Clone Sequence Records
BS08565.3prime Sequence
844 bp (811 high quality bases) assembled on 2006-01-10
> BS08565.3prime
ATGGTCTAGAAAGCTTTCACGAAAGGAACGTGCGCACGAATCCCTTGATG
TCTGCGCGGCACATGGGACAATTGGCTACACTGGGGGCGCACTGATTGCA
GGTGGCCAAGTGGCCACAGGGCAGGAACACTACGCCAACCTCCTCGTCCA
AGCATACCTTGCATAAGCGTGCATCCTTTAGCTGGCGGTTTTCCTCCTCC
AGCGATAGGTTTCCGTTCGGCGTGGCCACCGACATCTTTTGTATTTCGTC
TGTGATTTTCGATATATTCGCCACTGCTTCAGCTGCCTGTGGTTTGGCTG
GGATGGAATCGGCCACCGGTATTGGCACAGATGCTGCCTTGCTGGTGGTG
GCCTGACATGGTTCAATAAAAGGAGCACTTGGCTCCGGCGGCTCGCGCAC
CTCCAGTGCAGCTCCTGCGCCCGCATCGTCAAAGATGTCATGCAATAGTT
CGTCCAACGTAGAGAAAGCGCAGCCGGAACTCAAGAGCTTGCGCTGGATG
GCATTGCGCACAACTCCTCCATCGATACCCAAGGCTAGGGCCTCCTTGGC
CGGAGCTTCATCCATCAGTACGTCTGCTTGGAGCGTTGGAGCCGGAGCAG
TTGCTGGCTGGGAACTGGCGTTGGCAGCTGTTGTCGCGAGCACTTCGCTT
ACATAGGCTGGACCCTTGGCCAGCAAAACGAACTGACACTTTGGCGACCA
CTTGGCGTGTTCGAACCACGGCTCGTCCTCCTTCTGCCAGGAGCGCAATC
CAATGTTGCAGTGGAAACAGCGCACCTGGTCGCCTATTTTCTGATAATAT
AGGCCAGCCTGCGCCCAAGCCGAAGCGGGCTGAATATTGNAAAT
BS08565.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:09:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8293-PA | 1497 | Iap2-RA | 670..1497 | 844..17 | 4096 | 99.7 | Minus |
CG8293-PB | 1497 | Iap2-RB | 670..1497 | 844..17 | 4096 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:30:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Diap2-RB | 1997 | CG8293-RB | 708..1536 | 844..16 | 4119 | 99.8 | Minus |
Diap2-RA | 2106 | CG8293-RA | 817..1645 | 844..16 | 4119 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 09:30:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 15932784..15933522 | 106..844 | 3669 | 99.7 | Plus |
2R | 25286936 | 2R | 15932631..15932721 | 16..106 | 455 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-03 09:30:04 has no hits.
BS08565.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:44:01 Download gff for
BS08565.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Iap2-PB | 670..1497 | 17..844 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:44:39 Download gff for
BS08565.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8293-PB | 670..1497 | 17..844 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:47:02 Download gff for
BS08565.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Iap2-RA | 817..1645 | 16..844 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 10:00:59 Download gff for
BS08565.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Diap2-RA | 817..1645 | 16..844 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 10:00:59 Download gff for
BS08565.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15932631..15932720 | 16..105 | 100 | <- | Plus |
2R | 15932784..15933522 | 106..844 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:47:02 Download gff for
BS08565.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11820136..11820225 | 16..105 | 100 | <- | Plus |
arm_2R | 11820289..11821027 | 106..844 | 99 | | Plus |
BS08565.5prime Sequence
810 bp (807 high quality bases) assembled on 2006-01-10
> BS08565.5prime
GAAGTTATCAGTCGACATGACGGAGCTGGGCATGGAGCTGGAGAGCGTTC
GCCTGGCGACATTTGGGGAATGGCCCCTGAATGCCCCAGTTTCCGCGGAG
GATCTGGTCGCCAATGGTTTCTTTGCCACGGGAAACTGGCTGGAGGCCGA
GTGCCATTTCTGCCACGTGCGCATCGACCGCTGGGAATACGGCGATCAAG
TGGCGGAGCGCCATCGCCGCTCCTCGCCCATCTGCTCCATGGTTCTGGCT
CCCAATCACTGCGGCAATGTTCCCAGGAGCCAGGAGAGCGACAACGAGGG
AAACAGCGTAGTGGACAGCCCGGAGTCCTGCTCTTGTCCCGATCTCTTGT
TGGAGGCCAATCGCTTGGTAACTTTCAAGGACTGGCCGAATCCCAACATC
ACGCCGCAGGCTCTGGCAAAGGCAGGTTTCTACTACCTGAACCGTCTGGA
TCACGTGAAGTGTGTTTGGTGCAACGGAGTGATTGCCAAGTGGGAGAAGA
ACGACAATGCCTTTGAAGAGCACAAGCGCTTTTTTCCCCAATGTCCTCGT
GTGCAAATGGGCCCCCTTATAGAGTTTGCCACCGGGAAGAACCTGGATGA
GCTGGGCATCCAGCCCACCACTCTGCCACTGCGTCCCAAGTACGCCTGCG
TGGACGCCAGATTGAGAACCTTCACCGATTGGCCCATTTCCAATATTCAG
CCCGCTTCGGCTTTGGCGCAGGCTGGCCTATATTATCAGAAAATAGGCGA
CCAGGTGCGCTGTTTCCACTGCAACATTGGATTGCGCTCCTGGCAGAAGG
AGGACGAGCC
BS08565.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:09:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8293-PA | 1497 | Iap2-RA | 1..794 | 17..810 | 3970 | 100 | Plus |
CG8293-PB | 1497 | Iap2-RB | 1..794 | 17..810 | 3970 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:01:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Diap2-RB | 1997 | CG8293-RB | 39..832 | 17..810 | 3970 | 100 | Plus |
Diap2-RA | 2106 | CG8293-RA | 148..941 | 17..810 | 3970 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:01:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 15933398..15933820 | 810..388 | 2115 | 100 | Minus |
2R | 25286936 | 2R | 15934199..15934570 | 388..17 | 1860 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:01:50 has no hits.
