGTCAACGACAACACCACAG
AGGAGGAGCCCGTGAAGGAGGCACCTGAGGTGCCGGCCAATTCCAGCTCC
GACGAAGATGAGTACGATGACATAGATGACGATGATGAGCCAATGGACGA
AGGCGATGAGCTAACCACTTGTCTGTTTTGCACCGAAACATCTGCAAACA
TCTCGGTGGCCATTGACCATCTTGACGCCCGGCATAAAGTGAATCTGTCC
CAGCTTCAGCGTAAATTCGAAATGGACCAGTATTCCTTTATCAAACTGAT
AAACTACATAAGAGCCAAAAAGATCAGTGCCGAGCAGTTATTGTCTGCGG
AACATCCGCTTTGGCAGGATGAGAAGTACCTCCAGCCCGGGGAGTATGAG
CCCTGGCTCTGCTATGACTACGAAGTCCTTAAAACAGACGGCGCTCCGAC
GCAGCCCTCGGTTCTGGAGCTACAACAGCGGATTGCTGAGCAGTCGCAAT
TGCTGCAGCAGGCCAACGAGGACATGGAACGCATGCGCAACGACTACAAG
GCGCTGCTGCAAAAGGTACATGCTGACGGCGAGCCCAAAGGTTCCGACCA
GAGCGTACCGCGTAACAACGTTTGTCTCGACAACGAATACTTCAAAAGCT
ACGCCCACTTTGGCATTCACCATGAAATGCTCAGCGACAAGGTGCGGACC
AGCACCTATCGCGCGTCTTTGCTCCAAAACGAGGCCGTTGTTCGGGGCAA
GACAGTGTTGGATGTGGGATGCGGCACGGGAATCCTATCCATCTTCGCCT
CCAAAGCGGGTGCAGCTCGCGTTGTCGGCATAGATAACTCGGACATTGTG
TACACCGCCATGGATATCATCAGGAAGAACAAGGTTGAGAATGTTGAACT
GATCAAGGGACGGCTGGAGGACACAGATCTCCCAGAGACTAAATACGACA
TTATAATATCCGAATGGATGGGCTATTTTCTTTTGTACGAATCAATGCTG
GACAGCATTATCTACGCCCGCGAGAATCACCTCAACCCCAATGGCATAAT
ACTGCCCAGTCGCTGTACACTCAGTCTCTTGGGCTATGGAGACGACACGC
TTTATGCCGATGAAGTGGAATTCTGGTCTAACGTTTACGAGGTCGACATG
AGCGATCTGCGAAAGCAATCAATAGAGGAGCCACTCATGCAGGTGGTGGA
TGCAGAGTTCATGCTGACGGAACCCGAACAGATAGCTAACTTCGACATAA
TGACCGTCGATATGAACTATCCAAACTTTACTCACCAGTTTAGCTTAAAG
GTCACGAAGCCGGGACGATTATCCGCCTTTGTCGGTTACTTTGAAACATT
GTTTGAACTACCCTCCCCCGTCATGTTCAGCACATCACCATCTGCGACGC
CCACCCATTGGAAGCAAACGGTTTTCTTCATCGAGAACCCGCAGGTTGTG
AAGGAAGGAGACGTCATTTGTGGGAAAATCACGTCAAGAAGACATAAAGA
GGATGTCAGAGGACTTAGTGTGGACATAGAAGTCTTTGGCAAGAAACACA
AATACAATGTGGTTTAAAAGCTTTCTAGACCAT
BS08562.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:31:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Art3-RA | 1551 | CG6563-PA | 1..1551 | 17..1567 | 7755 | 100 | Plus |
Art3-RB | 1425 | CG6563-PB | 1..1425 | 143..1567 | 7125 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:31:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Art3-RA | 1740 | CG6563-RA | 143..1694 | 16..1567 | 7760 | 100 | Plus |
Art3-RB | 1804 | CG6563-RB | 229..1758 | 38..1567 | 7650 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:31:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15227651..15229180 | 1567..38 | 7650 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:31:18 has no hits.
BS08562.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:02:46 Download gff for
BS08562.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Art3-RA | 1..1551 | 17..1567 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:40:36 Download gff for
BS08562.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Art3-RA | 174..1734 | 16..1576 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:42:26 Download gff for
BS08562.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Art3-RA | 144..1692 | 17..1565 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:02:46 Download gff for
BS08562.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Art3-RA | 174..1734 | 16..1576 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:09:55 Download gff for
BS08562.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Art3-RA | 144..1692 | 17..1565 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:09:55 Download gff for
BS08562.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15227653..15229179 | 39..1565 | 100 | <- | Minus |
3R | 15229244..15229265 | 17..38 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:42:26 Download gff for
BS08562.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11053375..11054901 | 39..1565 | 100 | <- | Minus |
arm_3R | 11054966..11054987 | 17..38 | 100 | | Minus |
BS08562.pep Sequence
Translation from 16 to 1566
> BS08562.pep
MKDTEVNDNTTEEEPVKEAPEVPANSSSDEDEYDDIDDDDEPMDEGDELT
TCLFCTETSANISVAIDHLDARHKVNLSQLQRKFEMDQYSFIKLINYIRA
KKISAEQLLSAEHPLWQDEKYLQPGEYEPWLCYDYEVLKTDGAPTQPSVL
ELQQRIAEQSQLLQQANEDMERMRNDYKALLQKVHADGEPKGSDQSVPRN
NVCLDNEYFKSYAHFGIHHEMLSDKVRTSTYRASLLQNEAVVRGKTVLDV
GCGTGILSIFASKAGAARVVGIDNSDIVYTAMDIIRKNKVENVELIKGRL
EDTDLPETKYDIIISEWMGYFLLYESMLDSIIYARENHLNPNGIILPSRC
TLSLLGYGDDTLYADEVEFWSNVYEVDMSDLRKQSIEEPLMQVVDAEFML
TEPEQIANFDIMTVDMNYPNFTHQFSLKVTKPGRLSAFVGYFETLFELPS
PVMFSTSPSATPTHWKQTVFFIENPQVVKEGDVICGKITSRRHKEDVRGL
SVDIEVFGKKHKYNVV*
BS08562.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:22:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Art3-PA | 516 | CG6563-PA | 1..516 | 1..516 | 2698 | 100 | Plus |
Art3-PB | 474 | CG6563-PB | 1..474 | 43..516 | 2474 | 100 | Plus |
Art1-PA | 376 | CG6554-PA | 31..358 | 182..506 | 636 | 40.4 | Plus |
Art6-PA | 341 | CG9927-PA | 16..322 | 205..506 | 521 | 38.5 | Plus |
Art2-PB | 355 | CG3675-PB | 30..331 | 205..506 | 467 | 35.2 | Plus |