Clone BS08565 Report

Search the DGRC for BS08565

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:85
Well:65
Vector:pDNR-Dual
Associated Gene/TranscriptDiap2-RA
Protein status:BS08565.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08565.3prime Sequence

844 bp (811 high quality bases) assembled on 2006-01-10

> BS08565.3prime
ATGGTCTAGAAAGCTTTCACGAAAGGAACGTGCGCACGAATCCCTTGATG
TCTGCGCGGCACATGGGACAATTGGCTACACTGGGGGCGCACTGATTGCA
GGTGGCCAAGTGGCCACAGGGCAGGAACACTACGCCAACCTCCTCGTCCA
AGCATACCTTGCATAAGCGTGCATCCTTTAGCTGGCGGTTTTCCTCCTCC
AGCGATAGGTTTCCGTTCGGCGTGGCCACCGACATCTTTTGTATTTCGTC
TGTGATTTTCGATATATTCGCCACTGCTTCAGCTGCCTGTGGTTTGGCTG
GGATGGAATCGGCCACCGGTATTGGCACAGATGCTGCCTTGCTGGTGGTG
GCCTGACATGGTTCAATAAAAGGAGCACTTGGCTCCGGCGGCTCGCGCAC
CTCCAGTGCAGCTCCTGCGCCCGCATCGTCAAAGATGTCATGCAATAGTT
CGTCCAACGTAGAGAAAGCGCAGCCGGAACTCAAGAGCTTGCGCTGGATG
GCATTGCGCACAACTCCTCCATCGATACCCAAGGCTAGGGCCTCCTTGGC
CGGAGCTTCATCCATCAGTACGTCTGCTTGGAGCGTTGGAGCCGGAGCAG
TTGCTGGCTGGGAACTGGCGTTGGCAGCTGTTGTCGCGAGCACTTCGCTT
ACATAGGCTGGACCCTTGGCCAGCAAAACGAACTGACACTTTGGCGACCA
CTTGGCGTGTTCGAACCACGGCTCGTCCTCCTTCTGCCAGGAGCGCAATC
CAATGTTGCAGTGGAAACAGCGCACCTGGTCGCCTATTTTCTGATAATAT
AGGCCAGCCTGCGCCCAAGCCGAAGCGGGCTGAATATTGNAAAT

BS08565.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:09:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG8293-PA 1497 Iap2-RA 670..1497 844..17 4096 99.7 Minus
CG8293-PB 1497 Iap2-RB 670..1497 844..17 4096 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:30:09
Subject Length Description Subject Range Query Range Score Percent Strand
Diap2-RB 1997 CG8293-RB 708..1536 844..16 4119 99.8 Minus
Diap2-RA 2106 CG8293-RA 817..1645 844..16 4119 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 09:30:00
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15932784..15933522 106..844 3669 99.7 Plus
2R 25286936 2R 15932631..15932721 16..106 455 100 Plus
Blast to na_te.dros performed on 2015-02-03 09:30:04 has no hits.

BS08565.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:44:01 Download gff for BS08565.3prime
Subject Subject Range Query Range Percent Splice Strand
Iap2-PB 670..1497 17..844 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:44:39 Download gff for BS08565.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8293-PB 670..1497 17..844 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:47:02 Download gff for BS08565.3prime
Subject Subject Range Query Range Percent Splice Strand
Iap2-RA 817..1645 16..844 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 10:00:59 Download gff for BS08565.3prime
Subject Subject Range Query Range Percent Splice Strand
Diap2-RA 817..1645 16..844 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 10:00:59 Download gff for BS08565.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 15932631..15932720 16..105 100 <- Plus
2R 15932784..15933522 106..844 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:47:02 Download gff for BS08565.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11820136..11820225 16..105 100 <- Plus
arm_2R 11820289..11821027 106..844 99   Plus

BS08565.5prime Sequence

810 bp (807 high quality bases) assembled on 2006-01-10

> BS08565.5prime
GAAGTTATCAGTCGACATGACGGAGCTGGGCATGGAGCTGGAGAGCGTTC
GCCTGGCGACATTTGGGGAATGGCCCCTGAATGCCCCAGTTTCCGCGGAG
GATCTGGTCGCCAATGGTTTCTTTGCCACGGGAAACTGGCTGGAGGCCGA
GTGCCATTTCTGCCACGTGCGCATCGACCGCTGGGAATACGGCGATCAAG
TGGCGGAGCGCCATCGCCGCTCCTCGCCCATCTGCTCCATGGTTCTGGCT
CCCAATCACTGCGGCAATGTTCCCAGGAGCCAGGAGAGCGACAACGAGGG
AAACAGCGTAGTGGACAGCCCGGAGTCCTGCTCTTGTCCCGATCTCTTGT
TGGAGGCCAATCGCTTGGTAACTTTCAAGGACTGGCCGAATCCCAACATC
ACGCCGCAGGCTCTGGCAAAGGCAGGTTTCTACTACCTGAACCGTCTGGA
TCACGTGAAGTGTGTTTGGTGCAACGGAGTGATTGCCAAGTGGGAGAAGA
ACGACAATGCCTTTGAAGAGCACAAGCGCTTTTTTCCCCAATGTCCTCGT
GTGCAAATGGGCCCCCTTATAGAGTTTGCCACCGGGAAGAACCTGGATGA
GCTGGGCATCCAGCCCACCACTCTGCCACTGCGTCCCAAGTACGCCTGCG
TGGACGCCAGATTGAGAACCTTCACCGATTGGCCCATTTCCAATATTCAG
CCCGCTTCGGCTTTGGCGCAGGCTGGCCTATATTATCAGAAAATAGGCGA
CCAGGTGCGCTGTTTCCACTGCAACATTGGATTGCGCTCCTGGCAGAAGG
AGGACGAGCC

