Clone BS08568 Report

Search the DGRC for BS08568

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:85
Well:68
Vector:pDNR-Dual
Associated Gene/TranscriptCG14232-RA
Protein status:BS08568.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08568.3prime Sequence

939 bp (818 high quality bases) assembled on 2006-01-10

> BS08568.3prime
ATGGTCTAGAAAGCTTTTAACGCTCGTAGTAGACGCGGTAGTACAGCGTC
TTATTGCGCCAGATGCTGTAGCTGTTGTCGAACTTCAGCAAATAGACGCC
CTCGCCCGGATAGGAGTGGGAGCCCACGTAGACCTCGTTGTAGCACTCCC
GTCGATAGATCGGTACGATAATGGAAATGGGTGCCTTGGGGGCAGCAGTC
GGGTTGTTAACTGCGCCGCGCTCCTGCGACAGCGAGCCGGACTCCAGGTC
CTCGGTGGTGGATAGGTAGTCCTCGTCCACGCAATCCTCGTCCTCGTCGG
AGTCGCTCACATGCACGGTCACCTCGTTGGTCACGGGCTTGGCCCACTCG
AAGTAGATGCCGAAGCCGATGTCGTAGCTGTCCGTGGCGAACTCCCAGAA
GATGCACTTGCCGTTCATGTTGGTGGGCACACGGACCGTCACCGTGTCGC
CGTGTCCAATGGTGATGACGCCGTCCCCATCGCCGGCGGACACCTCAGTC
TTAAACTGCTCGATGTCGGGACGAGTCCAGATCTTGGCCGGGCAGATCAT
AACGTAGTCGTCGTACTCTTCCTCGCCGTGCTGTTCCTGCCCAACGCCCT
CCAACGTCTGCTCTACATGCCCGTCTTGCTGCTCGGCCAGCTGCTGGTGC
TGCTGTGTCTCGACCTCACCGAGCTTCAGTCCCTCCATGGCGTTGGGCAA
GTCGGTTGAGCTGTTGTTGTTATTGCCAGGGACGTGTTCTGCTTCCTGGT
GTCCCTTGTCCTCCGTGTTCTGATTCTGATTCTGGTTCTGGTTCTGCAGA
TGAAGCTGTTGCATGTACTGGTGATAGTGCTCCCGCTGCAGCTGGTGGAT
AAGCACGGCCTGCTGTTCGGGGTTTTCCGGGGAACTGCTTCTCAGCGTAC
AGCTTAAACTGCTGGTAAGTCTGCTTGTTGAGTGCGTCC

BS08568.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:09:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG14232-PA 1443 CG14232-RA 585..1443 875..17 4295 100 Minus
CG14232-PA 1443 CG14232-RA 522..587 939..874 330 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:13:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG14232-RB 1874 CG14232-RB 687..1608 939..17 4590 99.9 Minus
CG14232-RA 1905 CG14232-RA 657..1578 939..17 4590 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:13:09
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19702731..19703199 435..904 2300 99.8 Plus
X 23542271 X 19702254..19702674 17..437 2105 100 Plus
X 23542271 X 19703403..19703439 903..939 185 100 Plus
Blast to na_te.dros performed on 2015-02-10 19:13:10 has no hits.

BS08568.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:44:08 Download gff for BS08568.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14232-PA 522..1443 17..939 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:44:48 Download gff for BS08568.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14232-PA 522..1443 17..939 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:00:25 Download gff for BS08568.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14232-RA 657..1581 14..939 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:32:33 Download gff for BS08568.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14232-RA 657..1581 14..939 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:32:33 Download gff for BS08568.3prime
Subject Subject Range Query Range Percent Splice Strand
X 19702251..19702673 14..436 99 <- Plus
X 19702733..19703197 437..902 99 <- Plus
X 19703403..19703439 903..939 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:00:25 Download gff for BS08568.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 19596284..19596706 14..436 99 <- Plus
arm_X 19596766..19597230 437..902 99 <- Plus
arm_X 19597436..19597472 903..939 100   Plus