BS08565.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:44:02 Download gff for
BS08565.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Iap2-PB | 1..794 | 17..810 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:44:41 Download gff for
BS08565.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8293-PB | 1..794 | 17..810 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:27:14 Download gff for
BS08565.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Iap2-RA | 148..941 | 17..810 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:36:02 Download gff for
BS08565.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Diap2-RA | 148..941 | 17..810 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:36:02 Download gff for
BS08565.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15933398..15933819 | 389..810 | 100 | <- | Minus |
2R | 15934199..15934570 | 17..388 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:27:14 Download gff for
BS08565.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11820903..11821324 | 389..810 | 100 | <- | Minus |
arm_2R | 11821704..11822075 | 17..388 | 100 | | Minus |
BS08565.complete Sequence
1529 bp (1529 high quality bases) assembled on 2006-01-18
GenBank Submission: FJ636199
> BS08565.complete
GAAGTTATCAGTCGACATGACGGAGCTGGGCATGGAGCTGGAGAGCGTTC
GCCTGGCGACATTTGGGGAATGGCCCCTGAATGCCCCAGTTTCCGCGGAG
GATCTGGTCGCCAATGGTTTCTTTGCCACGGGAAACTGGCTGGAGGCCGA
GTGCCATTTCTGCCACGTGCGCATCGACCGCTGGGAATACGGCGATCAAG
TGGCGGAGCGCCATCGCCGCTCCTCGCCCATCTGCTCCATGGTTCTGGCT
CCCAATCACTGCGGCAATGTTCCCAGGAGCCAGGAGAGCGACAACGAGGG
AAACAGCGTAGTGGACAGCCCGGAGTCCTGCTCTTGTCCCGATCTCTTGT
TGGAGGCCAATCGCTTGGTAACTTTCAAGGACTGGCCGAATCCCAACATC
ACGCCGCAGGCTCTGGCAAAGGCAGGTTTCTACTACCTGAACCGTCTGGA
TCACGTGAAGTGTGTTTGGTGCAACGGAGTGATTGCCAAGTGGGAGAAGA
ACGACAATGCCTTTGAAGAGCACAAGCGCTTTTTTCCCCAATGTCCTCGT
GTGCAAATGGGCCCCCTTATAGAGTTTGCCACCGGGAAGAACCTGGATGA
GCTGGGCATCCAGCCCACCACTCTGCCACTGCGTCCCAAGTACGCCTGCG
TGGACGCCAGATTGAGAACCTTCACCGATTGGCCCATTTCCAATATTCAG
CCCGCTTCGGCTTTGGCGCAGGCTGGCCTATATTATCAGAAAATAGGCGA
CCAGGTGCGCTGTTTCCACTGCAACATTGGATTGCGCTCCTGGCAGAAGG
AGGACGAGCCGTGGTTCGAACACGCCAAGTGGTCGCCAAAGTGTCAGTTC
GTTTTGCTGGCCAAGGGTCCAGCCTATGTAAGCGAAGTGCTCGCGACAAC
AGCTGCCAACGCCAGTTCCCAGCCAGCAACTGCTCCGGCTCCAACGCTCC
AAGCAGACGTACTGATGGATGAAGCTCCGGCCAAGGAGGCCCTAGCCTTG
GGTATCGATGGAGGAGTTGTGCGCAATGCCATCCAGCGCAAGCTCTTGAG
TTCCGGCTGCGCTTTCTCTACGTTGGACGAACTATTGCATGACATCTTTG
ACGATGCGGGCGCAGGAGCTGCACTGGAGGTGCGCGAGCCGCCGGAGCCA
AGTGCTCCTTTTATTGAACCATGTCAGGCCACCACCAGCAAGGCAGCATC
TGTGCCAATACCGGTGGCCGATTCCATCCCAGCCAAACCACAGGCAGCTG
AAGCAGTGGCGAATATATCGAAAATCACAGACGAAATACAAAAGATGTCG
GTGGCCACGCCGAACGGAAACCTATCGCTGGAGGAGGAAAACCGCCAGCT
AAAGGATGCACGCTTATGCAAGGTATGCTTGGACGAGGAGGTTGGCGTAG
TGTTCCTGCCCTGTGGCCACTTGGCCACCTGCAATCAGTGCGCCCCCAGT
GTAGCCAATTGTCCCATGTGCCGCGCAGACATCAAGGGATTCGTGCGCAC
GTTCCTTTCGTGAAAGCTTTCTAGACCAT
BS08565.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:36:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Diap2-RB | 1497 | CG8293-PB | 1..1497 | 17..1513 | 7485 | 100 | Plus |