BS08565.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:09:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG8293-PA 1497 Iap2-RA 1..794 17..810 3970 100 Plus
CG8293-PB 1497 Iap2-RB 1..794 17..810 3970 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:01:51
Subject Length Description Subject Range Query Range Score Percent Strand
Diap2-RB 1997 CG8293-RB 39..832 17..810 3970 100 Plus
Diap2-RA 2106 CG8293-RA 148..941 17..810 3970 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:01:49
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15933398..15933820 810..388 2115 100 Minus
2R 25286936 2R 15934199..15934570 388..17 1860 100 Minus
Blast to na_te.dros performed on 2015-02-10 20:01:50 has no hits.

BS08565.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:44:02 Download gff for BS08565.5prime
Subject Subject Range Query Range Percent Splice Strand
Iap2-PB 1..794 17..810 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:44:41 Download gff for BS08565.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8293-PB 1..794 17..810 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:27:14 Download gff for BS08565.5prime
Subject Subject Range Query Range Percent Splice Strand
Iap2-RA 148..941 17..810 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:36:02 Download gff for BS08565.5prime
Subject Subject Range Query Range Percent Splice Strand
Diap2-RA 148..941 17..810 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:36:02 Download gff for BS08565.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 15933398..15933819 389..810 100 <- Minus
2R 15934199..15934570 17..388 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:27:14 Download gff for BS08565.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11820903..11821324 389..810 100 <- Minus
arm_2R 11821704..11822075 17..388 100   Minus

BS08565.complete Sequence

1529 bp (1529 high quality bases) assembled on 2006-01-18

GenBank Submission: FJ636199

> BS08565.complete
GAAGTTATCAGTCGACATGACGGAGCTGGGCATGGAGCTGGAGAGCGTTC
GCCTGGCGACATTTGGGGAATGGCCCCTGAATGCCCCAGTTTCCGCGGAG
GATCTGGTCGCCAATGGTTTCTTTGCCACGGGAAACTGGCTGGAGGCCGA
GTGCCATTTCTGCCACGTGCGCATCGACCGCTGGGAATACGGCGATCAAG
TGGCGGAGCGCCATCGCCGCTCCTCGCCCATCTGCTCCATGGTTCTGGCT
CCCAATCACTGCGGCAATGTTCCCAGGAGCCAGGAGAGCGACAACGAGGG
AAACAGCGTAGTGGACAGCCCGGAGTCCTGCTCTTGTCCCGATCTCTTGT
TGGAGGCCAATCGCTTGGTAACTTTCAAGGACTGGCCGAATCCCAACATC
ACGCCGCAGGCTCTGGCAAAGGCAGGTTTCTACTACCTGAACCGTCTGGA
TCACGTGAAGTGTGTTTGGTGCAACGGAGTGATTGCCAAGTGGGAGAAGA
ACGACAATGCCTTTGAAGAGCACAAGCGCTTTTTTCCCCAATGTCCTCGT
GTGCAAATGGGCCCCCTTATAGAGTTTGCCACCGGGAAGAACCTGGATGA
GCTGGGCATCCAGCCCACCACTCTGCCACTGCGTCCCAAGTACGCCTGCG
TGGACGCCAGATTGAGAACCTTCACCGATTGGCCCATTTCCAATATTCAG
CCCGCTTCGGCTTTGGCGCAGGCTGGCCTATATTATCAGAAAATAGGCGA
CCAGGTGCGCTGTTTCCACTGCAACATTGGATTGCGCTCCTGGCAGAAGG
AGGACGAGCCGTGGTTCGAACACGCCAAGTGGTCGCCAAAGTGTCAGTTC
GTTTTGCTGGCCAAGGGTCCAGCCTATGTAAGCGAAGTGCTCGCGACAAC
AGCTGCCAACGCCAGTTCCCAGCCAGCAACTGCTCCGGCTCCAACGCTCC
AAGCAGACGTACTGATGGATGAAGCTCCGGCCAAGGAGGCCCTAGCCTTG
GGTATCGATGGAGGAGTTGTGCGCAATGCCATCCAGCGCAAGCTCTTGAG
TTCCGGCTGCGCTTTCTCTACGTTGGACGAACTATTGCATGACATCTTTG
ACGATGCGGGCGCAGGAGCTGCACTGGAGGTGCGCGAGCCGCCGGAGCCA
AGTGCTCCTTTTATTGAACCATGTCAGGCCACCACCAGCAAGGCAGCATC
TGTGCCAATACCGGTGGCCGATTCCATCCCAGCCAAACCACAGGCAGCTG
AAGCAGTGGCGAATATATCGAAAATCACAGACGAAATACAAAAGATGTCG
GTGGCCACGCCGAACGGAAACCTATCGCTGGAGGAGGAAAACCGCCAGCT
AAAGGATGCACGCTTATGCAAGGTATGCTTGGACGAGGAGGTTGGCGTAG
TGTTCCTGCCCTGTGGCCACTTGGCCACCTGCAATCAGTGCGCCCCCAGT
GTAGCCAATTGTCCCATGTGCCGCGCAGACATCAAGGGATTCGTGCGCAC
GTTCCTTTCGTGAAAGCTTTCTAGACCAT