BS08568.5prime Sequence

903 bp (823 high quality bases) assembled on 2006-01-10

> BS08568.5prime
GAAGTTATCAGTCGACATGGCGAGCGGGACAAGCGGCACAAGCAGCAGTG
AAACGGCCCAGTCGACGGACATGGCACCATCATCGGCCGAGAAGTGGGGC
TTCCCTTTGATTGAGCTCTACCGCCTGGCATTCACGTTCTACAAGCGGAA
CTCCGGCAAGGCCATCCACTTGTCGTACGAGGACAACCTCAAGCTGATCG
CCTTCAAGCAGCAGGCGGCGCTGGGCCCCTTCAACACGAGTCGCGCCCCG
GCGCTGGGCGTCCTGGACGTGATCGGACGCGACCGGCAGCAGCACTGGCA
GCTGCTCGGTGAGATAACGCGCGAGCAGGCGATGGAGGGGTTCGTCGACC
TGCTGGACACAATGTGCAGCGCCTTTCGGCCGTACATTGAGGCCGTGCGG
CAGGACCGCGACGAGACGCTGCGCAAGGAGCTGCGCCTCATGGAGGAGAA
GAAGGAGGCACGCGAGCGGCAGGAGAACGCCCAGCAGGAGCTGCTCGAGG
AGGGTTACAAGGAGGAGCTGCAGCGCCGCCAGCTGCAGGACGCACTCAAC
AAGCAGACTTACCAGCAGTTTAAGCTGTACGCTGAGAAGCAGTTCCCCGG
AAACCCCGAACAGCAGGCCGTGCTTATCCACCAGCTGCAGCGGGAGCACT
ATCACCAGTACATGCAACAGCTTCATCTGCAGAACCAGAACCAGAATCAG
AATCAGAACACGGAGGACAAGGGACACCAGGAAGCAGAACACGTCCCTGG
CAATAACAACAACAGCTCAACCGACTTGCCCAACGCCATGGAGGGGACTG
AAGCTCGGTGAGGTCGAGACACAGCAGCACCAGCAGCTGGCCGAGCAGCA
AGACGGGCATGTAGAGCAGACGTTGGAGGGCGTTGGGCAGGAACAGCACG
GCG

BS08568.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:09:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG14232-PA 1443 CG14232-RA 1..779 17..795 3895 100 Plus
CG14232-PA 1443 CG14232-RA 777..886 794..903 550 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:43:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG14232-RB 1874 CG14232-RB 165..1051 16..903 4415 99.9 Plus
CG14232-RA 1905 CG14232-RA 135..1021 16..903 4415 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:43:30
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19703403..19703830 574..147 2140 100 Minus
X 23542271 X 19702870..19703199 903..573 1605 99.7 Minus
X 23542271 X 19703888..19704019 147..16 660 100 Minus
Blast to na_te.dros performed on 2015-02-11 17:43:34 has no hits.

BS08568.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:44:09 Download gff for BS08568.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14232-PA 1..886 17..903 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:44:50 Download gff for BS08568.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14232-PA 1..886 17..903 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:20:35 Download gff for BS08568.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14232-RA 135..1021 16..903 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:24:10 Download gff for BS08568.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14232-RA 135..1021 16..903 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:24:10 Download gff for BS08568.5prime
Subject Subject Range Query Range Percent Splice Strand
X 19702870..19703197 575..903 99 <- Minus
X 19703403..19703830 147..574 100 <- Minus
X 19703889..19704019 16..146 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:20:35 Download gff for BS08568.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 19596903..19597230 575..903 99 <- Minus
arm_X 19597436..19597863 147..574 100 <- Minus
arm_X 19597922..19598052 16..146 100   Minus

BS08568.complete Sequence

1475 bp (1475 high quality bases) assembled on 2006-01-18

GenBank Submission: FJ636200

> BS08568.complete
GAAGTTATCAGTCGACATGGCGAGCGGGACAAGCGGCACAAGCAGCAGTG
AAACGGCCCAGTCGACGGACATGGCACCATCATCGGCCGAGAAGTGGGGC
TTCCCTTTGATTGAGCTCTACCGCCTGGCATTCACGTTCTACAAGCGGAA
CTCCGGCAAGGCCATCCACTTGTCGTACGAGGACAACCTCAAGCTGATCG
CCTTCAAGCAGCAGGCGGCGCTGGGCCCCTTCAACACGAGTCGCGCCCCG
GCGCTGGGCGTCCTGGACGTGATCGGACGCGACCGGCAGCAGCACTGGCA
GCTGCTCGGTGAGATAACGCGCGAGCAGGCGATGGAGGGGTTCGTCGACC
TGCTGGACACAATGTGCAGCGCCTTTCGGCCGTACATTGAGGCCGTGCGG
CAGGACCGCGACGAGACGCTGCGCAAGGAGCTGCGCCTCATGGAGGAGAA
GAAGGAGGCACGCGAGCGGCAGGAGAACGCCCAGCAGGAGCTGCTCGAGG
AGGGTTACAAGGAGGAGCTGCAGCGCCGCCAGCTGCAGGACGCACTCAAC
AAGCAGACTTACCAGCAGTTTAAGCTGTACGCTGAGAAGCAGTTCCCCGG
AAACCCCGAACAGCAGGCCGTGCTTATCCACCAGCTGCAGCGGGAGCACT
ATCACCAGTACATGCAACAGCTTCATCTGCAGAACCAGAACCAGAATCAG
AATCAGAACACGGAGGACAAGGGACACCAGGAAGCAGAACACGTCCCTGG
CAATAACAACAACAGCTCAACCGACTTGCCCAACGCCATGGAGGGACTGA
AGCTCGGTGAGGTCGAGACACAGCAGCACCAGCAGCTGGCCGAGCAGCAA
GACGGGCATGTAGAGCAGACGTTGGAGGGCGTTGGGCAGGAACAGCACGG
CGAGGAAGAGTACGACGACTACGTTATGATCTGCCCGGCCAAGATCTGGA
CTCGTCCCGACATCGAGCAGTTTAAGACTGAGGTGTCCGCCGGCGATGGG
GACGGCGTCATCACCATTGGACACGGCGACACGGTGACGGTCCGTGTGCC
CACCAACATGAACGGCAAGTGCATCTTCTGGGAGTTCGCCACGGACAGCT
ACGACATCGGCTTCGGCATCTACTTCGAGTGGGCCAAGCCCGTGACCAAC
GAGGTGACCGTGCATGTGAGCGACTCCGACGAGGACGAGGATTGCGTGGA
CGAGGACTACCTATCCACCACCGAGGACCTGGAGTCCGGCTCGCTGTCGC
AGGAGCGCGGCGCAGTTAACAACCCGACTGCTGCCCCCAAGGCACCCATT
TCCATTATCGTACCGATCTATCGACGGGAGTGCTACAACGAGGTCTACGT
GGGCTCCCACTCCTATCCGGGCGAGGGCGTCTATTTGCTGAAGTTCGACA
ACAGCTACAGCATCTGGCGCAATAAGACGCTGTACTACCGCGTCTACTAC
GAGCGTTAAAAGCTTTCTAGACCAT