Diap2-RA | 1497 | CG8293-PA | 1..1497 | 17..1513 | 7485 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:36:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Diap2-RB | 1997 | CG8293-RB | 39..1536 | 17..1514 | 7490 | 100 | Plus |
Diap2-RA | 2106 | CG8293-RA | 148..1645 | 17..1514 | 7490 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:36:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 15932784..15933820 | 1424..388 | 5185 | 100 | Minus |
2R | 25286936 | 2R | 15934199..15934570 | 388..17 | 1860 | 100 | Minus |
2R | 25286936 | 2R | 15932631..15932721 | 1514..1424 | 455 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:36:17 has no hits.
BS08565.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:02:47 Download gff for
BS08565.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Iap2-RB | 1..1497 | 17..1513 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:40:37 Download gff for
BS08565.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Iap2-RB | 39..1536 | 17..1514 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:52:14 Download gff for
BS08565.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Iap2-RA | 148..1643 | 17..1512 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:02:47 Download gff for
BS08565.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Iap2-RB | 39..1536 | 17..1514 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:22:14 Download gff for
BS08565.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Diap2-RA | 148..1643 | 17..1512 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:22:14 Download gff for
BS08565.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15932633..15932720 | 1425..1512 | 100 | <- | Minus |
2R | 15932784..15933819 | 389..1424 | 100 | <- | Minus |
2R | 15934199..15934570 | 17..388 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:52:14 Download gff for
BS08565.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11820138..11820225 | 1425..1512 | 100 | <- | Minus |
arm_2R | 11820289..11821324 | 389..1424 | 100 | <- | Minus |
arm_2R | 11821704..11822075 | 17..388 | 100 | | Minus |
BS08565.pep Sequence
Translation from 16 to 1512
> BS08565.pep
MTELGMELESVRLATFGEWPLNAPVSAEDLVANGFFATGNWLEAECHFCH
VRIDRWEYGDQVAERHRRSSPICSMVLAPNHCGNVPRSQESDNEGNSVVD
SPESCSCPDLLLEANRLVTFKDWPNPNITPQALAKAGFYYLNRLDHVKCV
WCNGVIAKWEKNDNAFEEHKRFFPQCPRVQMGPLIEFATGKNLDELGIQP
TTLPLRPKYACVDARLRTFTDWPISNIQPASALAQAGLYYQKIGDQVRCF
HCNIGLRSWQKEDEPWFEHAKWSPKCQFVLLAKGPAYVSEVLATTAANAS
SQPATAPAPTLQADVLMDEAPAKEALALGIDGGVVRNAIQRKLLSSGCAF
STLDELLHDIFDDAGAGAALEVREPPEPSAPFIEPCQATTSKAASVPIPV
ADSIPAKPQAAEAVANISKITDEIQKMSVATPNGNLSLEEENRQLKDARL
CKVCLDEEVGVVFLPCGHLATCNQCAPSVANCPMCRADIKGFVRTFLS*
BS08565.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:22:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Diap2-PB | 498 | CG8293-PB | 1..498 | 1..498 | 2670 | 100 | Plus |
Diap2-PA | 498 | CG8293-PA | 1..498 | 1..498 | 2670 | 100 | Plus |
Diap1-PF | 438 | CG12284-PF | 44..438 | 9..498 | 403 | 28.6 | Plus |
Diap1-PE | 438 | CG12284-PE | 44..438 | 9..498 | 403 | 28.6 | Plus |
Diap1-PD | 438 | CG12284-PD | 44..438 | 9..498 | 403 | 28.6 | Plus |