BS08565.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:36:18
Subject Length Description Subject Range Query Range Score Percent Strand
Diap2-RB 1497 CG8293-PB 1..1497 17..1513 7485 100 Plus
Diap2-RA 1497 CG8293-PA 1..1497 17..1513 7485 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:36:20
Subject Length Description Subject Range Query Range Score Percent Strand
Diap2-RB 1997 CG8293-RB 39..1536 17..1514 7490 100 Plus
Diap2-RA 2106 CG8293-RA 148..1645 17..1514 7490 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:36:16
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15932784..15933820 1424..388 5185 100 Minus
2R 25286936 2R 15934199..15934570 388..17 1860 100 Minus
2R 25286936 2R 15932631..15932721 1514..1424 455 100 Minus
Blast to na_te.dros performed on 2014-11-27 13:36:17 has no hits.

BS08565.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:02:47 Download gff for BS08565.complete
Subject Subject Range Query Range Percent Splice Strand
Iap2-RB 1..1497 17..1513 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:40:37 Download gff for BS08565.complete
Subject Subject Range Query Range Percent Splice Strand
Iap2-RB 39..1536 17..1514 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:52:14 Download gff for BS08565.complete
Subject Subject Range Query Range Percent Splice Strand
Iap2-RA 148..1643 17..1512 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:02:47 Download gff for BS08565.complete
Subject Subject Range Query Range Percent Splice Strand
Iap2-RB 39..1536 17..1514 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:22:14 Download gff for BS08565.complete
Subject Subject Range Query Range Percent Splice Strand
Diap2-RA 148..1643 17..1512 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:22:14 Download gff for BS08565.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15932633..15932720 1425..1512 100 <- Minus
2R 15932784..15933819 389..1424 100 <- Minus
2R 15934199..15934570 17..388 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:52:14 Download gff for BS08565.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11820138..11820225 1425..1512 100 <- Minus
arm_2R 11820289..11821324 389..1424 100 <- Minus
arm_2R 11821704..11822075 17..388 100   Minus

BS08565.pep Sequence

Translation from 16 to 1512

> BS08565.pep
MTELGMELESVRLATFGEWPLNAPVSAEDLVANGFFATGNWLEAECHFCH
VRIDRWEYGDQVAERHRRSSPICSMVLAPNHCGNVPRSQESDNEGNSVVD
SPESCSCPDLLLEANRLVTFKDWPNPNITPQALAKAGFYYLNRLDHVKCV
WCNGVIAKWEKNDNAFEEHKRFFPQCPRVQMGPLIEFATGKNLDELGIQP
TTLPLRPKYACVDARLRTFTDWPISNIQPASALAQAGLYYQKIGDQVRCF
HCNIGLRSWQKEDEPWFEHAKWSPKCQFVLLAKGPAYVSEVLATTAANAS
SQPATAPAPTLQADVLMDEAPAKEALALGIDGGVVRNAIQRKLLSSGCAF
STLDELLHDIFDDAGAGAALEVREPPEPSAPFIEPCQATTSKAASVPIPV
ADSIPAKPQAAEAVANISKITDEIQKMSVATPNGNLSLEEENRQLKDARL
CKVCLDEEVGVVFLPCGHLATCNQCAPSVANCPMCRADIKGFVRTFLS*

BS08565.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:22:31
Subject Length Description Subject Range Query Range Score Percent Strand
Diap2-PB 498 CG8293-PB 1..498 1..498 2670 100 Plus
Diap2-PA 498 CG8293-PA 1..498 1..498 2670 100 Plus
Diap1-PF 438 CG12284-PF 44..438 9..498 403 28.6 Plus
Diap1-PE 438 CG12284-PE 44..438 9..498 403 28.6 Plus
Diap1-PD 438 CG12284-PD 44..438 9..498 403 28.6 Plus