BS08568.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:56:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG14232-RB 1443 CG14232-PB 1..1443 17..1459 7215 100 Plus
CG14232-RA 1443 CG14232-PA 1..1443 17..1459 7215 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:56:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG14232-RB 1874 CG14232-RB 165..1608 16..1459 7220 100 Plus
CG14232-RA 1905 CG14232-RA 135..1578 16..1459 7220 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:56:56
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19702731..19703199 1041..573 2345 100 Minus
X 23542271 X 19703403..19703830 574..147 2140 100 Minus
X 23542271 X 19702254..19702674 1459..1039 2105 100 Minus
X 23542271 X 19703888..19704019 147..16 660 100 Minus
Blast to na_te.dros performed on 2014-11-27 13:56:57 has no hits.

BS08568.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:02:35 Download gff for BS08568.complete
Subject Subject Range Query Range Percent Splice Strand
CG14232-RA 1..1443 17..1459 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:40:21 Download gff for BS08568.complete
Subject Subject Range Query Range Percent Splice Strand
CG14232-RA 127..1573 16..1462 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:29:32 Download gff for BS08568.complete
Subject Subject Range Query Range Percent Splice Strand
CG14232-RA 136..1576 17..1457 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:02:36 Download gff for BS08568.complete
Subject Subject Range Query Range Percent Splice Strand
CG14232-RA 127..1573 16..1462 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:59:48 Download gff for BS08568.complete
Subject Subject Range Query Range Percent Splice Strand
CG14232-RA 136..1576 17..1457 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:59:48 Download gff for BS08568.complete
Subject Subject Range Query Range Percent Splice Strand
X 19702256..19702673 1040..1457 100 <- Minus
X 19702733..19703197 575..1039 100 <- Minus
X 19703403..19703830 147..574 100 <- Minus
X 19703889..19704018 17..146 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:29:32 Download gff for BS08568.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 19596289..19596706 1040..1457 100 <- Minus
arm_X 19596766..19597230 575..1039 100 <- Minus
arm_X 19597436..19597863 147..574 100 <- Minus
arm_X 19597922..19598051 17..146 100   Minus

BS08568.pep Sequence

Translation from 16 to 1458

> BS08568.pep
MASGTSGTSSSETAQSTDMAPSSAEKWGFPLIELYRLAFTFYKRNSGKAI
HLSYEDNLKLIAFKQQAALGPFNTSRAPALGVLDVIGRDRQQHWQLLGEI
TREQAMEGFVDLLDTMCSAFRPYIEAVRQDRDETLRKELRLMEEKKEARE
RQENAQQELLEEGYKEELQRRQLQDALNKQTYQQFKLYAEKQFPGNPEQQ
AVLIHQLQREHYHQYMQQLHLQNQNQNQNQNTEDKGHQEAEHVPGNNNNS
STDLPNAMEGLKLGEVETQQHQQLAEQQDGHVEQTLEGVGQEQHGEEEYD
DYVMICPAKIWTRPDIEQFKTEVSAGDGDGVITIGHGDTVTVRVPTNMNG
KCIFWEFATDSYDIGFGIYFEWAKPVTNEVTVHVSDSDEDEDCVDEDYLS
TTEDLESGSLSQERGAVNNPTAAPKAPISIIVPIYRRECYNEVYVGSHSY
PGEGVYLLKFDNSYSIWRNKTLYYRVYYER*

BS08568.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:23:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG14232-PB 480 CG14232-PB 1..480 1..480 2541 100 Plus
CG14232-PA 480 CG14232-PA 1..480 1..480 2541 100 Plus